EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000026031 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 4353 bases
Position: chr15:35112830-35117182
Accession: ZDB-GENE-030131-6986
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000038574	RRM_1	PF00076.22	1.1e-51	1	3
ENSACLP00000038574	RRM_1	PF00076.22	1.1e-51	2	3
ENSACLP00000038574	RRM_1	PF00076.22	1.1e-51	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000039487	-	1101	-	ENSACLP00000038574	366 (aa)	-	-

Gene Model

Click here to download ENSACLG00000026031's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000026031's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000026031	ncl	83	32.353	ENSACLG00000009399	pabpc1a	65	33.088
ENSACLG00000026031	ncl	87	35.938	ENSACLG00000009613	-	73	35.505
ENSACLG00000026031	ncl	83	31.481	ENSACLG00000024791	pabpc1l	57	32.895

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000026031	ncl	89	41.311	ENSAPOG00000014534	-	55	41.745	Acanthochromis_polyacanthus
ENSACLG00000026031	ncl	82	89.037	ENSACIG00000013234	ncl	51	89.037	Amphilophus_citrinellus
ENSACLG00000026031	ncl	92	40.336	ENSAOCG00000014792	-	50	41.486	Amphiprion_ocellaris
ENSACLG00000026031	ncl	92	40.000	ENSAPEG00000013612	-	50	41.486	Amphiprion_percula
ENSACLG00000026031	ncl	94	75.287	ENSATEG00000013343	ncl	51	75.287	Anabas_testudineus
ENSACLG00000026031	ncl	94	44.772	ENSATEG00000019862	-	72	43.714	Anabas_testudineus
ENSACLG00000026031	ncl	85	60.450	ENSAPLG00000012897	-	62	60.450	Anas_platyrhynchos
ENSACLG00000026031	ncl	82	66.885	ENSAMXG00000001647	ncl	81	66.777	Astyanax_mexicanus
ENSACLG00000026031	ncl	83	48.858	ENSCHIG00000003401	-	52	47.321	Capra_hircus
ENSACLG00000026031	ncl	85	65.049	ENSCPBG00000016444	-	55	64.935	Chrysemys_picta_bellii
ENSACLG00000026031	ncl	85	72.785	ENSCSEG00000015089	ncl	60	70.659	Cynoglossus_semilaevis
ENSACLG00000026031	ncl	85	71.803	ENSDARG00000002710	ncl	79	71.803	Danio_rerio
ENSACLG00000026031	ncl	82	47.059	ENSDNOG00000040257	-	50	47.368	Dasypus_novemcinctus
ENSACLG00000026031	ncl	63	53.425	ENSDNOG00000040440	-	96	53.191	Dasypus_novemcinctus
ENSACLG00000026031	ncl	88	43.034	ENSDNOG00000031611	-	62	44.371	Dasypus_novemcinctus
ENSACLG00000026031	ncl	83	68.065	ENSELUG00000006033	ncl	51	67.018	Esox_lucius
ENSACLG00000026031	ncl	94	49.575	ENSELUG00000022826	-	83	48.424	Esox_lucius
ENSACLG00000026031	ncl	85	75.658	ENSFHEG00000018000	ncl	61	74.919	Fundulus_heteroclitus
ENSACLG00000026031	ncl	85	61.093	ENSGALG00000032930	NCL	51	61.093	Gallus_gallus
ENSACLG00000026031	ncl	88	74.398	ENSGACG00000008970	ncl	54	74.398	Gasterosteus_aculeatus
ENSACLG00000026031	ncl	82	95.050	ENSHBUG00000006869	ncl	52	95.050	Haplochromis_burtoni
ENSACLG00000026031	ncl	85	74.426	ENSHCOG00000010234	ncl	52	74.426	Hippocampus_comes
ENSACLG00000026031	ncl	84	66.990	ENSIPUG00000024556	ncl	79	67.638	Ictalurus_punctatus
ENSACLG00000026031	ncl	87	43.750	ENSLBEG00000007915	-	54	43.574	Labrus_bergylta
ENSACLG00000026031	ncl	85	78.846	ENSLBEG00000019073	ncl	56	78.846	Labrus_bergylta
ENSACLG00000026031	ncl	87	43.195	ENSLBEG00000014278	-	72	43.574	Labrus_bergylta
