EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000027282 (Gene tree)
Gene ID: 113016157
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Minus strand
Length: 43427 bases
Position: chr23:32366635-32410061
Accession: ZDB-GENE-030131-7119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000040501	R3H	PF01424.22	1.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000041453	-	3077	-	ENSACLP00000040501	958 (aa)	-	-

Gene Model

Click here to download ENSACLG00000027282's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000027282's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000027282	r3hdm1	82	59.740	ENSACLG00000019106	r3hdm2	72	58.766

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000027282	r3hdm1	94	62.133	ENSG00000048991	R3HDM1	99	63.492	Homo_sapiens
ENSACLG00000027282	r3hdm1	100	86.083	ENSAPOG00000020850	r3hdm1	96	85.388	Acanthochromis_polyacanthus
ENSACLG00000027282	r3hdm1	94	49.730	ENSAMEG00000014886	R3HDM1	79	50.054	Ailuropoda_melanoleuca
ENSACLG00000027282	r3hdm1	100	81.914	ENSAOCG00000005192	r3hdm1	100	82.201	Amphiprion_ocellaris
ENSACLG00000027282	r3hdm1	100	88.144	ENSAPEG00000016108	r3hdm1	100	88.454	Amphiprion_percula
ENSACLG00000027282	r3hdm1	100	86.203	ENSATEG00000000232	r3hdm1	100	86.515	Anabas_testudineus
ENSACLG00000027282	r3hdm1	95	47.899	ENSAPLG00000015231	R3HDM1	80	48.775	Anas_platyrhynchos
ENSACLG00000027282	r3hdm1	99	44.808	ENSACAG00000001676	R3HDM1	89	45.234	Anolis_carolinensis
ENSACLG00000027282	r3hdm1	94	62.400	ENSANAG00000035334	R3HDM1	87	62.400	Aotus_nancymaae
ENSACLG00000027282	r3hdm1	74	35.626	ENSAMXG00000020587	arpp21	59	37.654	Astyanax_mexicanus
ENSACLG00000027282	r3hdm1	83	71.203	ENSAMXG00000003536	r3hdm1	89	49.664	Astyanax_mexicanus
ENSACLG00000027282	r3hdm1	100	53.575	ENSAMXG00000012861	R3HDM1	89	53.575	Astyanax_mexicanus
ENSACLG00000027282	r3hdm1	99	48.020	ENSBTAG00000013302	R3HDM1	89	46.860	Bos_taurus
ENSACLG00000027282	r3hdm1	94	62.400	ENSCJAG00000011718	R3HDM1	87	62.400	Callithrix_jacchus
ENSACLG00000027282	r3hdm1	94	49.730	ENSCAFG00000005075	R3HDM1	79	50.162	Canis_familiaris
ENSACLG00000027282	r3hdm1	94	49.730	ENSCAFG00020016119	R3HDM1	73	63.309	Canis_lupus_dingo
ENSACLG00000027282	r3hdm1	94	50.379	ENSCHIG00000020851	R3HDM1	79	50.813	Capra_hircus
ENSACLG00000027282	r3hdm1	99	45.109	ENSCPOG00000012784	R3HDM1	100	56.679	Cavia_porcellus
ENSACLG00000027282	r3hdm1	94	62.133	ENSCCAG00000027199	R3HDM1	87	62.133	Cebus_capucinus
ENSACLG00000027282	r3hdm1	94	62.400	ENSCATG00000023642	R3HDM1	87	62.400	Cercocebus_atys
