EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSACLG00000023712 (Gene tree)
Gene ID: -
Gene Symbol: lrpprc
Alias: fc13c04|im:7150924|im:7151572|wu:fc13c04|wu:fj38h02
Full Name: leucine-rich pentatricopeptide repeat containing
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 60868 bases
Position: chr13:21046419-21107286
Accession: ZDB-GENE-030131-7887
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000035182	PPR	PF01535.20	3.1e-31	1	5
ENSACLP00000035182	PPR	PF01535.20	3.1e-31	2	5
ENSACLP00000035182	PPR	PF01535.20	3.1e-31	3	5
ENSACLP00000035182	PPR	PF01535.20	3.1e-31	4	5
ENSACLP00000035182	PPR	PF01535.20	3.1e-31	5	5
ENSACLP00000035228	PPR	PF01535.20	4.7e-15	1	3
ENSACLP00000035228	PPR	PF01535.20	4.7e-15	2	3
ENSACLP00000035228	PPR	PF01535.20	4.7e-15	3	3
ENSACLP00000035242	PPR	PF01535.20	6.6e-15	1	3
ENSACLP00000035242	PPR	PF01535.20	6.6e-15	2	3
ENSACLP00000035242	PPR	PF01535.20	6.6e-15	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000036011	-	3927	-	ENSACLP00000035182	1308 (aa)	-	-
ENSACLT00000036057	-	1500	-	ENSACLP00000035228	499 (aa)	-	-
ENSACLT00000036071	-	1581	-	ENSACLP00000035242	526 (aa)	-	-

Gene Model

Click here to download ENSACLG00000023712's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000023712's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000023712	lrpprc	92	82.241	ENSAPOG00000016610	lrpprc	96	73.300	Acanthochromis_polyacanthus
ENSACLG00000023712	lrpprc	97	51.426	ENSAMEG00000005852	LRPPRC	97	51.426	Ailuropoda_melanoleuca
ENSACLG00000023712	lrpprc	92	89.006	ENSACIG00000009604	lrpprc	95	80.091	Amphilophus_citrinellus
ENSACLG00000023712	lrpprc	92	83.298	ENSAOCG00000005886	lrpprc	96	73.381	Amphiprion_ocellaris
ENSACLG00000023712	lrpprc	92	84.314	ENSAPEG00000002937	lrpprc	98	71.708	Amphiprion_percula
ENSACLG00000023712	lrpprc	92	78.319	ENSATEG00000010555	lrpprc	96	74.403	Anabas_testudineus
ENSACLG00000023712	lrpprc	99	54.279	ENSACAG00000029278	LRPPRC	97	54.206	Anolis_carolinensis
ENSACLG00000023712	lrpprc	95	55.918	ENSANAG00000027440	LRPPRC	87	60.730	Aotus_nancymaae
ENSACLG00000023712	lrpprc	92	63.519	ENSAMXG00000004245	-	87	63.519	Astyanax_mexicanus
ENSACLG00000023712	lrpprc	96	54.564	ENSCJAG00000000794	LRPPRC	87	60.086	Callithrix_jacchus
ENSACLG00000023712	lrpprc	98	51.560	ENSCHIG00000020173	LRPPRC	98	51.223	Capra_hircus
ENSACLG00000023712	lrpprc	97	42.781	ENSCAPG00000013631	LRPPRC	97	42.781	Cavia_aperea
ENSACLG00000023712	lrpprc	88	48.318	ENSCPOG00000000204	LRPPRC	99	48.318	Cavia_porcellus
ENSACLG00000023712	lrpprc	96	55.912	ENSCCAG00000031900	LRPPRC	97	50.770	Cebus_capucinus
ENSACLG00000023712	lrpprc	92	57.759	ENSCATG00000014187	LRPPRC	89	58.159	Cercocebus_atys
ENSACLG00000023712	lrpprc	96	50.189	ENSCLAG00000005203	LRPPRC	94	50.189	Chinchilla_lanigera
ENSACLG00000023712	lrpprc	98	50.294	ENSCSAG00000013233	LRPPRC	96	50.368	Chlorocebus_sabaeus
ENSACLG00000023712	lrpprc	92	57.725	ENSCHOG00000003631	LRPPRC	80	51.217	Choloepus_hoffmanni
