EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000027220 (Gene tree)
Gene ID: 113015975
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 15015 bases
Position: chr23:32188133-32203147
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000040439	RRM_1	PF00076.22	5.7e-31	1	2
ENSACLP00000040439	RRM_1	PF00076.22	5.7e-31	2	2
ENSACLP00000040431	RRM_1	PF00076.22	8e-31	1	2
ENSACLP00000040431	RRM_1	PF00076.22	8e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000041383	-	1497	-	ENSACLP00000040431	498 (aa)	-	-
ENSACLT00000041392	-	1428	-	ENSACLP00000040439	475 (aa)	-	-

Gene Model

Click here to download ENSACLG00000027220's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000027220's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000027220	pspc1	78	52.130	ENSACLG00000012045	nono	98	54.948
ENSACLG00000027220	pspc1	65	58.075	ENSACLG00000022332	sfpq	55	53.409

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000027220	pspc1	87	58.887	ENSG00000121390	PSPC1	99	62.935	Homo_sapiens
ENSACLG00000027220	pspc1	100	76.806	ENSAPOG00000015946	pspc1	99	78.538	Acanthochromis_polyacanthus
ENSACLG00000027220	pspc1	100	54.545	ENSAMEG00000017420	PSPC1	99	57.463	Ailuropoda_melanoleuca
ENSACLG00000027220	pspc1	100	85.913	ENSACIG00000018695	pspc1	100	85.714	Amphilophus_citrinellus
ENSACLG00000027220	pspc1	100	76.705	ENSAOCG00000005279	pspc1	100	77.333	Amphiprion_ocellaris
ENSACLG00000027220	pspc1	100	77.143	ENSAPEG00000015927	pspc1	100	77.969	Amphiprion_percula
ENSACLG00000027220	pspc1	100	77.132	ENSATEG00000004878	pspc1	100	76.062	Anabas_testudineus
ENSACLG00000027220	pspc1	75	56.479	ENSAPLG00000006246	PSPC1	100	57.389	Anas_platyrhynchos
ENSACLG00000027220	pspc1	57	66.308	ENSAPLG00000003643	SFPQ	54	66.308	Anas_platyrhynchos
ENSACLG00000027220	pspc1	88	57.764	ENSACAG00000002093	PSPC1	99	54.917	Anolis_carolinensis
ENSACLG00000027220	pspc1	100	56.333	ENSANAG00000000059	PSPC1	99	61.750	Aotus_nancymaae
ENSACLG00000027220	pspc1	100	56.881	ENSAMXG00000036881	pspc1	100	59.815	Astyanax_mexicanus
ENSACLG00000027220	pspc1	100	58.462	ENSBTAG00000003934	PSPC1	99	58.286	Bos_taurus
ENSACLG00000027220	pspc1	100	54.820	ENSCJAG00000004554	PSPC1	99	57.491	Callithrix_jacchus
ENSACLG00000027220	pspc1	87	58.887	ENSCAFG00020002009	PSPC1	98	63.980	Canis_lupus_dingo
ENSACLG00000027220	pspc1	100	54.972	ENSCHIG00000016708	PSPC1	99	57.678	Capra_hircus
ENSACLG00000027220	pspc1	74	61.929	ENSTSYG00000032882	PSPC1	88	62.879	Carlito_syrichta
ENSACLG00000027220	pspc1	87	58.672	ENSCPOG00000000395	PSPC1	99	63.409	Cavia_porcellus
ENSACLG00000027220	pspc1	100	54.059	ENSCCAG00000033498	PSPC1	99	57.090	Cebus_capucinus
