EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000021693 (Gene tree)
Gene ID: 113030324
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1B
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 10407 bases
Position: chr10:15072250-15082656
Accession: 113030324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000032012	RRM_1	PF00076.22	2e-33	1	2
ENSACLP00000032012	RRM_1	PF00076.22	2e-33	2	2
ENSACLP00000031997	RRM_1	PF00076.22	2e-33	1	2
ENSACLP00000031997	RRM_1	PF00076.22	2e-33	2	2
ENSACLP00000031980	RRM_1	PF00076.22	3.7e-31	1	2
ENSACLP00000031980	RRM_1	PF00076.22	3.7e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000032765	-	786	-	ENSACLP00000032012	261 (aa)	XP_026037460	UPI0003AF495E
ENSACLT00000032735	-	2156	-	ENSACLP00000031980	251 (aa)	-	-
ENSACLT00000032751	-	1716	-	ENSACLP00000031997	270 (aa)	-	-

Gene Model

Click here to download ENSACLG00000021693's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000021693's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000021693	-	66	47.283	ENSACLG00000027166	srsf5a	60	47.826
ENSACLG00000021693	-	92	40.580	ENSACLG00000003395	srsf4	97	36.765
ENSACLG00000021693	-	67	50.289	ENSACLG00000026424	srsf5b	57	48.837
ENSACLG00000021693	-	77	65.803	ENSACLG00000015678	srsf9	71	67.876
ENSACLG00000021693	-	80	82.587	ENSACLG00000005676	-	95	74.590
ENSACLG00000021693	-	68	45.349	ENSACLG00000021269	-	65	40.741

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000021693	-	76	93.717	ENSACIG00000002623	-	98	93.299	Amphilophus_citrinellus
ENSACLG00000021693	-	77	59.487	WBGene00004700	rsp-3	75	64.615	Caenorhabditis_elegans
ENSACLG00000021693	-	76	68.421	ENSCING00000007375	-	76	68.421	Ciona_intestinalis
ENSACLG00000021693	-	73	53.684	ENSCING00000000257	-	79	58.621	Ciona_intestinalis
ENSACLG00000021693	-	72	52.486	ENSCSAVG00000003567	-	89	50.314	Ciona_savignyi
ENSACLG00000021693	-	76	67.895	ENSCSAVG00000006093	-	91	67.895	Ciona_savignyi
ENSACLG00000021693	-	76	64.737	FBgn0283477	SF2	73	67.368	Drosophila_melanogaster
ENSACLG00000021693	-	99	69.880	ENSEBUG00000009582	-	96	69.710	Eptatretus_burgeri
ENSACLG00000021693	-	81	89.655	ENSFHEG00000017425	-	100	90.722	Fundulus_heteroclitus
ENSACLG00000021693	-	78	82.051	ENSGMOG00000010606	-	97	84.817	Gadus_morhua
ENSACLG00000021693	-	80	83.085	ENSGAFG00000012721	-	96	75.000	Gambusia_affinis
ENSACLG00000021693	-	93	92.032	ENSGAFG00000000609	-	93	93.220	Gambusia_affinis
ENSACLG00000021693	-	75	82.447	ENSGACG00000011094	-	96	84.043	Gasterosteus_aculeatus
ENSACLG00000021693	-	53	61.364	ENSHBUG00000015600	-	93	56.204	Haplochromis_burtoni
ENSACLG00000021693	-	100	99.617	ENSHBUG00000015576	-	100	99.617	Haplochromis_burtoni
ENSACLG00000021693	-	80	78.922	ENSHCOG00000008016	-	92	71.193	Hippocampus_comes
ENSACLG00000021693	-	95	80.952	ENSMFAG00000034223	-	79	80.738	Macaca_fascicularis
ENSACLG00000021693	-	100	99.259	ENSMZEG00005019071	-	100	99.259	Maylandia_zebra
ENSACLG00000021693	-	80	82.587	ENSMZEG00005007947	-	95	74.590	Maylandia_zebra
ENSACLG00000021693	-	81	85.294	ENSMMOG00000018849	-	94	84.711	Mola_mola
ENSACLG00000021693	-	100	99.234	ENSNBRG00000008134	-	100	99.234	Neolamprologus_brichardi
ENSACLG00000021693	-	80	82.587	ENSNBRG00000019981	-	95	74.590	Neolamprologus_brichardi
ENSACLG00000021693	-	71	63.277	ENSOPRG00000004745	-	98	63.277	Ochotona_princeps
ENSACLG00000021693	-	96	98.810	ENSONIG00000004857	-	99	98.810	Oreochromis_niloticus
ENSACLG00000021693	-	51	86.957	ENSOANG00000007320	-	79	83.594	Ornithorhynchus_anatinus
ENSACLG00000021693	-	72	51.667	ENSOCUG00000026856	-	96	53.333	Oryctolagus_cuniculus
ENSACLG00000021693	-	100	93.870	ENSORLG00000005314	-	99	93.870	Oryzias_latipes
ENSACLG00000021693	-	100	93.870	ENSORLG00015015497	-	99	93.870	Oryzias_latipes_hsok
ENSACLG00000021693	-	100	95.785	ENSOMEG00000017711	-	98	95.785	Oryzias_melastigma
ENSACLG00000021693	-	80	81.373	ENSPLAG00000019553	-	91	83.684	Poecilia_latipinna
ENSACLG00000021693	-	75	83.511	ENSPLAG00000019613	-	71	84.043	Poecilia_latipinna
ENSACLG00000021693	-	82	89.372	ENSPREG00000016792	-	93	92.373	Poecilia_reticulata
ENSACLG00000021693	-	80	82.587	ENSPNYG00000017115	-	95	74.590	Pundamilia_nyererei
ENSACLG00000021693	-	100	100.000	ENSPNYG00000020651	-	100	100.000	Pundamilia_nyererei
ENSACLG00000021693	-	82	88.785	ENSSFOG00015004989	-	71	86.634	Scleropages_formosus
ENSACLG00000021693	-	99	80.237	ENSSDUG00000003887	-	92	91.701	Seriola_dumerili
ENSACLG00000021693	-	81	80.392	ENSTRUG00000017058	-	95	78.926	Takifugu_rubripes
ENSACLG00000021693	-	81	77.561	ENSTNIG00000009993	-	95	76.543	Tetraodon_nigroviridis
ENSACLG00000021693	-	80	81.373	ENSXCOG00000009643	-	96	75.417	Xiphophorus_couchianus
ENSACLG00000021693	-	82	89.855	ENSXCOG00000017888	-	93	92.797	Xiphophorus_couchianus
ENSACLG00000021693	-	93	91.633	ENSXMAG00000010797	-	93	92.797	Xiphophorus_maculatus