EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000022738 (Gene tree)
Gene ID: 113007036
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 5445 bases
Position: chr15:32628598-32634042
Accession: 113007036
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000033544	LSM	PF01423.22	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000034344	-	3085	-	ENSACLP00000033544	147 (aa)	XP_025999143	UPI00022AFFB2

Gene Model

Click here to download ENSACLG00000022738's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000022738's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000022738	lsm4	51	33.333	ENSACLG00000004728	oscp1a	59	33.333
ENSACLG00000022738	lsm4	67	32.673	ENSACLG00000024717	smx5	100	32.673
ENSACLG00000022738	lsm4	75	31.818	ENSACLG00000021295	snrpd3l	91	32.031

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000022738	lsm4	60	98.864	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSACLG00000022738	lsm4	100	94.040	ENSAPOG00000005643	lsm4	100	94.040	Acanthochromis_polyacanthus
ENSACLG00000022738	lsm4	59	98.851	ENSAMEG00000011162	LSM4	75	83.740	Ailuropoda_melanoleuca
ENSACLG00000022738	lsm4	100	95.946	ENSAOCG00000006414	lsm4	100	95.946	Amphiprion_ocellaris
ENSACLG00000022738	lsm4	100	95.302	ENSAPEG00000006238	lsm4	100	95.302	Amphiprion_percula
ENSACLG00000022738	lsm4	100	90.789	ENSATEG00000016559	lsm4	100	91.447	Anabas_testudineus
ENSACLG00000022738	lsm4	60	98.864	ENSANAG00000034659	LSM4	98	78.125	Aotus_nancymaae
ENSACLG00000022738	lsm4	100	86.486	ENSAMXG00000016932	lsm4	100	85.811	Astyanax_mexicanus
ENSACLG00000022738	lsm4	60	98.864	ENSBTAG00000008578	LSM4	79	83.871	Bos_taurus
ENSACLG00000022738	lsm4	56	75.904	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSACLG00000022738	lsm4	60	98.864	ENSCJAG00000014171	LSM4	79	83.871	Callithrix_jacchus
ENSACLG00000022738	lsm4	60	98.864	ENSCAFG00000014900	LSM4	72	83.871	Canis_familiaris
ENSACLG00000022738	lsm4	60	98.864	ENSCAFG00020012137	LSM4	79	83.871	Canis_lupus_dingo
ENSACLG00000022738	lsm4	59	98.851	ENSCHIG00000010928	LSM4	72	83.740	Capra_hircus
ENSACLG00000022738	lsm4	60	97.727	ENSTSYG00000030906	LSM4	79	83.065	Carlito_syrichta
ENSACLG00000022738	lsm4	60	97.727	ENSCAPG00000014140	LSM4	79	83.871	Cavia_aperea
ENSACLG00000022738	lsm4	60	97.727	ENSCPOG00000024117	LSM4	79	83.871	Cavia_porcellus
ENSACLG00000022738	lsm4	60	98.864	ENSCCAG00000036308	LSM4	79	83.871	Cebus_capucinus
ENSACLG00000022738	lsm4	60	98.864	ENSCATG00000029311	LSM4	98	78.295	Cercocebus_atys
ENSACLG00000022738	lsm4	60	98.864	ENSCLAG00000010828	LSM4	99	81.250	Chinchilla_lanigera
ENSACLG00000022738	lsm4	60	98.864	ENSCSAG00000005370	LSM4	79	83.871	Chlorocebus_sabaeus
ENSACLG00000022738	lsm4	60	100.000	ENSCPBG00000012925	LSM4	96	83.571	Chrysemys_picta_bellii
ENSACLG00000022738	lsm4	59	93.023	ENSCING00000007519	-	91	76.613	Ciona_intestinalis
ENSACLG00000022738	lsm4	59	93.023	ENSCSAVG00000008596	-	78	87.629	Ciona_savignyi
ENSACLG00000022738	lsm4	60	98.864	ENSCANG00000043686	LSM4	98	78.295	Colobus_angolensis_palliatus