ENSACLG00000027220	pspc1	87	58.672	ENSCATG00000036434	PSPC1	90	72.000	Cercocebus_atys
ENSACLG00000027220	pspc1	77	55.875	ENSCLAG00000005241	PSPC1	89	60.644	Chinchilla_lanigera
ENSACLG00000027220	pspc1	100	53.676	ENSCHOG00000008913	PSPC1	99	56.881	Choloepus_hoffmanni
ENSACLG00000027220	pspc1	89	58.316	ENSCPBG00000020859	PSPC1	88	59.698	Chrysemys_picta_bellii
ENSACLG00000027220	pspc1	76	59.949	ENSCANG00000018948	PSPC1	89	70.632	Colobus_angolensis_palliatus
ENSACLG00000027220	pspc1	100	53.959	ENSCGRG00001018368	Pspc1	99	57.037	Cricetulus_griseus_chok1gshd
ENSACLG00000027220	pspc1	100	53.959	ENSCGRG00000011724	Pspc1	99	57.037	Cricetulus_griseus_crigri
ENSACLG00000027220	pspc1	100	72.287	ENSCVAG00000007679	-	100	73.099	Cyprinodon_variegatus
ENSACLG00000027220	pspc1	100	57.411	ENSDARG00000006621	pspc1	100	60.891	Danio_rerio
ENSACLG00000027220	pspc1	87	58.887	ENSDNOG00000011078	PSPC1	99	57.301	Dasypus_novemcinctus
ENSACLG00000027220	pspc1	100	52.022	ENSDORG00000016050	Pspc1	99	54.935	Dipodomys_ordii
ENSACLG00000027220	pspc1	90	46.800	ENSEBUG00000003964	-	65	57.219	Eptatretus_burgeri
ENSACLG00000027220	pspc1	55	45.517	ENSEBUG00000010133	pspc1	76	45.517	Eptatretus_burgeri
ENSACLG00000027220	pspc1	100	54.972	ENSEASG00005000119	PSPC1	99	63.000	Equus_asinus_asinus
ENSACLG00000027220	pspc1	100	54.972	ENSECAG00000017286	PSPC1	99	63.000	Equus_caballus
ENSACLG00000027220	pspc1	55	68.462	ENSEEUG00000011288	-	51	68.462	Erinaceus_europaeus
ENSACLG00000027220	pspc1	100	60.623	ENSELUG00000003746	pspc1	98	63.507	Esox_lucius
ENSACLG00000027220	pspc1	87	59.101	ENSFCAG00000027841	PSPC1	98	63.728	Felis_catus
ENSACLG00000027220	pspc1	99	53.846	ENSFALG00000008750	PSPC1	99	54.275	Ficedula_albicollis
ENSACLG00000027220	pspc1	100	54.597	ENSFDAG00000002617	PSPC1	99	57.439	Fukomys_damarensis
ENSACLG00000027220	pspc1	96	66.223	ENSGMOG00000015074	pspc1	84	71.429	Gadus_morhua
ENSACLG00000027220	pspc1	87	58.887	ENSGALG00000017142	PSPC1	99	54.597	Gallus_gallus
ENSACLG00000027220	pspc1	82	72.167	ENSGAFG00000006327	pspc1	83	73.697	Gambusia_affinis
ENSACLG00000027220	pspc1	100	66.092	ENSGACG00000014901	pspc1	98	73.429	Gasterosteus_aculeatus
ENSACLG00000027220	pspc1	89	58.316	ENSGAGG00000019164	PSPC1	88	59.698	Gopherus_agassizii
ENSACLG00000027220	pspc1	87	58.887	ENSGGOG00000003414	PSPC1	99	62.935	Gorilla_gorilla
ENSACLG00000027220	pspc1	100	89.038	ENSHBUG00000001139	pspc1	100	90.329	Haplochromis_burtoni
ENSACLG00000027220	pspc1	100	54.833	ENSHGLG00000018811	PSPC1	99	57.649	Heterocephalus_glaber_female
