EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000025552 (Gene tree)
Gene ID: 113027734
Gene Symbol: -
Alias: rbfox3
Full Name: -
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 175377 bases
Position: chr8:23030801-23206177
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000037788	Fox-1_C	PF12414.8	1.7e-44	1	1
ENSACLP00000037812	Fox-1_C	PF12414.8	2.2e-44	1	1
ENSACLP00000037773	Fox-1_C	PF12414.8	2.6e-44	1	1
ENSACLP00000037773	RRM_1	PF00076.22	1.8e-18	1	1
ENSACLP00000037812	RRM_1	PF00076.22	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000038673	-	858	-	ENSACLP00000037788	285 (aa)	-	-
ENSACLT00000038658	-	1104	-	ENSACLP00000037773	367 (aa)	-	UPI000329F06B
ENSACLT00000038696	-	1053	-	ENSACLP00000037812	350 (aa)	-	-

Gene Model

Click here to download ENSACLG00000025552's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000025552's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000025552	-	100	82.834	ENSACLG00000020011	rbfox3b	100	82.484
ENSACLG00000025552	-	60	71.681	ENSACLG00000021394	rbfox1l	96	51.042
ENSACLG00000025552	-	60	68.980	ENSACLG00000009744	rbfox2	74	55.464
ENSACLG00000025552	-	82	56.667	ENSACLG00000017380	-	81	55.523

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000025552	-	81	81.395	ENSG00000167281	RBFOX3	99	90.667	Homo_sapiens
ENSACLG00000025552	-	100	75.815	ENSAPOG00000015658	-	91	75.815	Acanthochromis_polyacanthus
ENSACLG00000025552	-	100	82.561	ENSAPOG00000021630	rbfox3b	100	81.744	Acanthochromis_polyacanthus
ENSACLG00000025552	-	89	76.590	ENSAMEG00000014170	RBFOX3	87	76.012	Ailuropoda_melanoleuca
ENSACLG00000025552	-	86	79.299	ENSACIG00000010817	rbfox3b	99	78.344	Amphilophus_citrinellus
ENSACLG00000025552	-	84	84.049	ENSACIG00000003768	-	90	84.049	Amphilophus_citrinellus
ENSACLG00000025552	-	100	82.561	ENSAOCG00000012358	rbfox3b	100	81.744	Amphiprion_ocellaris
ENSACLG00000025552	-	100	89.101	ENSAOCG00000010786	-	97	89.101	Amphiprion_ocellaris
ENSACLG00000025552	-	92	81.389	ENSAPEG00000015891	-	89	81.389	Amphiprion_percula
ENSACLG00000025552	-	100	74.387	ENSAPEG00000019081	rbfox3b	99	73.297	Amphiprion_percula
ENSACLG00000025552	-	81	85.000	ENSATEG00000023101	-	96	85.079	Anabas_testudineus
ENSACLG00000025552	-	86	74.128	ENSATEG00000019945	rbfox3b	99	75.000	Anabas_testudineus
ENSACLG00000025552	-	98	79.224	ENSACAG00000016093	RBFOX3	100	78.947	Anolis_carolinensis
ENSACLG00000025552	-	81	80.066	ENSANAG00000023457	RBFOX3	100	79.430	Aotus_nancymaae
ENSACLG00000025552	-	97	79.494	ENSAMXG00000042841	rbfox3b	100	78.652	Astyanax_mexicanus
ENSACLG00000025552	-	100	83.602	ENSAMXG00000037246	rbfox3a	100	83.871	Astyanax_mexicanus
ENSACLG00000025552	-	88	61.514	ENSBTAG00000006280	RBFOX3	100	68.072	Bos_taurus
ENSACLG00000025552	-	81	70.432	ENSCJAG00000009563	RBFOX3	100	69.697	Callithrix_jacchus
ENSACLG00000025552	-	65	89.583	ENSCAFG00000005547	RBFOX3	85	87.917	Canis_familiaris
ENSACLG00000025552	-	81	70.115	ENSCAFG00020008126	RBFOX3	96	69.972	Canis_lupus_dingo