ENSACLG00000023712	lrpprc	98	49.887	ENSCANG00000034961	LRPPRC	99	60.068	Colobus_angolensis_palliatus
ENSACLG00000023712	lrpprc	92	56.803	ENSCGRG00001016261	Lrpprc	96	49.739	Cricetulus_griseus_chok1gshd
ENSACLG00000023712	lrpprc	92	56.803	ENSCGRG00000004072	Lrpprc	96	49.739	Cricetulus_griseus_crigri
ENSACLG00000023712	lrpprc	92	62.039	ENSCSEG00000003850	lrpprc	91	60.759	Cynoglossus_semilaevis
ENSACLG00000023712	lrpprc	92	80.973	ENSCVAG00000012967	lrpprc	96	73.057	Cyprinodon_variegatus
ENSACLG00000023712	lrpprc	91	65.199	ENSDARG00000043970	lrpprc	95	55.874	Danio_rerio
ENSACLG00000023712	lrpprc	92	57.082	ENSDNOG00000012594	-	96	51.081	Dasypus_novemcinctus
ENSACLG00000023712	lrpprc	85	51.264	ENSDNOG00000032336	-	95	41.421	Dasypus_novemcinctus
ENSACLG00000023712	lrpprc	99	50.734	ENSDORG00000012233	Lrpprc	97	50.734	Dipodomys_ordii
ENSACLG00000023712	lrpprc	99	49.890	ENSETEG00000006657	LRPPRC	97	49.890	Echinops_telfairi
ENSACLG00000023712	lrpprc	91	51.974	ENSEEUG00000012340	LRPPRC	80	54.975	Erinaceus_europaeus
ENSACLG00000023712	lrpprc	99	61.433	ENSELUG00000012803	lrpprc	99	61.433	Esox_lucius
ENSACLG00000023712	lrpprc	92	59.827	ENSFCAG00000013468	LRPPRC	96	51.711	Felis_catus
ENSACLG00000023712	lrpprc	98	48.310	ENSFALG00000012738	LRPPRC	99	48.310	Ficedula_albicollis
ENSACLG00000023712	lrpprc	92	56.317	ENSFDAG00000015328	LRPPRC	94	50.038	Fukomys_damarensis
ENSACLG00000023712	lrpprc	92	79.493	ENSFHEG00000019604	lrpprc	96	71.720	Fundulus_heteroclitus
ENSACLG00000023712	lrpprc	92	70.410	ENSGMOG00000008337	lrpprc	97	61.734	Gadus_morhua
ENSACLG00000023712	lrpprc	92	78.858	ENSGAFG00000001455	lrpprc	96	69.376	Gambusia_affinis
ENSACLG00000023712	lrpprc	92	78.541	ENSGACG00000010679	lrpprc	99	68.791	Gasterosteus_aculeatus
ENSACLG00000023712	lrpprc	79	62.217	ENSGGOG00000041704	-	99	62.129	Gorilla_gorilla
ENSACLG00000023712	lrpprc	99	87.137	ENSHBUG00000000393	lrpprc	94	87.137	Haplochromis_burtoni
ENSACLG00000023712	lrpprc	92	54.927	ENSHGLG00000006123	LRPPRC	96	48.733	Heterocephalus_glaber_female
ENSACLG00000023712	lrpprc	59	47.837	ENSHGLG00100005960	-	97	47.837	Heterocephalus_glaber_male
ENSACLG00000023712	lrpprc	92	75.738	ENSHCOG00000002107	lrpprc	96	66.592	Hippocampus_comes
ENSACLG00000023712	lrpprc	92	69.620	ENSIPUG00000009406	lrpprc	95	59.928	Ictalurus_punctatus
ENSACLG00000023712	lrpprc	92	57.569	ENSSTOG00000011185	LRPPRC	96	50.667	Ictidomys_tridecemlineatus
ENSACLG00000023712	lrpprc	98	49.926	ENSJJAG00000020475	Lrpprc	97	49.743	Jaculus_jaculus
ENSACLG00000023712	lrpprc	99	60.933	ENSKMAG00000003287	lrpprc	83	60.933	Kryptolebias_marmoratus
ENSACLG00000023712	lrpprc	92	77.440	ENSLBEG00000023225	lrpprc	91	76.180	Labrus_bergylta
ENSACLG00000023712	lrpprc	98	57.383	ENSLACG00000014030	LRPPRC	95	57.383	Latimeria_chalumnae
ENSACLG00000023712	lrpprc	92	67.149	ENSLOCG00000016390	lrpprc	92	59.647	Lepisosteus_oculatus
ENSACLG00000023712	lrpprc	92	56.540	ENSLAFG00000008614	LRPPRC	95	48.401	Loxodonta_africana
ENSACLG00000023712	lrpprc	98	50.480	ENSMFAG00000041560	LRPPRC	99	58.632	Macaca_fascicularis