ENSACLG00000027220	pspc1	55	76.806	ENSHGLG00100007962	PSPC1	80	76.806	Heterocephalus_glaber_male
ENSACLG00000027220	pspc1	80	69.157	ENSHCOG00000013251	pspc1	99	67.261	Hippocampus_comes
ENSACLG00000027220	pspc1	100	61.224	ENSIPUG00000013192	pspc1	100	63.060	Ictalurus_punctatus
ENSACLG00000027220	pspc1	100	53.860	ENSSTOG00000026833	PSPC1	99	64.141	Ictidomys_tridecemlineatus
ENSACLG00000027220	pspc1	87	59.101	ENSJJAG00000018334	Pspc1	99	56.881	Jaculus_jaculus
ENSACLG00000027220	pspc1	100	65.737	ENSKMAG00000013525	-	100	65.139	Kryptolebias_marmoratus
ENSACLG00000027220	pspc1	98	75.100	ENSLBEG00000004474	pspc1	99	75.100	Labrus_bergylta
ENSACLG00000027220	pspc1	100	52.778	ENSLACG00000010762	PSPC1	100	56.262	Latimeria_chalumnae
ENSACLG00000027220	pspc1	100	59.176	ENSLOCG00000010832	pspc1	99	61.090	Lepisosteus_oculatus
ENSACLG00000027220	pspc1	87	58.887	ENSLAFG00000010968	PSPC1	99	57.463	Loxodonta_africana
ENSACLG00000027220	pspc1	87	58.672	ENSMFAG00000032728	PSPC1	93	70.783	Macaca_fascicularis
ENSACLG00000027220	pspc1	87	58.672	ENSMMUG00000020262	PSPC1	88	71.865	Macaca_mulatta
ENSACLG00000027220	pspc1	87	58.672	ENSMNEG00000027401	PSPC1	98	58.526	Macaca_nemestrina
ENSACLG00000027220	pspc1	74	56.543	ENSMLEG00000039043	PSPC1	94	60.345	Mandrillus_leucophaeus
ENSACLG00000027220	pspc1	100	75.977	ENSMAMG00000004333	pspc1	100	75.781	Mastacembelus_armatus
ENSACLG00000027220	pspc1	100	100.000	ENSMZEG00005005726	pspc1	100	100.000	Maylandia_zebra
ENSACLG00000027220	pspc1	76	56.448	ENSMGAG00000015134	PSPC1	100	57.353	Meleagris_gallopavo
ENSACLG00000027220	pspc1	88	58.547	ENSMAUG00000021067	Pspc1	99	58.761	Mesocricetus_auratus
ENSACLG00000027220	pspc1	87	60.256	ENSMICG00000013970	PSPC1	99	62.531	Microcebus_murinus
ENSACLG00000027220	pspc1	87	58.244	ENSMOCG00000006060	Pspc1	99	56.296	Microtus_ochrogaster
ENSACLG00000027220	pspc1	90	89.286	ENSMMOG00000004352	pspc1	75	88.889	Mola_mola
ENSACLG00000027220	pspc1	77	61.687	ENSMODG00000008029	PSPC1	76	58.884	Monodelphis_domestica
ENSACLG00000027220	pspc1	100	76.305	ENSMALG00000008914	pspc1	100	75.502	Monopterus_albus
ENSACLG00000027220	pspc1	100	53.761	MGP_CAROLIEiJ_G0019341	Pspc1	99	55.765	Mus_caroli
ENSACLG00000027220	pspc1	100	53.945	ENSMUSG00000021938	Pspc1	99	55.765	Mus_musculus
ENSACLG00000027220	pspc1	100	53.761	MGP_PahariEiJ_G0030359	Pspc1	99	55.765	Mus_pahari
ENSACLG00000027220	pspc1	100	53.945	MGP_SPRETEiJ_G0020232	Pspc1	99	55.765	Mus_spretus
ENSACLG00000027220	pspc1	87	58.887	ENSMPUG00000013347	PSPC1	99	57.649	Mustela_putorius_furo
ENSACLG00000027220	pspc1	87	58.351	ENSMLUG00000017663	PSPC1	99	56.960	Myotis_lucifugus