ENSACLG00000026031	ncl	87	52.147	ENSLACG00000022167	-	65	52.614	Latimeria_chalumnae
ENSACLG00000026031	ncl	92	62.059	ENSLACG00000009328	ncl	58	64.401	Latimeria_chalumnae
ENSACLG00000026031	ncl	91	41.595	ENSMAMG00000003479	-	58	41.693	Mastacembelus_armatus
ENSACLG00000026031	ncl	82	95.380	ENSMZEG00005017438	ncl	52	95.380	Maylandia_zebra
ENSACLG00000026031	ncl	82	60.450	ENSMGAG00000008147	-	80	61.947	Meleagris_gallopavo
ENSACLG00000026031	ncl	86	76.656	ENSMMOG00000008553	ncl	85	77.918	Mola_mola
ENSACLG00000026031	ncl	89	77.660	ENSMALG00000014827	ncl	54	77.660	Monopterus_albus
ENSACLG00000026031	ncl	84	46.008	ENSMPUG00000001663	-	57	46.008	Mustela_putorius_furo
ENSACLG00000026031	ncl	76	94.624	ENSNBRG00000001232	ncl	79	94.624	Neolamprologus_brichardi
ENSACLG00000026031	ncl	76	94.624	ENSNBRG00000000146	-	82	94.624	Neolamprologus_brichardi
ENSACLG00000026031	ncl	83	37.540	ENSONIG00000010631	-	78	37.705	Oreochromis_niloticus
ENSACLG00000026031	ncl	82	95.050	ENSONIG00000012508	ncl	52	95.050	Oreochromis_niloticus
ENSACLG00000026031	ncl	98	57.182	ENSOANG00000008732	-	56	61.093	Ornithorhynchus_anatinus
ENSACLG00000026031	ncl	87	38.855	ENSORLG00000004645	-	69	40.575	Oryzias_latipes
ENSACLG00000026031	ncl	87	38.855	ENSORLG00020003497	-	62	40.575	Oryzias_latipes_hni
ENSACLG00000026031	ncl	87	39.157	ENSORLG00015006613	-	64	40.823	Oryzias_latipes_hsok
ENSACLG00000026031	ncl	84	74.920	ENSORLG00015013815	ncl	86	75.241	Oryzias_latipes_hsok
ENSACLG00000026031	ncl	86	40.060	ENSOMEG00000015864	-	68	40.317	Oryzias_melastigma
ENSACLG00000026031	ncl	85	71.336	ENSPKIG00000002604	ncl	52	71.475	Paramormyrops_kingsleyae
ENSACLG00000026031	ncl	86	61.465	ENSPSIG00000002361	-	53	62.102	Pelodiscus_sinensis
ENSACLG00000026031	ncl	84	69.903	ENSPMGG00000004709	ncl	80	70.130	Periophthalmus_magnuspinnatus
ENSACLG00000026031	ncl	82	95.380	ENSPNYG00000020494	ncl	53	95.380	Pundamilia_nyererei
ENSACLG00000026031	ncl	85	53.922	ENSSHAG00000002702	-	57	50.720	Sarcophilus_harrisii
ENSACLG00000026031	ncl	85	72.168	ENSSFOG00015008583	ncl	57	71.613	Scleropages_formosus
ENSACLG00000026031	ncl	96	43.137	ENSSFOG00015013153	-	77	45.277	Scleropages_formosus
ENSACLG00000026031	ncl	87	42.985	ENSSMAG00000007582	-	51	44.268	Scophthalmus_maximus
ENSACLG00000026031	ncl	85	79.677	ENSSDUG00000006128	ncl	85	79.677	Seriola_dumerili
ENSACLG00000026031	ncl	87	43.917	ENSSDUG00000010922	-	59	44.340	Seriola_dumerili
ENSACLG00000026031	ncl	85	78.526	ENSSLDG00000002012	ncl	53	78.526	Seriola_lalandi_dorsalis
ENSACLG00000026031	ncl	95	41.240	ENSSLDG00000015784	-	60	43.059	Seriola_lalandi_dorsalis
ENSACLG00000026031	ncl	83	61.059	ENSSPUG00000008244	-	60	60.938	Sphenodon_punctatus
ENSACLG00000026031	ncl	76	77.305	ENSSPAG00000002637	ncl	79	77.305	Stegastes_partitus
ENSACLG00000026031	ncl	91	42.407	ENSSPAG00000001859	-	51	42.405	Stegastes_partitus
ENSACLG00000026031	ncl	85	73.026	ENSTNIG00000012186	ncl	50	72.876	Tetraodon_nigroviridis
ENSACLG00000026031	ncl	87	60.645	ENSXCOG00000003524	ncl	87	60.897	Xiphophorus_couchianus
ENSACLG00000026031	ncl	89	37.758	ENSXCOG00000007369	-	74	39.172	Xiphophorus_couchianus