ENSACLG00000022738	lsm4	60	95.455	ENSCGRG00001014436	Lsm4	79	81.452	Cricetulus_griseus_chok1gshd
ENSACLG00000022738	lsm4	59	95.402	ENSCGRG00000009398	Lsm4	79	81.301	Cricetulus_griseus_crigri
ENSACLG00000022738	lsm4	100	88.435	ENSCSEG00000016127	lsm4	100	91.156	Cynoglossus_semilaevis
ENSACLG00000022738	lsm4	90	90.909	ENSCVAG00000021828	lsm4	98	90.909	Cyprinodon_variegatus
ENSACLG00000022738	lsm4	100	91.837	ENSCVAG00000010601	lsm4	100	91.837	Cyprinodon_variegatus
ENSACLG00000022738	lsm4	96	82.432	ENSDARG00000023852	lsm4	99	85.135	Danio_rerio
ENSACLG00000022738	lsm4	60	97.727	ENSDORG00000024225	Lsm4	99	80.556	Dipodomys_ordii
ENSACLG00000022738	lsm4	68	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSACLG00000022738	lsm4	50	97.260	ENSETEG00000007762	-	77	80.734	Echinops_telfairi
ENSACLG00000022738	lsm4	51	93.333	ENSEBUG00000003639	-	84	68.504	Eptatretus_burgeri
ENSACLG00000022738	lsm4	93	89.051	ENSELUG00000012821	lsm4	100	88.321	Esox_lucius
ENSACLG00000022738	lsm4	60	98.864	ENSFCAG00000040580	LSM4	79	83.871	Felis_catus
ENSACLG00000022738	lsm4	59	100.000	ENSFALG00000009478	LSM4	96	83.453	Ficedula_albicollis
ENSACLG00000022738	lsm4	59	98.851	ENSFDAG00000010124	LSM4	79	83.740	Fukomys_damarensis
ENSACLG00000022738	lsm4	99	78.912	ENSGMOG00000007729	lsm4	99	81.579	Gadus_morhua
ENSACLG00000022738	lsm4	60	100.000	ENSGALG00000003385	LSM4	96	83.571	Gallus_gallus
ENSACLG00000022738	lsm4	100	91.156	ENSGAFG00000004903	lsm4	97	88.636	Gambusia_affinis
ENSACLG00000022738	lsm4	100	86.667	ENSGACG00000008140	lsm4	100	90.000	Gasterosteus_aculeatus
ENSACLG00000022738	lsm4	60	100.000	ENSGAGG00000017812	LSM4	96	83.571	Gopherus_agassizii
ENSACLG00000022738	lsm4	60	98.864	ENSGGOG00000012914	-	98	78.295	Gorilla_gorilla
ENSACLG00000022738	lsm4	100	99.320	ENSHBUG00000008858	lsm4	80	99.320	Haplochromis_burtoni
ENSACLG00000022738	lsm4	97	76.389	ENSHGLG00000006568	LSM4	99	81.944	Heterocephalus_glaber_female
ENSACLG00000022738	lsm4	63	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSACLG00000022738	lsm4	100	92.517	ENSHCOG00000008819	lsm4	100	92.517	Hippocampus_comes
ENSACLG00000022738	lsm4	100	86.486	ENSIPUG00000005368	Lsm4	100	85.811	Ictalurus_punctatus
ENSACLG00000022738	lsm4	60	98.864	ENSSTOG00000016494	LSM4	79	83.871	Ictidomys_tridecemlineatus
ENSACLG00000022738	lsm4	60	96.591	ENSJJAG00000017420	Lsm4	79	82.258	Jaculus_jaculus
ENSACLG00000022738	lsm4	100	89.116	ENSKMAG00000005073	lsm4	100	91.837	Kryptolebias_marmoratus
ENSACLG00000022738	lsm4	100	95.302	ENSLBEG00000027930	lsm4	100	95.302	Labrus_bergylta
ENSACLG00000022738	lsm4	97	83.099	ENSLACG00000015861	LSM4	99	83.562	Latimeria_chalumnae
ENSACLG00000022738	lsm4	86	89.062	ENSLOCG00000002025	lsm4	100	83.784	Lepisosteus_oculatus
ENSACLG00000022738	lsm4	59	97.701	ENSLAFG00000017459	LSM4	78	82.927	Loxodonta_africana
ENSACLG00000022738	lsm4	60	98.864	ENSMFAG00000031194	LSM4	98	78.295	Macaca_fascicularis
ENSACLG00000022738	lsm4	60	98.864	ENSMMUG00000004405	LSM4	79	83.871	Macaca_mulatta
