EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSACLG00000027919 (Gene tree)
Gene ID: 113020821
Gene Symbol: ern1
Alias: sb:eu1005|zgc:109932
Full Name: endoplasmic reticulum to nucleus signaling 1
Gene Type: protein_coding
Species: Astatotilapia_calliptera
Status: putative
Strand: Plus strand
Length: 23591 bases
Position: chr4:15991700-16015290
Accession: 113020821
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSACLP00000041484	Ribonuc_2-5A	PF06479.12	1e-40	1	1
ENSACLP00000041482	Ribonuc_2-5A	PF06479.12	1.2e-40	1	1
ENSACLP00000041480	Ribonuc_2-5A	PF06479.12	1.2e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSACLT00000042463	-	3935	-	ENSACLP00000041484	998 (aa)	-	-
ENSACLT00000042459	-	3267	-	ENSACLP00000041480	1088 (aa)	XP_026020851	UPI00032A008D
ENSACLT00000042461	-	3234	-	ENSACLP00000041482	1077 (aa)	-	-

Gene Model

Click here to download ENSACLG00000027919's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSACLG00000027919's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSACLG00000027919	ern1	87	56.133	ENSACLG00000000966	ern2	98	55.228

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSACLG00000027919	ern1	97	91.879	ENSAPOG00000009999	ern1	99	90.507	Acanthochromis_polyacanthus
ENSACLG00000027919	ern1	100	94.761	ENSACIG00000021716	ern1	100	94.761	Amphilophus_citrinellus
ENSACLG00000027919	ern1	99	91.060	ENSAOCG00000012309	ern1	99	91.060	Amphiprion_ocellaris
ENSACLG00000027919	ern1	99	90.599	ENSAPEG00000011263	ern1	98	94.595	Amphiprion_percula
ENSACLG00000027919	ern1	100	89.061	ENSATEG00000024468	ern1	100	89.061	Anabas_testudineus
ENSACLG00000027919	ern1	92	82.786	ENSAMXG00000000944	ern1	96	82.786	Astyanax_mexicanus
ENSACLG00000027919	ern1	94	88.954	ENSCSEG00000014500	ern1	99	89.247	Cynoglossus_semilaevis
ENSACLG00000027919	ern1	97	86.433	ENSCVAG00000002988	ern1	99	87.199	Cyprinodon_variegatus
ENSACLG00000027919	ern1	89	82.627	ENSDARG00000013997	ern1	100	82.627	Danio_rerio
ENSACLG00000027919	ern1	89	82.635	ENSELUG00000005957	ern1	93	82.635	Esox_lucius
ENSACLG00000027919	ern1	95	87.488	ENSFHEG00000005578	ern1	97	87.488	Fundulus_heteroclitus
ENSACLG00000027919	ern1	87	87.979	ENSGMOG00000011232	ern1	100	87.979	Gadus_morhua
ENSACLG00000027919	ern1	98	86.679	ENSGAFG00000020231	ern1	99	86.679	Gambusia_affinis
ENSACLG00000027919	ern1	87	91.915	ENSGACG00000011700	ern1	99	90.690	Gasterosteus_aculeatus
ENSACLG00000027919	ern1	100	99.536	ENSHBUG00000012581	ern1	100	99.536	Haplochromis_burtoni
ENSACLG00000027919	ern1	99	84.123	ENSHCOG00000016199	ern1	99	84.476	Hippocampus_comes
ENSACLG00000027919	ern1	89	84.135	ENSIPUG00000011083	ern1	93	84.135	Ictalurus_punctatus
ENSACLG00000027919	ern1	100	85.780	ENSKMAG00000019499	ern1	100	85.780	Kryptolebias_marmoratus
ENSACLG00000027919	ern1	99	85.847	ENSLBEG00000025907	ern1	100	85.688	Labrus_bergylta
ENSACLG00000027919	ern1	100	88.483	ENSMAMG00000023439	ern1	100	88.483	Mastacembelus_armatus
ENSACLG00000027919	ern1	100	100.000	ENSMZEG00005003221	ern1	100	100.000	Maylandia_zebra
ENSACLG00000027919	ern1	90	91.385	ENSMMOG00000007650	ern1	97	91.385	Mola_mola
ENSACLG00000027919	ern1	99	86.667	ENSMALG00000017775	ern1	98	86.667	Monopterus_albus
ENSACLG00000027919	ern1	100	98.050	ENSNBRG00000002179	ern1	100	98.050	Neolamprologus_brichardi
ENSACLG00000027919	ern1	89	96.038	ENSONIG00000017169	ern1	98	97.246	Oreochromis_niloticus
ENSACLG00000027919	ern1	98	86.207	ENSORLG00000008940	ern1	99	86.207	Oryzias_latipes
ENSACLG00000027919	ern1	99	86.216	ENSORLG00020018387	ern1	99	86.216	Oryzias_latipes_hni
ENSACLG00000027919	ern1	99	86.124	ENSORLG00015007946	ern1	99	86.124	Oryzias_latipes_hsok
ENSACLG00000027919	ern1	99	86.124	ENSOMEG00000011741	ern1	99	86.124	Oryzias_melastigma
ENSACLG00000027919	ern1	89	82.389	ENSPKIG00000005593	ern1	98	82.389	Paramormyrops_kingsleyae
ENSACLG00000027919	ern1	100	83.868	ENSPMGG00000020442	ern1	98	87.623	Periophthalmus_magnuspinnatus
ENSACLG00000027919	ern1	96	88.506	ENSPFOG00000007378	ern1	97	88.506	Poecilia_formosa
ENSACLG00000027919	ern1	96	88.506	ENSPLAG00000014780	ern1	97	88.506	Poecilia_latipinna
ENSACLG00000027919	ern1	96	88.602	ENSPMEG00000016324	ern1	97	88.602	Poecilia_mexicana
ENSACLG00000027919	ern1	96	88.027	ENSPREG00000006286	ern1	97	88.027	Poecilia_reticulata
ENSACLG00000027919	ern1	100	99.449	ENSPNYG00000017929	ern1	100	99.449	Pundamilia_nyererei
ENSACLG00000027919	ern1	97	79.755	ENSPNAG00000029447	ern1	99	79.944	Pygocentrus_nattereri
ENSACLG00000027919	ern1	100	87.511	ENSSMAG00000015042	ern1	100	87.511	Scophthalmus_maximus
ENSACLG00000027919	ern1	100	90.876	ENSSDUG00000009098	ern1	100	90.876	Seriola_dumerili
ENSACLG00000027919	ern1	100	90.420	ENSSLDG00000023254	ern1	100	90.420	Seriola_lalandi_dorsalis
ENSACLG00000027919	ern1	99	90.198	ENSSPAG00000017539	ern1	99	90.198	Stegastes_partitus
ENSACLG00000027919	ern1	94	87.980	ENSTRUG00000001041	ern1	97	87.980	Takifugu_rubripes
ENSACLG00000027919	ern1	87	92.102	ENSTNIG00000017990	ern1	99	91.186	Tetraodon_nigroviridis
ENSACLG00000027919	ern1	91	91.066	ENSXCOG00000010330	ern1	97	91.066	Xiphophorus_couchianus
ENSACLG00000027919	ern1	99	85.727	ENSXMAG00000001310	ern1	96	88.547	Xiphophorus_maculatus