ENSACLG00000023712	lrpprc	98	50.558	ENSMMUG00000019841	LRPPRC	99	55.389	Macaca_mulatta
ENSACLG00000023712	lrpprc	92	57.543	ENSMNEG00000031613	LRPPRC	88	59.615	Macaca_nemestrina
ENSACLG00000023712	lrpprc	92	77.922	ENSMAMG00000021835	lrpprc	95	70.543	Mastacembelus_armatus
ENSACLG00000023712	lrpprc	92	95.349	ENSMZEG00005027379	lrpprc	96	87.536	Maylandia_zebra
ENSACLG00000023712	lrpprc	92	57.204	ENSMAUG00000012118	Lrpprc	99	50.038	Mesocricetus_auratus
ENSACLG00000023712	lrpprc	92	58.386	ENSMICG00000010486	LRPPRC	96	50.670	Microcebus_murinus
ENSACLG00000023712	lrpprc	92	57.849	ENSMOCG00000006048	Lrpprc	96	50.638	Microtus_ochrogaster
ENSACLG00000023712	lrpprc	99	70.593	ENSMMOG00000007830	lrpprc	95	70.593	Mola_mola
ENSACLG00000023712	lrpprc	97	51.388	ENSMODG00000000648	LRPPRC	98	51.388	Monodelphis_domestica
ENSACLG00000023712	lrpprc	92	75.053	ENSMALG00000001271	lrpprc	96	66.036	Monopterus_albus
ENSACLG00000023712	lrpprc	92	58.925	ENSMPUG00000011800	LRPPRC	96	53.333	Mustela_putorius_furo
ENSACLG00000023712	lrpprc	98	51.229	ENSMLUG00000010575	LRPPRC	95	51.229	Myotis_lucifugus
ENSACLG00000023712	lrpprc	92	56.317	ENSNGAG00000013069	Lrpprc	96	49.890	Nannospalax_galili
ENSACLG00000023712	lrpprc	100	89.087	ENSNBRG00000013202	lrpprc	100	90.838	Neolamprologus_brichardi
ENSACLG00000023712	lrpprc	92	57.660	ENSNLEG00000016782	LRPPRC	96	49.554	Nomascus_leucogenys
ENSACLG00000023712	lrpprc	81	58.850	ENSOPRG00000016774	LRPPRC	79	58.850	Ochotona_princeps
ENSACLG00000023712	lrpprc	98	50.185	ENSODEG00000011211	LRPPRC	96	50.185	Octodon_degus
ENSACLG00000023712	lrpprc	92	93.235	ENSONIG00000000917	lrpprc	98	83.647	Oreochromis_niloticus
ENSACLG00000023712	lrpprc	54	46.194	ENSOANG00000014670	-	100	46.213	Ornithorhynchus_anatinus
ENSACLG00000023712	lrpprc	92	57.602	ENSOCUG00000015046	LRPPRC	92	50.957	Oryctolagus_cuniculus
ENSACLG00000023712	lrpprc	92	79.574	ENSORLG00000004605	lrpprc	99	69.434	Oryzias_latipes
ENSACLG00000023712	lrpprc	95	69.901	ENSORLG00020012536	lrpprc	99	69.383	Oryzias_latipes_hni
ENSACLG00000023712	lrpprc	92	78.936	ENSORLG00015018270	lrpprc	87	80.717	Oryzias_latipes_hsok
ENSACLG00000023712	lrpprc	92	79.303	ENSOMEG00000011863	-	92	77.707	Oryzias_melastigma
ENSACLG00000023712	lrpprc	99	50.437	ENSOGAG00000012798	LRPPRC	98	50.437	Otolemur_garnettii
ENSACLG00000023712	lrpprc	98	51.443	ENSOARG00000006522	LRPPRC	96	51.443	Ovis_aries
ENSACLG00000023712	lrpprc	98	49.926	ENSPPAG00000040876	LRPPRC	96	49.926	Pan_paniscus
ENSACLG00000023712	lrpprc	92	59.827	ENSPPRG00000006578	LRPPRC	96	51.637	Panthera_pardus
ENSACLG00000023712	lrpprc	98	51.714	ENSPTIG00000000933	LRPPRC	96	51.714	Panthera_tigris_altaica
ENSACLG00000023712	lrpprc	95	54.878	ENSPTRG00000011880	LRPPRC	88	58.333	Pan_troglodytes
ENSACLG00000023712	lrpprc	92	57.328	ENSPANG00000020731	LRPPRC	89	57.741	Papio_anubis
ENSACLG00000023712	lrpprc	94	63.453	ENSPKIG00000022232	lrpprc	98	62.582	Paramormyrops_kingsleyae
ENSACLG00000023712	lrpprc	60	53.753	ENSPSIG00000006830	-	94	54.722	Pelodiscus_sinensis