ENSACLG00000025552	-	81	69.253	ENSCHIG00000009124	RBFOX3	96	69.972	Capra_hircus
ENSACLG00000025552	-	81	70.115	ENSTSYG00000029617	RBFOX3	100	71.350	Carlito_syrichta
ENSACLG00000025552	-	81	68.857	ENSCPOG00000021703	RBFOX3	100	69.589	Cavia_porcellus
ENSACLG00000025552	-	81	80.066	ENSCCAG00000028450	RBFOX3	100	79.430	Cebus_capucinus
ENSACLG00000025552	-	81	81.395	ENSCATG00000018349	RBFOX3	100	80.696	Cercocebus_atys
ENSACLG00000025552	-	81	69.540	ENSCLAG00000006449	RBFOX3	100	70.799	Chinchilla_lanigera
ENSACLG00000025552	-	81	81.395	ENSCSAG00000002355	RBFOX3	100	80.696	Chlorocebus_sabaeus
ENSACLG00000025552	-	89	80.368	ENSCPBG00000010904	RBFOX3	100	80.952	Chrysemys_picta_bellii
ENSACLG00000025552	-	81	81.395	ENSCANG00000043120	RBFOX3	100	80.696	Colobus_angolensis_palliatus
ENSACLG00000025552	-	81	67.335	ENSCGRG00001019476	Rbfox3	100	69.780	Cricetulus_griseus_chok1gshd
ENSACLG00000025552	-	81	67.335	ENSCGRG00000003268	Rbfox3	100	69.780	Cricetulus_griseus_crigri
ENSACLG00000025552	-	100	68.280	ENSCSEG00000020606	RBFOX3	100	67.473	Cynoglossus_semilaevis
ENSACLG00000025552	-	100	87.193	ENSCSEG00000015567	RBFOX3	97	87.193	Cynoglossus_semilaevis
ENSACLG00000025552	-	97	77.222	ENSCVAG00000006882	rbfox3b	98	76.389	Cyprinodon_variegatus
ENSACLG00000025552	-	98	66.890	ENSDARG00000074310	rbfox3b	97	86.154	Danio_rerio
ENSACLG00000025552	-	100	84.367	ENSDARG00000010083	rbfox3a	100	84.636	Danio_rerio
ENSACLG00000025552	-	68	69.360	ENSDNOG00000039391	RBFOX3	96	62.466	Dasypus_novemcinctus
ENSACLG00000025552	-	88	53.356	ENSDORG00000005352	Rbfox3	100	60.111	Dipodomys_ordii
ENSACLG00000025552	-	97	63.807	ENSEBUG00000002129	RBFOX3	95	67.836	Eptatretus_burgeri
ENSACLG00000025552	-	82	53.091	ENSEBUG00000013559	RBFOX3	81	57.679	Eptatretus_burgeri
ENSACLG00000025552	-	81	79.139	ENSEASG00005005059	RBFOX3	100	81.073	Equus_asinus_asinus
ENSACLG00000025552	-	81	78.808	ENSECAG00000023811	RBFOX3	100	80.757	Equus_caballus
ENSACLG00000025552	-	75	81.690	ENSEEUG00000013974	RBFOX3	76	89.333	Erinaceus_europaeus
ENSACLG00000025552	-	100	81.744	ENSELUG00000017963	rbfox3b	100	81.818	Esox_lucius
ENSACLG00000025552	-	98	80.110	ENSFCAG00000002555	RBFOX3	100	79.558	Felis_catus
ENSACLG00000025552	-	89	65.738	ENSFALG00000012288	RBFOX3	88	66.295	Ficedula_albicollis
ENSACLG00000025552	-	81	64.000	ENSFDAG00000007489	RBFOX3	100	64.932	Fukomys_damarensis
ENSACLG00000025552	-	93	75.972	ENSFHEG00000008550	rbfox3b	100	81.272	Fundulus_heteroclitus
ENSACLG00000025552	-	86	62.707	ENSGMOG00000019304	-	96	62.431	Gadus_morhua
ENSACLG00000025552	-	98	81.944	ENSGALG00000032889	RBFOX3	100	81.389	Gallus_gallus
ENSACLG00000025552	-	100	76.294	ENSGAFG00000005025	rbfox3b	99	75.477	Gambusia_affinis
ENSACLG00000025552	-	81	74.785	ENSGACG00000002138	-	96	76.099	Gasterosteus_aculeatus
ENSACLG00000025552	-	98	81.111	ENSGAGG00000020025	RBFOX3	100	81.270	Gopherus_agassizii
ENSACLG00000025552	-	81	81.395	ENSGGOG00000012546	RBFOX3	100	80.696	Gorilla_gorilla