ENSACLG00000027220	pspc1	100	54.228	ENSNGAG00000011271	Pspc1	99	57.196	Nannospalax_galili
ENSACLG00000027220	pspc1	87	97.101	ENSNBRG00000014059	pspc1	99	97.101	Neolamprologus_brichardi
ENSACLG00000027220	pspc1	87	58.887	ENSNLEG00000001294	PSPC1	88	62.313	Nomascus_leucogenys
ENSACLG00000027220	pspc1	87	53.236	ENSODEG00000007817	-	99	54.095	Octodon_degus
ENSACLG00000027220	pspc1	100	53.788	ENSODEG00000019012	-	99	54.389	Octodon_degus
ENSACLG00000027220	pspc1	100	87.332	ENSONIG00000012010	pspc1	99	87.645	Oreochromis_niloticus
ENSACLG00000027220	pspc1	77	53.431	ENSOANG00000011381	-	82	54.094	Ornithorhynchus_anatinus
ENSACLG00000027220	pspc1	74	56.296	ENSOANG00000009017	-	100	59.606	Ornithorhynchus_anatinus
ENSACLG00000027220	pspc1	87	59.013	ENSOCUG00000006153	PSPC1	99	56.801	Oryctolagus_cuniculus
ENSACLG00000027220	pspc1	100	69.482	ENSORLG00000004232	-	100	69.804	Oryzias_latipes
ENSACLG00000027220	pspc1	100	70.039	ENSORLG00020000578	PSPC1	100	70.000	Oryzias_latipes_hni
ENSACLG00000027220	pspc1	100	69.866	ENSORLG00015017480	pspc1	100	70.196	Oryzias_latipes_hsok
ENSACLG00000027220	pspc1	87	59.101	ENSOGAG00000012643	PSPC1	99	56.881	Otolemur_garnettii
ENSACLG00000027220	pspc1	86	58.836	ENSOARG00000014163	PSPC1	95	61.803	Ovis_aries
ENSACLG00000027220	pspc1	87	61.233	ENSPPAG00000009836	PSPC1	92	72.171	Pan_paniscus
ENSACLG00000027220	pspc1	87	59.101	ENSPPRG00000008833	PSPC1	99	57.274	Panthera_pardus
ENSACLG00000027220	pspc1	74	56.790	ENSPTIG00000016917	PSPC1	84	60.345	Panthera_tigris_altaica
ENSACLG00000027220	pspc1	77	62.935	ENSPTRG00000005677	PSPC1	99	62.935	Pan_troglodytes
ENSACLG00000027220	pspc1	87	58.672	ENSPANG00000001992	PSPC1	92	70.149	Papio_anubis
ENSACLG00000027220	pspc1	100	57.741	ENSPKIG00000003578	pspc1	100	62.738	Paramormyrops_kingsleyae
ENSACLG00000027220	pspc1	99	53.208	ENSPSIG00000005168	PSPC1	90	58.193	Pelodiscus_sinensis
ENSACLG00000027220	pspc1	69	71.471	ENSPMGG00000015135	pspc1	92	71.471	Periophthalmus_magnuspinnatus
ENSACLG00000027220	pspc1	100	53.775	ENSPEMG00000015214	Pspc1	99	56.852	Peromyscus_maniculatus_bairdii
ENSACLG00000027220	pspc1	61	42.230	ENSPMAG00000004618	pspc1	90	42.230	Petromyzon_marinus
ENSACLG00000027220	pspc1	87	58.672	ENSPCIG00000017680	PSPC1	100	57.116	Phascolarctos_cinereus
ENSACLG00000027220	pspc1	99	71.346	ENSPFOG00000003362	pspc1	100	72.727	Poecilia_formosa
ENSACLG00000027220	pspc1	100	71.429	ENSPLAG00000011540	pspc1	100	72.797	Poecilia_latipinna
ENSACLG00000027220	pspc1	100	71.048	ENSPMEG00000008322	pspc1	100	72.414	Poecilia_mexicana
ENSACLG00000027220	pspc1	100	70.667	ENSPREG00000007786	pspc1	100	72.031	Poecilia_reticulata