ENSACLG00000027282	r3hdm1	94	47.575	ENSCLAG00000007962	R3HDM1	82	64.029	Chinchilla_lanigera
ENSACLG00000027282	r3hdm1	94	46.605	ENSCSAG00000016356	R3HDM1	80	47.138	Chlorocebus_sabaeus
ENSACLG00000027282	r3hdm1	80	64.122	ENSCHOG00000013638	R3HDM1	64	64.122	Choloepus_hoffmanni
ENSACLG00000027282	r3hdm1	91	49.558	ENSCPBG00000009645	R3HDM1	86	70.144	Chrysemys_picta_bellii
ENSACLG00000027282	r3hdm1	94	61.358	ENSCANG00000034748	R3HDM1	87	60.836	Colobus_angolensis_palliatus
ENSACLG00000027282	r3hdm1	94	47.280	ENSCGRG00001012357	R3hdm1	77	47.390	Cricetulus_griseus_chok1gshd
ENSACLG00000027282	r3hdm1	94	48.701	ENSCGRG00000012080	R3hdm1	100	57.679	Cricetulus_griseus_crigri
ENSACLG00000027282	r3hdm1	100	68.133	ENSCSEG00000008944	r3hdm1	100	69.043	Cynoglossus_semilaevis
ENSACLG00000027282	r3hdm1	100	77.232	ENSCVAG00000007582	r3hdm1	100	77.232	Cyprinodon_variegatus
ENSACLG00000027282	r3hdm1	95	48.184	ENSDNOG00000000771	R3HDM1	79	48.504	Dasypus_novemcinctus
ENSACLG00000027282	r3hdm1	94	45.022	ENSETEG00000013606	R3HDM1	80	45.279	Echinops_telfairi
ENSACLG00000027282	r3hdm1	89	68.269	ENSEASG00005007392	R3HDM1	78	68.269	Equus_asinus_asinus
ENSACLG00000027282	r3hdm1	89	68.269	ENSECAG00000019114	R3HDM1	78	68.269	Equus_caballus
ENSACLG00000027282	r3hdm1	90	54.051	ENSELUG00000014413	r3hdm1	83	54.084	Esox_lucius
ENSACLG00000027282	r3hdm1	95	50.760	ENSELUG00000004909	R3HDM1	81	52.333	Esox_lucius
ENSACLG00000027282	r3hdm1	89	68.269	ENSFCAG00000027113	R3HDM1	88	49.195	Felis_catus
ENSACLG00000027282	r3hdm1	78	49.312	ENSFALG00000013731	R3HDM1	82	44.163	Ficedula_albicollis
ENSACLG00000027282	r3hdm1	97	47.813	ENSFDAG00000016478	R3HDM1	82	65.311	Fukomys_damarensis
ENSACLG00000027282	r3hdm1	100	74.376	ENSFHEG00000018713	r3hdm1	100	74.472	Fundulus_heteroclitus
ENSACLG00000027282	r3hdm1	65	61.752	ENSGMOG00000006042	-	79	55.124	Gadus_morhua
ENSACLG00000027282	r3hdm1	85	64.078	ENSGALG00000012246	R3HDM1	85	64.078	Gallus_gallus
ENSACLG00000027282	r3hdm1	100	78.112	ENSGAFG00000006203	r3hdm1	100	78.734	Gambusia_affinis
ENSACLG00000027282	r3hdm1	95	78.333	ENSGACG00000014925	r3hdm1	92	78.102	Gasterosteus_aculeatus
ENSACLG00000027282	r3hdm1	99	45.898	ENSGAGG00000007840	R3HDM1	76	64.286	Gopherus_agassizii
ENSACLG00000027282	r3hdm1	94	62.133	ENSGGOG00000008156	R3HDM1	87	62.133	Gorilla_gorilla
ENSACLG00000027282	r3hdm1	52	93.284	ENSHBUG00000015737	R3HDM1	96	93.284	Haplochromis_burtoni
ENSACLG00000027282	r3hdm1	94	48.067	ENSHGLG00000015718	R3HDM1	82	64.508	Heterocephalus_glaber_female