ENSACLG00000025552	-	89	99.693	ENSHBUG00000023098	-	94	99.693	Haplochromis_burtoni
ENSACLG00000025552	-	100	82.834	ENSHBUG00000018099	rbfox3b	96	82.016	Haplochromis_burtoni
ENSACLG00000025552	-	81	68.466	ENSHGLG00000008679	RBFOX3	100	69.755	Heterocephalus_glaber_female
ENSACLG00000025552	-	81	64.773	ENSHGLG00100014739	RBFOX3	96	66.757	Heterocephalus_glaber_male
ENSACLG00000025552	-	86	79.618	ENSHCOG00000001863	RBFOX3	92	79.618	Hippocampus_comes
ENSACLG00000025552	-	82	74.086	ENSHCOG00000007444	RBFOX3	82	72.188	Hippocampus_comes
ENSACLG00000025552	-	100	81.941	ENSIPUG00000012010	rbfox3a	100	82.210	Ictalurus_punctatus
ENSACLG00000025552	-	86	67.052	ENSIPUG00000021966	rbfox3b	94	75.889	Ictalurus_punctatus
ENSACLG00000025552	-	81	67.110	ENSSTOG00000026817	RBFOX3	100	67.722	Ictidomys_tridecemlineatus
ENSACLG00000025552	-	81	68.678	ENSJJAG00000014167	Rbfox3	100	70.248	Jaculus_jaculus
ENSACLG00000025552	-	100	82.289	ENSKMAG00000006726	rbfox3b	100	81.471	Kryptolebias_marmoratus
ENSACLG00000025552	-	100	82.834	ENSLBEG00000004030	rbfox3b	100	82.016	Labrus_bergylta
ENSACLG00000025552	-	100	92.098	ENSLBEG00000022508	-	100	92.098	Labrus_bergylta
ENSACLG00000025552	-	89	72.113	ENSLACG00000018409	-	90	72.113	Latimeria_chalumnae
ENSACLG00000025552	-	50	59.140	ENSLACG00000000021	-	95	59.140	Latimeria_chalumnae
ENSACLG00000025552	-	89	87.730	ENSLOCG00000012267	rbfox3a	98	87.730	Lepisosteus_oculatus
ENSACLG00000025552	-	89	74.157	ENSLAFG00000016623	RBFOX3	96	70.994	Loxodonta_africana
ENSACLG00000025552	-	81	69.540	ENSMFAG00000002247	RBFOX3	100	70.248	Macaca_fascicularis
ENSACLG00000025552	-	81	81.395	ENSMMUG00000023028	RBFOX3	100	80.696	Macaca_mulatta
ENSACLG00000025552	-	81	81.063	ENSMNEG00000041147	RBFOX3	100	80.380	Macaca_nemestrina
ENSACLG00000025552	-	81	81.395	ENSMLEG00000025686	RBFOX3	100	80.696	Mandrillus_leucophaeus
ENSACLG00000025552	-	86	75.796	ENSMAMG00000019810	rbfox3b	99	74.841	Mastacembelus_armatus
ENSACLG00000025552	-	89	86.196	ENSMAMG00000020600	-	93	86.196	Mastacembelus_armatus
ENSACLG00000025552	-	100	82.834	ENSMZEG00005000781	rbfox3b	100	82.016	Maylandia_zebra
ENSACLG00000025552	-	83	77.448	ENSMZEG00005003055	-	81	77.448	Maylandia_zebra
ENSACLG00000025552	-	60	77.376	ENSMGAG00000005600	RBFOX3	83	78.281	Meleagris_gallopavo
ENSACLG00000025552	-	81	68.678	ENSMAUG00000013543	Rbfox3	100	69.146	Mesocricetus_auratus
ENSACLG00000025552	-	88	79.755	ENSMICG00000014898	RBFOX3	100	79.747	Microcebus_murinus
ENSACLG00000025552	-	81	70.402	ENSMOCG00000015373	Rbfox3	100	70.799	Microtus_ochrogaster
ENSACLG00000025552	-	100	78.108	ENSMMOG00000020193	rbfox3b	96	78.108	Mola_mola
ENSACLG00000025552	-	98	80.609	ENSMODG00000002089	RBFOX3	100	80.055	Monodelphis_domestica
ENSACLG00000025552	-	100	90.463	ENSMALG00000018270	-	100	90.463	Monopterus_albus
ENSACLG00000025552	-	100	82.289	ENSMALG00000020407	rbfox3b	100	81.471	Monopterus_albus
ENSACLG00000025552	-	81	80.731	MGP_CAROLIEiJ_G0017487	Rbfox3	96	87.770	Mus_caroli