ENSACLG00000022738	lsm4	60	98.864	ENSMNEG00000042899	LSM4	98	78.295	Macaca_nemestrina
ENSACLG00000022738	lsm4	60	98.864	ENSMLEG00000027948	LSM4	98	78.295	Mandrillus_leucophaeus
ENSACLG00000022738	lsm4	100	93.878	ENSMAMG00000006190	lsm4	100	93.878	Mastacembelus_armatus
ENSACLG00000022738	lsm4	100	99.320	ENSMZEG00005016420	lsm4	100	99.320	Maylandia_zebra
ENSACLG00000022738	lsm4	94	77.143	ENSMGAG00000004976	LSM4	96	80.714	Meleagris_gallopavo
ENSACLG00000022738	lsm4	67	95.960	ENSMICG00000000222	LSM4	79	83.065	Microcebus_murinus
ENSACLG00000022738	lsm4	60	95.455	ENSMOCG00000020861	Lsm4	79	81.452	Microtus_ochrogaster
ENSACLG00000022738	lsm4	50	100.000	ENSMODG00000015044	-	98	75.969	Monodelphis_domestica
ENSACLG00000022738	lsm4	100	91.837	ENSMALG00000018159	lsm4	100	91.156	Monopterus_albus
ENSACLG00000022738	lsm4	60	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	79	81.452	Mus_caroli
ENSACLG00000022738	lsm4	60	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSACLG00000022738	lsm4	60	95.455	MGP_PahariEiJ_G0021623	Lsm4	79	81.452	Mus_pahari
ENSACLG00000022738	lsm4	60	95.455	MGP_SPRETEiJ_G0032276	Lsm4	79	81.452	Mus_spretus
ENSACLG00000022738	lsm4	60	98.864	ENSMPUG00000015589	LSM4	79	83.871	Mustela_putorius_furo
ENSACLG00000022738	lsm4	59	98.851	ENSMLUG00000004010	LSM4	78	83.740	Myotis_lucifugus
ENSACLG00000022738	lsm4	60	95.455	ENSNGAG00000008644	Lsm4	79	81.452	Nannospalax_galili
ENSACLG00000022738	lsm4	73	100.000	ENSNBRG00000022150	lsm4	67	100.000	Neolamprologus_brichardi
ENSACLG00000022738	lsm4	50	95.890	ENSMEUG00000013229	LSM4	77	77.982	Notamacropus_eugenii
ENSACLG00000022738	lsm4	52	97.403	ENSOPRG00000005575	LSM4	98	75.781	Ochotona_princeps
ENSACLG00000022738	lsm4	60	88.636	ENSODEG00000004519	-	80	75.000	Octodon_degus
ENSACLG00000022738	lsm4	97	59.028	ENSODEG00000011712	-	98	50.350	Octodon_degus
ENSACLG00000022738	lsm4	60	98.864	ENSODEG00000020549	-	79	83.065	Octodon_degus
ENSACLG00000022738	lsm4	100	100.000	ENSONIG00000012724	lsm4	100	100.000	Oreochromis_niloticus
ENSACLG00000022738	lsm4	59	94.505	ENSOANG00000007434	LSM4	97	80.315	Ornithorhynchus_anatinus
ENSACLG00000022738	lsm4	100	91.837	ENSORLG00000008391	lsm4	100	91.837	Oryzias_latipes
ENSACLG00000022738	lsm4	100	92.517	ENSORLG00020014829	lsm4	100	92.517	Oryzias_latipes_hni
ENSACLG00000022738	lsm4	100	91.837	ENSORLG00015010205	lsm4	100	91.837	Oryzias_latipes_hsok
ENSACLG00000022738	lsm4	100	91.156	ENSOMEG00000003606	lsm4	100	91.156	Oryzias_melastigma
ENSACLG00000022738	lsm4	67	95.918	ENSOGAG00000027992	LSM4	75	82.927	Otolemur_garnettii
ENSACLG00000022738	lsm4	59	98.851	ENSOARG00000012553	LSM4	95	71.111	Ovis_aries
ENSACLG00000022738	lsm4	60	98.864	ENSPPAG00000044045	-	98	78.295	Pan_paniscus
ENSACLG00000022738	lsm4	60	98.864	ENSPPRG00000018264	LSM4	79	83.871	Panthera_pardus
ENSACLG00000022738	lsm4	59	98.851	ENSPTIG00000006306	LSM4	79	83.740	Panthera_tigris_altaica
ENSACLG00000022738	lsm4	60	98.864	ENSPTRG00000031470	LSM4	98	78.295	Pan_troglodytes