ENSACLG00000027282	r3hdm1	99	40.163	ENSHGLG00100015374	-	91	39.652	Heterocephalus_glaber_male
ENSACLG00000027282	r3hdm1	94	47.858	ENSHGLG00100003184	-	82	64.508	Heterocephalus_glaber_male
ENSACLG00000027282	r3hdm1	100	70.332	ENSHCOG00000013366	r3hdm1	100	70.436	Hippocampus_comes
ENSACLG00000027282	r3hdm1	91	62.432	ENSIPUG00000013629	r3hdm1	88	61.622	Ictalurus_punctatus
ENSACLG00000027282	r3hdm1	86	70.625	ENSIPUG00000001676	R3HDM1	100	58.765	Ictalurus_punctatus
ENSACLG00000027282	r3hdm1	94	49.675	ENSSTOG00000007572	R3HDM1	100	57.679	Ictidomys_tridecemlineatus
ENSACLG00000027282	r3hdm1	94	49.483	ENSLACG00000005334	R3HDM1	84	49.431	Latimeria_chalumnae
ENSACLG00000027282	r3hdm1	99	48.693	ENSLOCG00000001641	r3hdm1	89	49.372	Lepisosteus_oculatus
ENSACLG00000027282	r3hdm1	94	48.171	ENSLAFG00000009065	R3HDM1	80	48.330	Loxodonta_africana
ENSACLG00000027282	r3hdm1	89	68.590	ENSMFAG00000030331	R3HDM1	87	62.133	Macaca_fascicularis
ENSACLG00000027282	r3hdm1	94	62.133	ENSMMUG00000009844	R3HDM1	87	62.133	Macaca_mulatta
ENSACLG00000027282	r3hdm1	89	68.590	ENSMNEG00000027793	R3HDM1	87	62.133	Macaca_nemestrina
ENSACLG00000027282	r3hdm1	94	62.133	ENSMLEG00000043189	R3HDM1	87	62.133	Mandrillus_leucophaeus
ENSACLG00000027282	r3hdm1	100	82.766	ENSMAMG00000004532	r3hdm1	100	82.766	Mastacembelus_armatus
ENSACLG00000027282	r3hdm1	100	96.378	ENSMZEG00005003157	r3hdm1	100	96.378	Maylandia_zebra
ENSACLG00000027282	r3hdm1	91	48.955	ENSMGAG00000012461	R3HDM1	79	48.986	Meleagris_gallopavo
ENSACLG00000027282	r3hdm1	94	47.482	ENSMAUG00000010315	R3hdm1	100	57.679	Mesocricetus_auratus
ENSACLG00000027282	r3hdm1	94	61.867	ENSMICG00000005900	-	87	61.867	Microcebus_murinus
ENSACLG00000027282	r3hdm1	94	61.600	ENSMICG00000042655	-	92	61.600	Microcebus_murinus
ENSACLG00000027282	r3hdm1	94	46.341	ENSMODG00000000923	R3HDM1	86	46.247	Monodelphis_domestica
ENSACLG00000027282	r3hdm1	100	81.837	ENSMALG00000009000	r3hdm1	90	81.736	Monopterus_albus
ENSACLG00000027282	r3hdm1	94	47.053	MGP_CAROLIEiJ_G0014543	R3hdm1	100	62.857	Mus_caroli
ENSACLG00000027282	r3hdm1	94	46.949	ENSMUSG00000056211	R3hdm1	100	62.857	Mus_musculus
ENSACLG00000027282	r3hdm1	94	46.536	MGP_PahariEiJ_G0027779	R3hdm1	100	62.857	Mus_pahari
ENSACLG00000027282	r3hdm1	94	46.949	MGP_SPRETEiJ_G0015350	R3hdm1	100	62.857	Mus_spretus
ENSACLG00000027282	r3hdm1	94	50.162	ENSMPUG00000002412	R3HDM1	79	50.270	Mustela_putorius_furo
ENSACLG00000027282	r3hdm1	94	49.568	ENSMLUG00000013824	R3HDM1	79	49.568	Myotis_lucifugus
ENSACLG00000027282	r3hdm1	94	62.133	ENSNLEG00000008622	R3HDM1	87	62.133	Nomascus_leucogenys