ENSACLG00000027220	pspc1	87	58.458	ENSPPYG00000005186	PSPC1	99	56.434	Pongo_abelii
ENSACLG00000027220	pspc1	87	60.606	ENSPCOG00000014364	PSPC1	99	57.090	Propithecus_coquereli
ENSACLG00000027220	pspc1	87	59.062	ENSPVAG00000005036	PSPC1	99	57.993	Pteropus_vampyrus
ENSACLG00000027220	pspc1	100	99.598	ENSPNYG00000008893	pspc1	100	99.598	Pundamilia_nyererei
ENSACLG00000027220	pspc1	100	61.194	ENSPNAG00000016511	pspc1	100	63.296	Pygocentrus_nattereri
ENSACLG00000027220	pspc1	100	53.775	ENSRNOG00000020782	Pspc1	99	58.071	Rattus_norvegicus
ENSACLG00000027220	pspc1	87	58.887	ENSRBIG00000036057	PSPC1	97	67.606	Rhinopithecus_bieti
ENSACLG00000027220	pspc1	87	58.887	ENSRROG00000036334	PSPC1	99	62.935	Rhinopithecus_roxellana
ENSACLG00000027220	pspc1	77	57.635	ENSSBOG00000028172	PSPC1	98	64.495	Saimiri_boliviensis_boliviensis
ENSACLG00000027220	pspc1	87	59.101	ENSSHAG00000004696	PSPC1	99	57.249	Sarcophilus_harrisii
ENSACLG00000027220	pspc1	88	64.421	ENSSFOG00015001395	pspc1	99	67.603	Scleropages_formosus
ENSACLG00000027220	pspc1	100	72.795	ENSSMAG00000001761	pspc1	100	73.208	Scophthalmus_maximus
ENSACLG00000027220	pspc1	100	73.162	ENSSDUG00000010651	pspc1	100	75.231	Seriola_dumerili
ENSACLG00000027220	pspc1	100	78.557	ENSSLDG00000004284	pspc1	100	80.361	Seriola_lalandi_dorsalis
ENSACLG00000027220	pspc1	87	60.823	ENSSARG00000000888	PSPC1	99	57.278	Sorex_araneus
ENSACLG00000027220	pspc1	99	54.820	ENSSPUG00000008550	PSPC1	99	56.464	Sphenodon_punctatus
ENSACLG00000027220	pspc1	100	76.217	ENSSPAG00000001921	pspc1	100	76.648	Stegastes_partitus
ENSACLG00000027220	pspc1	87	58.887	ENSSSCG00000009569	PSPC1	99	64.122	Sus_scrofa
ENSACLG00000027220	pspc1	87	58.887	ENSTGUG00000011295	PSPC1	99	59.698	Taeniopygia_guttata
ENSACLG00000027220	pspc1	100	67.823	ENSTRUG00000011335	pspc1	100	68.544	Takifugu_rubripes
ENSACLG00000027220	pspc1	100	64.098	ENSTNIG00000010358	pspc1	100	66.214	Tetraodon_nigroviridis
ENSACLG00000027220	pspc1	87	49.683	ENSTBEG00000002361	PSPC1	95	48.837	Tupaia_belangeri
ENSACLG00000027220	pspc1	100	54.784	ENSTTRG00000003343	PSPC1	99	57.491	Tursiops_truncatus
ENSACLG00000027220	pspc1	69	65.970	ENSUAMG00000012309	PSPC1	92	65.970	Ursus_americanus
ENSACLG00000027220	pspc1	87	58.672	ENSUMAG00000013993	PSPC1	91	71.692	Ursus_maritimus
ENSACLG00000027220	pspc1	74	56.373	ENSVPAG00000010029	PSPC1	100	60.099	Vicugna_pacos
ENSACLG00000027220	pspc1	87	58.887	ENSVVUG00000006414	PSPC1	99	64.000	Vulpes_vulpes
ENSACLG00000027220	pspc1	82	73.399	ENSXCOG00000017438	pspc1	95	74.938	Xiphophorus_couchianus
ENSACLG00000027220	pspc1	82	73.645	ENSXMAG00000007929	pspc1	95	75.186	Xiphophorus_maculatus