ENSACLG00000022738	lsm4	60	98.864	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSACLG00000022738	lsm4	100	85.811	ENSPKIG00000006154	lsm4	100	85.135	Paramormyrops_kingsleyae
ENSACLG00000022738	lsm4	59	100.000	ENSPSIG00000012358	LSM4	96	82.734	Pelodiscus_sinensis
ENSACLG00000022738	lsm4	60	95.455	ENSPEMG00000001358	Lsm4	79	81.452	Peromyscus_maniculatus_bairdii
ENSACLG00000022738	lsm4	100	90.476	ENSPFOG00000000570	lsm4	76	90.476	Poecilia_formosa
ENSACLG00000022738	lsm4	100	89.796	ENSPLAG00000016267	lsm4	100	89.796	Poecilia_latipinna
ENSACLG00000022738	lsm4	100	90.476	ENSPMEG00000016378	lsm4	100	90.476	Poecilia_mexicana
ENSACLG00000022738	lsm4	100	90.476	ENSPREG00000011290	lsm4	76	90.476	Poecilia_reticulata
ENSACLG00000022738	lsm4	60	98.864	ENSPPYG00000009736	LSM4	79	83.871	Pongo_abelii
ENSACLG00000022738	lsm4	50	97.260	ENSPCAG00000008513	LSM4	77	80.734	Procavia_capensis
ENSACLG00000022738	lsm4	67	95.960	ENSPCOG00000019837	LSM4	79	83.065	Propithecus_coquereli
ENSACLG00000022738	lsm4	60	98.864	ENSPVAG00000015383	LSM4	79	83.871	Pteropus_vampyrus
ENSACLG00000022738	lsm4	100	99.320	ENSPNYG00000016794	lsm4	100	99.320	Pundamilia_nyererei
ENSACLG00000022738	lsm4	95	89.286	ENSPNAG00000016598	lsm4	100	88.571	Pygocentrus_nattereri
ENSACLG00000022738	lsm4	60	95.455	ENSRNOG00000019572	Lsm4	79	81.452	Rattus_norvegicus
ENSACLG00000022738	lsm4	60	98.864	ENSRBIG00000024717	LSM4	98	78.295	Rhinopithecus_bieti
ENSACLG00000022738	lsm4	60	98.864	ENSRROG00000045706	LSM4	98	78.295	Rhinopithecus_roxellana
ENSACLG00000022738	lsm4	56	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSACLG00000022738	lsm4	50	98.649	ENSSBOG00000022455	LSM4	77	81.818	Saimiri_boliviensis_boliviensis
ENSACLG00000022738	lsm4	60	100.000	ENSSHAG00000011559	LSM4	99	81.944	Sarcophilus_harrisii
ENSACLG00000022738	lsm4	100	86.486	ENSSFOG00015021067	lsm4	100	85.811	Scleropages_formosus
ENSACLG00000022738	lsm4	100	84.000	ENSSMAG00000021020	lsm4	100	92.667	Scophthalmus_maximus
ENSACLG00000022738	lsm4	100	85.629	ENSSDUG00000009588	lsm4	100	85.629	Seriola_dumerili
ENSACLG00000022738	lsm4	100	85.119	ENSSLDG00000006827	lsm4	100	85.119	Seriola_lalandi_dorsalis
ENSACLG00000022738	lsm4	59	100.000	ENSSPUG00000010166	LSM4	70	83.740	Sphenodon_punctatus
ENSACLG00000022738	lsm4	100	94.040	ENSSPAG00000011615	lsm4	100	94.040	Stegastes_partitus
ENSACLG00000022738	lsm4	60	98.864	ENSSSCG00000034314	LSM4	79	83.871	Sus_scrofa
ENSACLG00000022738	lsm4	100	91.837	ENSTRUG00000021737	lsm4	100	91.156	Takifugu_rubripes
ENSACLG00000022738	lsm4	100	89.189	ENSTNIG00000010191	lsm4	100	88.514	Tetraodon_nigroviridis
ENSACLG00000022738	lsm4	60	98.864	ENSUAMG00000000665	LSM4	91	83.871	Ursus_americanus
ENSACLG00000022738	lsm4	60	98.864	ENSUMAG00000009013	LSM4	79	83.871	Ursus_maritimus
ENSACLG00000022738	lsm4	59	98.851	ENSVVUG00000008136	LSM4	56	83.740	Vulpes_vulpes
ENSACLG00000022738	lsm4	67	96.939	ENSXETG00000024933	lsm4	99	82.517	Xenopus_tropicalis
ENSACLG00000022738	lsm4	100	90.476	ENSXMAG00000026672	lsm4	76	90.476	Xiphophorus_maculatus