ENSACLG00000027282	r3hdm1	88	44.444	ENSMEUG00000011784	R3HDM1	82	45.098	Notamacropus_eugenii
ENSACLG00000027282	r3hdm1	94	46.604	ENSODEG00000008607	R3HDM1	85	62.061	Octodon_degus
ENSACLG00000027282	r3hdm1	95	94.498	ENSONIG00000012017	r3hdm1	85	94.498	Oreochromis_niloticus
ENSACLG00000027282	r3hdm1	94	47.497	ENSOANG00000007987	R3HDM1	79	48.342	Ornithorhynchus_anatinus
ENSACLG00000027282	r3hdm1	94	50.000	ENSOCUG00000017366	R3HDM1	88	49.786	Oryctolagus_cuniculus
ENSACLG00000027282	r3hdm1	100	74.740	ENSORLG00000004297	r3hdm1	100	75.364	Oryzias_latipes
ENSACLG00000027282	r3hdm1	100	74.585	ENSORLG00015017355	r3hdm1	100	73.461	Oryzias_latipes_hsok
ENSACLG00000027282	r3hdm1	52	75.696	ENSOMEG00000003882	-	96	76.998	Oryzias_melastigma
ENSACLG00000027282	r3hdm1	94	49.946	ENSOGAG00000003136	R3HDM1	79	50.270	Otolemur_garnettii
ENSACLG00000027282	r3hdm1	94	50.488	ENSOARG00000010788	R3HDM1	79	50.921	Ovis_aries
ENSACLG00000027282	r3hdm1	94	62.133	ENSPPAG00000027858	R3HDM1	87	62.133	Pan_paniscus
ENSACLG00000027282	r3hdm1	94	61.942	ENSPPRG00000002626	R3HDM1	87	61.942	Panthera_pardus
ENSACLG00000027282	r3hdm1	94	62.205	ENSPTIG00000016581	R3HDM1	87	62.205	Panthera_tigris_altaica
ENSACLG00000027282	r3hdm1	94	62.133	ENSPTRG00000012494	R3HDM1	87	62.133	Pan_troglodytes
ENSACLG00000027282	r3hdm1	94	62.133	ENSPANG00000026448	R3HDM1	87	62.133	Papio_anubis
ENSACLG00000027282	r3hdm1	93	66.292	ENSPKIG00000004328	r3hdm1	83	65.449	Paramormyrops_kingsleyae
ENSACLG00000027282	r3hdm1	51	57.200	ENSPKIG00000011224	R3HDM1	93	56.557	Paramormyrops_kingsleyae
ENSACLG00000027282	r3hdm1	95	48.511	ENSPSIG00000012915	R3HDM1	80	48.669	Pelodiscus_sinensis
ENSACLG00000027282	r3hdm1	94	47.314	ENSPEMG00000015187	R3hdm1	100	57.679	Peromyscus_maniculatus_bairdii
ENSACLG00000027282	r3hdm1	94	38.968	ENSPMAG00000003369	-	90	39.662	Petromyzon_marinus
ENSACLG00000027282	r3hdm1	89	66.987	ENSPCIG00000002491	R3HDM1	88	46.206	Phascolarctos_cinereus
ENSACLG00000027282	r3hdm1	100	73.048	ENSPFOG00000015036	r3hdm1	100	73.048	Poecilia_formosa
ENSACLG00000027282	r3hdm1	100	78.888	ENSPLAG00000018042	r3hdm1	100	78.822	Poecilia_latipinna
ENSACLG00000027282	r3hdm1	100	78.498	ENSPMEG00000023947	r3hdm1	100	78.431	Poecilia_mexicana
ENSACLG00000027282	r3hdm1	100	78.535	ENSPREG00000007902	r3hdm1	100	79.089	Poecilia_reticulata
ENSACLG00000027282	r3hdm1	94	47.609	ENSPPYG00000012815	R3HDM1	79	49.030	Pongo_abelii
ENSACLG00000027282	r3hdm1	81	69.432	ENSPCAG00000006208	R3HDM1	68	69.130	Procavia_capensis
ENSACLG00000027282	r3hdm1	94	60.108	ENSPCOG00000012698	R3HDM1	87	60.108	Propithecus_coquereli
