EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000021269 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 3645 bases
Position: chr20:23974506-23978150
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000031379	RRM_1	PF00076.22	1.2e-31	1	2
ENSACLP00000031379	RRM_1	PF00076.22	1.2e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000032115	-	1080	-	ENSACLP00000031379	359 (aa)	-	-

Gene Model

Click here to download ENSACLG00000021269's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000021269's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000021269	-	50	40.000	ENSACLG00000015678	srsf9	69	40.526
ENSACLG00000021269	-	51	76.374	ENSACLG00000003395	srsf4	68	78.142
ENSACLG00000021269	-	65	40.741	ENSACLG00000021693	-	68	45.349
ENSACLG00000021269	-	50	63.102	ENSACLG00000027166	srsf5a	63	64.706

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000021269	-	98	59.887	ENSG00000116350	SRSF4	53	95.833	Homo_sapiens
ENSACLG00000021269	-	81	68.581	ENSAPOG00000023399	-	90	69.930	Acanthochromis_polyacanthus
ENSACLG00000021269	-	51	79.891	ENSAMEG00000000594	SRSF4	64	54.179	Ailuropoda_melanoleuca
ENSACLG00000021269	-	51	76.374	ENSACIG00000018649	srsf4	90	73.016	Amphilophus_citrinellus
ENSACLG00000021269	-	50	75.978	ENSATEG00000005680	srsf4	60	75.978	Anabas_testudineus
ENSACLG00000021269	-	72	57.576	ENSAMXG00000034811	srsf4	75	76.316	Astyanax_mexicanus
ENSACLG00000021269	-	50	51.010	WBGene00004698	rsp-1	97	53.147	Caenorhabditis_elegans
ENSACLG00000021269	-	50	54.872	ENSCING00000020631	-	79	57.292	Ciona_intestinalis
ENSACLG00000021269	-	82	41.159	ENSCING00000024718	-	56	58.031	Ciona_intestinalis
ENSACLG00000021269	-	50	49.744	ENSCING00000011362	-	65	52.717	Ciona_intestinalis
ENSACLG00000021269	-	50	58.500	ENSCING00000012370	-	68	59.701	Ciona_intestinalis
ENSACLG00000021269	-	50	62.567	ENSCSAVG00000002581	-	70	61.957	Ciona_savignyi
ENSACLG00000021269	-	51	68.421	ENSDARG00000105293	srsf4	72	75.000	Danio_rerio
ENSACLG00000021269	-	51	79.891	ENSDNOG00000047961	SRSF4	67	51.831	Dasypus_novemcinctus
ENSACLG00000021269	-	69	53.333	FBgn0004587	B52	96	62.308	Drosophila_melanogaster
ENSACLG00000021269	-	53	57.619	ENSEBUG00000001681	srsf4	67	62.983	Eptatretus_burgeri
ENSACLG00000021269	-	97	48.901	ENSELUG00000017551	srsf4	93	67.692	Esox_lucius
ENSACLG00000021269	-	51	74.731	ENSFHEG00000007472	srsf4	82	81.579	Fundulus_heteroclitus
ENSACLG00000021269	-	51	72.527	ENSGMOG00000012906	srsf4	56	72.527	Gadus_morhua
ENSACLG00000021269	-	51	78.142	ENSGAFG00000018496	srsf4	65	70.166	Gambusia_affinis
ENSACLG00000021269	-	51	76.630	ENSGACG00000002389	srsf4	55	75.824	Gasterosteus_aculeatus
ENSACLG00000021269	-	85	95.098	ENSHBUG00000011326	-	85	96.040	Haplochromis_burtoni
ENSACLG00000021269	-	78	80.303	ENSHCOG00000012540	srsf4	68	74.317	Hippocampus_comes
ENSACLG00000021269	-	58	70.142	ENSKMAG00000013631	srsf4	81	65.714	Kryptolebias_marmoratus
ENSACLG00000021269	-	97	55.372	ENSMAMG00000004888	srsf4	68	76.923	Mastacembelus_armatus
ENSACLG00000021269	-	51	76.374	ENSMZEG00005026275	srsf4	68	78.142	Maylandia_zebra
ENSACLG00000021269	-	51	81.319	ENSMGAG00000002400	SRSF4	62	58.170	Meleagris_gallopavo
ENSACLG00000021269	-	51	79.891	ENSMAUG00000021940	Srsf4	66	55.723	Mesocricetus_auratus
ENSACLG00000021269	-	51	79.891	ENSMOCG00000013319	Srsf4	71	53.825	Microtus_ochrogaster
ENSACLG00000021269	-	95	53.631	ENSMMOG00000013653	srsf4	65	70.330	Mola_mola
ENSACLG00000021269	-	90	59.509	ENSMODG00000011052	SRSF4	55	78.075	Monodelphis_domestica
ENSACLG00000021269	-	61	70.455	ENSMALG00000013392	srsf4	66	75.275	Monopterus_albus
ENSACLG00000021269	-	51	79.235	ENSNLEG00000030787	-	62	78.022	Nomascus_leucogenys
ENSACLG00000021269	-	51	76.374	ENSORLG00020016052	srsf4	66	77.473	Oryzias_latipes_hni
ENSACLG00000021269	-	51	76.374	ENSORLG00015007566	srsf4	70	77.473	Oryzias_latipes_hsok
ENSACLG00000021269	-	51	79.891	ENSOGAG00000015515	SRSF4	70	54.795	Otolemur_garnettii
ENSACLG00000021269	-	51	74.346	ENSPMGG00000013436	srsf4	95	73.228	Periophthalmus_magnuspinnatus
ENSACLG00000021269	-	50	66.851	ENSPMAG00000009397	srsf4	68	69.231	Petromyzon_marinus
ENSACLG00000021269	-	97	55.587	ENSPLAG00000008812	srsf4	64	68.681	Poecilia_latipinna
ENSACLG00000021269	-	51	78.142	ENSPREG00000009639	srsf4	50	76.374	Poecilia_reticulata
ENSACLG00000021269	-	51	79.891	ENSPCOG00000027341	SRSF4	70	54.247	Propithecus_coquereli
ENSACLG00000021269	-	51	78.571	ENSPNYG00000003796	srsf4	56	79.121	Pundamilia_nyererei
ENSACLG00000021269	-	96	55.172	ENSPNAG00000023844	srsf4	53	72.527	Pygocentrus_nattereri
ENSACLG00000021269	-	50	74.317	ENSSFOG00015020292	srsf4	82	68.908	Scleropages_formosus
ENSACLG00000021269	-	97	58.286	ENSSDUG00000007387	srsf4	54	76.923	Seriola_dumerili
ENSACLG00000021269	-	68	54.472	ENSSLDG00000009745	srsf4	61	62.842	Seriola_lalandi_dorsalis
ENSACLG00000021269	-	51	75.401	ENSSPAG00000014538	srsf4	83	73.016	Stegastes_partitus
ENSACLG00000021269	-	51	76.087	ENSXCOG00000018826	srsf4	89	71.429	Xiphophorus_couchianus
ENSACLG00000021269	-	85	79.688	ENSXCOG00000003212	-	92	77.215	Xiphophorus_couchianus