ENSACLG00000025552	-	81	80.399	ENSMUSG00000025576	Rbfox3	96	87.770	Mus_musculus
ENSACLG00000025552	-	81	78.477	MGP_PahariEiJ_G0018614	Rbfox3	96	88.489	Mus_pahari
ENSACLG00000025552	-	81	81.063	MGP_SPRETEiJ_G0018331	Rbfox3	96	87.770	Mus_spretus
ENSACLG00000025552	-	90	73.098	ENSMPUG00000012319	RBFOX3	95	72.554	Mustela_putorius_furo
ENSACLG00000025552	-	81	70.690	ENSNGAG00000018006	Rbfox3	100	71.074	Nannospalax_galili
ENSACLG00000025552	-	90	89.458	ENSNBRG00000022885	-	91	89.458	Neolamprologus_brichardi
ENSACLG00000025552	-	97	76.667	ENSNBRG00000010102	rbfox3b	98	75.833	Neolamprologus_brichardi
ENSACLG00000025552	-	60	92.593	ENSNLEG00000000153	-	82	92.593	Nomascus_leucogenys
ENSACLG00000025552	-	81	49.568	ENSMEUG00000004218	-	100	50.829	Notamacropus_eugenii
ENSACLG00000025552	-	68	86.885	ENSOPRG00000016279	-	71	85.246	Ochotona_princeps
ENSACLG00000025552	-	81	81.395	ENSODEG00000009433	RBFOX3	100	81.329	Octodon_degus
ENSACLG00000025552	-	89	99.077	ENSONIG00000007282	-	95	99.077	Oreochromis_niloticus
ENSACLG00000025552	-	97	77.500	ENSONIG00000009549	rbfox3b	98	76.667	Oreochromis_niloticus
ENSACLG00000025552	-	70	60.333	ENSOCUG00000014217	RBFOX3	82	60.000	Oryctolagus_cuniculus
ENSACLG00000025552	-	100	82.561	ENSORLG00000000905	rbfox3b	79	81.199	Oryzias_latipes
ENSACLG00000025552	-	100	82.561	ENSORLG00020018030	rbfox3b	99	81.199	Oryzias_latipes_hni
ENSACLG00000025552	-	100	82.289	ENSORLG00015009200	rbfox3b	99	81.471	Oryzias_latipes_hsok
ENSACLG00000025552	-	80	77.419	ENSOMEG00000014677	rbfox3b	86	76.147	Oryzias_melastigma
ENSACLG00000025552	-	89	79.697	ENSOGAG00000029595	RBFOX3	87	79.091	Otolemur_garnettii
ENSACLG00000025552	-	88	61.017	ENSOARG00000002908	RBFOX3	100	50.255	Ovis_aries
ENSACLG00000025552	-	69	80.392	ENSPPAG00000025383	RBFOX3	95	80.797	Pan_paniscus
ENSACLG00000025552	-	81	69.006	ENSPPRG00000007819	RBFOX3	100	70.588	Panthera_pardus
ENSACLG00000025552	-	81	81.395	ENSPTRG00000009727	RBFOX3	100	80.696	Pan_troglodytes
ENSACLG00000025552	-	81	81.395	ENSPANG00000019837	RBFOX3	100	80.696	Papio_anubis
ENSACLG00000025552	-	98	64.820	ENSPKIG00000022633	-	100	64.244	Paramormyrops_kingsleyae
ENSACLG00000025552	-	100	85.470	ENSPKIG00000010299	rbfox3a	100	85.470	Paramormyrops_kingsleyae
ENSACLG00000025552	-	87	78.019	ENSPMGG00000008000	rbfox3b	100	79.077	Periophthalmus_magnuspinnatus
ENSACLG00000025552	-	81	70.115	ENSPEMG00000010500	Rbfox3	100	70.523	Peromyscus_maniculatus_bairdii
ENSACLG00000025552	-	51	72.152	ENSPMAG00000008689	rbfox3b	93	76.316	Petromyzon_marinus
ENSACLG00000025552	-	98	70.343	ENSPCIG00000005766	RBFOX3	100	78.521	Phascolarctos_cinereus
ENSACLG00000025552	-	97	77.222	ENSPFOG00000018294	rbfox3b	94	76.389	Poecilia_formosa
ENSACLG00000025552	-	67	83.265	ENSPLAG00000000481	rbfox3b	75	82.041	Poecilia_latipinna
ENSACLG00000025552	-	93	75.618	ENSPMEG00000022997	rbfox3b	100	80.919	Poecilia_mexicana
ENSACLG00000025552	-	100	82.609	ENSPREG00000012886	rbfox3b	99	82.065	Poecilia_reticulata