ENSACLG00000023712	lrpprc	92	75.803	ENSPMGG00000013171	-	95	76.242	Periophthalmus_magnuspinnatus
ENSACLG00000023712	lrpprc	69	63.135	ENSPMGG00000016597	lrpprc	99	63.135	Periophthalmus_magnuspinnatus
ENSACLG00000023712	lrpprc	97	43.839	ENSPMAG00000002147	lrpprc	100	43.839	Petromyzon_marinus
ENSACLG00000023712	lrpprc	92	78.013	ENSPFOG00000011227	lrpprc	98	69.253	Poecilia_formosa
ENSACLG00000023712	lrpprc	92	78.224	ENSPLAG00000004018	lrpprc	96	69.091	Poecilia_latipinna
ENSACLG00000023712	lrpprc	92	78.224	ENSPMEG00000016425	lrpprc	96	68.873	Poecilia_mexicana
ENSACLG00000023712	lrpprc	92	77.378	ENSPREG00000003662	lrpprc	96	69.158	Poecilia_reticulata
ENSACLG00000023712	lrpprc	59	47.342	ENSPPYG00000029532	-	100	47.342	Pongo_abelii
ENSACLG00000023712	lrpprc	92	57.759	ENSPCAG00000001430	LRPPRC	74	61.712	Procavia_capensis
ENSACLG00000023712	lrpprc	92	57.872	ENSPVAG00000002007	LRPPRC	97	48.777	Pteropus_vampyrus
ENSACLG00000023712	lrpprc	99	92.873	ENSPNYG00000000756	lrpprc	98	92.873	Pundamilia_nyererei
ENSACLG00000023712	lrpprc	92	69.556	ENSPNAG00000002895	lrpprc	97	62.446	Pygocentrus_nattereri
ENSACLG00000023712	lrpprc	98	49.814	ENSRNOG00000005877	Lrpprc	96	49.814	Rattus_norvegicus
ENSACLG00000023712	lrpprc	95	54.767	ENSRBIG00000031552	LRPPRC	97	49.745	Rhinopithecus_bieti
ENSACLG00000023712	lrpprc	95	54.970	ENSRROG00000042793	-	90	58.628	Rhinopithecus_roxellana
ENSACLG00000023712	lrpprc	96	55.668	ENSSBOG00000011807	LRPPRC	89	57.895	Saimiri_boliviensis_boliviensis
ENSACLG00000023712	lrpprc	97	50.112	ENSSHAG00000018725	LRPPRC	98	50.112	Sarcophilus_harrisii
ENSACLG00000023712	lrpprc	99	54.226	ENSSFOG00015001042	lrpprc	95	54.226	Scleropages_formosus
ENSACLG00000023712	lrpprc	92	70.870	ENSSMAG00000016811	-	93	69.915	Scophthalmus_maximus
ENSACLG00000023712	lrpprc	92	76.483	ENSSDUG00000019062	lrpprc	95	69.068	Seriola_dumerili
ENSACLG00000023712	lrpprc	99	61.625	ENSSLDG00000023028	lrpprc	97	61.926	Seriola_lalandi_dorsalis
ENSACLG00000023712	lrpprc	85	51.033	ENSSARG00000000426	LRPPRC	95	51.033	Sorex_araneus
ENSACLG00000023712	lrpprc	92	74.841	ENSSPAG00000000162	lrpprc	96	62.168	Stegastes_partitus
ENSACLG00000023712	lrpprc	99	50.294	ENSSSCG00000008452	LRPPRC	97	50.294	Sus_scrofa
ENSACLG00000023712	lrpprc	97	47.876	ENSTGUG00000003759	LRPPRC	100	47.876	Taeniopygia_guttata
ENSACLG00000023712	lrpprc	92	76.582	ENSTRUG00000008409	lrpprc	92	68.528	Takifugu_rubripes
ENSACLG00000023712	lrpprc	92	73.978	ENSTNIG00000007470	lrpprc	100	67.110	Tetraodon_nigroviridis
ENSACLG00000023712	lrpprc	98	49.627	ENSTTRG00000006403	LRPPRC	96	49.446	Tursiops_truncatus
ENSACLG00000023712	lrpprc	85	62.129	ENSVPAG00000008993	LRPPRC	84	62.129	Vicugna_pacos
ENSACLG00000023712	lrpprc	92	63.043	ENSXETG00000009296	lrpprc	98	54.136	Xenopus_tropicalis
ENSACLG00000023712	lrpprc	91	75.914	ENSXCOG00000013343	lrpprc	88	76.298	Xiphophorus_couchianus
ENSACLG00000023712	lrpprc	92	77.378	ENSXMAG00000018108	lrpprc	96	68.669	Xiphophorus_maculatus