ENSACLG00000027282	r3hdm1	94	43.337	ENSPVAG00000006098	R3HDM1	79	43.662	Pteropus_vampyrus
ENSACLG00000027282	r3hdm1	85	72.222	ENSPNAG00000005436	R3HDM1	87	71.242	Pygocentrus_nattereri
ENSACLG00000027282	r3hdm1	86	71.203	ENSPNAG00000013952	r3hdm1	84	51.429	Pygocentrus_nattereri
ENSACLG00000027282	r3hdm1	94	46.639	ENSRNOG00000004099	R3hdm1	80	47.126	Rattus_norvegicus
ENSACLG00000027282	r3hdm1	85	71.942	ENSRBIG00000033317	R3HDM1	86	71.942	Rhinopithecus_bieti
ENSACLG00000027282	r3hdm1	94	62.133	ENSRROG00000034534	R3HDM1	87	62.133	Rhinopithecus_roxellana
ENSACLG00000027282	r3hdm1	94	62.133	ENSSBOG00000020389	R3HDM1	87	62.133	Saimiri_boliviensis_boliviensis
ENSACLG00000027282	r3hdm1	99	47.984	ENSSHAG00000016999	R3HDM1	88	48.185	Sarcophilus_harrisii
ENSACLG00000027282	r3hdm1	91	61.275	ENSSFOG00015014134	r3hdm1	81	60.539	Scleropages_formosus
ENSACLG00000027282	r3hdm1	100	47.353	ENSSFOG00015019851	-	91	58.661	Scleropages_formosus
ENSACLG00000027282	r3hdm1	100	82.096	ENSSMAG00000001669	r3hdm1	90	82.096	Scophthalmus_maximus
ENSACLG00000027282	r3hdm1	100	87.410	ENSSDUG00000010749	r3hdm1	100	87.922	Seriola_dumerili
ENSACLG00000027282	r3hdm1	100	84.462	ENSSLDG00000004499	r3hdm1	90	85.458	Seriola_lalandi_dorsalis
ENSACLG00000027282	r3hdm1	99	45.333	ENSSPUG00000004167	R3HDM1	88	46.577	Sphenodon_punctatus
ENSACLG00000027282	r3hdm1	100	89.139	ENSSPAG00000004648	r3hdm1	100	89.139	Stegastes_partitus
ENSACLG00000027282	r3hdm1	94	58.871	ENSSSCG00000015692	R3HDM1	87	58.871	Sus_scrofa
ENSACLG00000027282	r3hdm1	91	49.444	ENSTGUG00000011750	R3HDM1	80	48.617	Taeniopygia_guttata
ENSACLG00000027282	r3hdm1	100	76.453	ENSTRUG00000011654	r3hdm1	99	76.453	Takifugu_rubripes
ENSACLG00000027282	r3hdm1	97	69.207	ENSTNIG00000010362	r3hdm1	98	69.309	Tetraodon_nigroviridis
ENSACLG00000027282	r3hdm1	94	48.317	ENSTTRG00000003935	R3HDM1	79	48.478	Tursiops_truncatus
ENSACLG00000027282	r3hdm1	73	62.667	ENSUAMG00000024806	R3HDM1	93	61.867	Ursus_americanus
ENSACLG00000027282	r3hdm1	94	61.867	ENSUMAG00000005552	R3HDM1	87	61.867	Ursus_maritimus
ENSACLG00000027282	r3hdm1	87	49.651	ENSVPAG00000007333	R3HDM1	73	49.413	Vicugna_pacos
ENSACLG00000027282	r3hdm1	94	61.867	ENSVVUG00000006457	R3HDM1	88	61.867	Vulpes_vulpes
ENSACLG00000027282	r3hdm1	94	46.336	ENSXETG00000019330	r3hdm1	87	46.919	Xenopus_tropicalis
ENSACLG00000027282	r3hdm1	78	74.702	ENSXCOG00000017448	r3hdm1	93	75.497	Xiphophorus_couchianus
ENSACLG00000027282	r3hdm1	100	77.859	ENSXMAG00000007885	r3hdm1	97	78.482	Xiphophorus_maculatus