ENSACLG00000025552	-	76	73.759	ENSPPYG00000008704	RBFOX3	100	60.234	Pongo_abelii
ENSACLG00000025552	-	81	67.341	ENSPCAG00000001401	RBFOX3	100	69.529	Procavia_capensis
ENSACLG00000025552	-	86	69.146	ENSPCOG00000012689	RBFOX3	100	69.421	Propithecus_coquereli
ENSACLG00000025552	-	81	59.195	ENSPVAG00000015243	RBFOX3	100	63.361	Pteropus_vampyrus
ENSACLG00000025552	-	100	93.733	ENSPNYG00000009079	-	96	93.733	Pundamilia_nyererei
ENSACLG00000025552	-	100	72.752	ENSPNYG00000010414	rbfox3b	99	72.752	Pundamilia_nyererei
ENSACLG00000025552	-	100	83.871	ENSPNAG00000002889	rbfox3a	100	84.140	Pygocentrus_nattereri
ENSACLG00000025552	-	93	67.845	ENSPNAG00000018173	rbfox3b	91	72.632	Pygocentrus_nattereri
ENSACLG00000025552	-	81	78.477	ENSRNOG00000003386	Rbfox3	100	80.757	Rattus_norvegicus
ENSACLG00000025552	-	98	80.663	ENSRBIG00000040449	RBFOX3	100	80.110	Rhinopithecus_bieti
ENSACLG00000025552	-	81	81.395	ENSRROG00000000766	RBFOX3	100	80.696	Rhinopithecus_roxellana
ENSACLG00000025552	-	81	80.066	ENSSBOG00000031591	RBFOX3	100	79.430	Saimiri_boliviensis_boliviensis
ENSACLG00000025552	-	89	73.816	ENSSHAG00000016076	RBFOX3	100	78.521	Sarcophilus_harrisii
ENSACLG00000025552	-	96	86.350	ENSSFOG00015023260	rbfox3a	100	86.350	Scleropages_formosus
ENSACLG00000025552	-	98	68.219	ENSSFOG00015004716	RBFOX3	100	70.914	Scleropages_formosus
ENSACLG00000025552	-	100	87.738	ENSSMAG00000019052	-	100	87.738	Scophthalmus_maximus
ENSACLG00000025552	-	99	71.355	ENSSMAG00000012618	rbfox3b	88	71.100	Scophthalmus_maximus
ENSACLG00000025552	-	93	75.972	ENSSDUG00000023183	rbfox3b	100	81.272	Seriola_dumerili
ENSACLG00000025552	-	100	85.014	ENSSDUG00000015801	-	98	85.014	Seriola_dumerili
ENSACLG00000025552	-	100	88.011	ENSSLDG00000016098	-	98	88.011	Seriola_lalandi_dorsalis
ENSACLG00000025552	-	100	82.834	ENSSLDG00000000149	rbfox3b	100	82.016	Seriola_lalandi_dorsalis
ENSACLG00000025552	-	94	77.812	ENSSPUG00000011733	RBFOX3	99	81.013	Sphenodon_punctatus
ENSACLG00000025552	-	100	74.932	ENSSPAG00000017571	rbfox3b	99	74.114	Stegastes_partitus
ENSACLG00000025552	-	74	84.191	ENSSPAG00000004898	-	85	84.321	Stegastes_partitus
ENSACLG00000025552	-	74	84.191	ENSSSCG00000039498	RBFOX3	96	71.787	Sus_scrofa
ENSACLG00000025552	-	89	77.612	ENSTRUG00000004894	rbfox3b	94	77.612	Takifugu_rubripes
ENSACLG00000025552	-	89	74.302	ENSTNIG00000011278	rbfox3b	89	73.464	Tetraodon_nigroviridis
ENSACLG00000025552	-	57	54.874	ENSTBEG00000004296	-	100	48.396	Tupaia_belangeri
ENSACLG00000025552	-	81	63.689	ENSTTRG00000003676	RBFOX3	100	64.641	Tursiops_truncatus
ENSACLG00000025552	-	81	80.731	ENSUAMG00000004668	RBFOX3	100	80.063	Ursus_americanus
ENSACLG00000025552	-	98	80.939	ENSVVUG00000017864	RBFOX3	100	80.380	Vulpes_vulpes
ENSACLG00000025552	-	89	64.286	ENSXETG00000020236	rbfox3	88	64.857	Xenopus_tropicalis
ENSACLG00000025552	-	97	76.731	ENSXCOG00000018262	rbfox3b	100	77.636	Xiphophorus_couchianus
ENSACLG00000025552	-	100	82.834	ENSXMAG00000012939	rbfox3b	96	82.016	Xiphophorus_maculatus