EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMEG00000002357 (Gene tree)
Gene ID: 100476578
Gene Symbol: SMG7
Alias: C1orf16|EST1C|KIAA0250|SGA56M|SMG-7
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Plus strand
Length: 36721 bases
Position: chrGL193078.1:621690-658410
Accession: 16792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000002516	EST1	PF10374.9	5e-25	1	1
ENSAMEP00000002524	EST1	PF10374.9	5.2e-25	1	1
ENSAMEP00000002516	EST1_DNA_bind	PF10373.9	8.2e-56	1	1
ENSAMEP00000002524	EST1_DNA_bind	PF10373.9	8.3e-56	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000002625	SMG7-201	3417	-	ENSAMEP00000002516	1138 (aa)	-	G1L6K1
ENSAMET00000002634	SMG7-202	3432	-	ENSAMEP00000002524	1144 (aa)	-	G1L6K9

Gene Model

Click here to download ENSAMEG00000002357's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000002357's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000002357	SMG7	100	96.856	ENSG00000116698	SMG7	100	96.856	Homo_sapiens
ENSAMEG00000002357	SMG7	89	74.251	ENSAPOG00000009611	smg7	95	74.887	Acanthochromis_polyacanthus
ENSAMEG00000002357	SMG7	100	62.027	ENSACIG00000015152	smg7	100	65.152	Amphilophus_citrinellus
ENSAMEG00000002357	SMG7	100	64.552	ENSAOCG00000013538	smg7	99	66.010	Amphiprion_ocellaris
ENSAMEG00000002357	SMG7	100	64.527	ENSAPEG00000007851	smg7	99	65.983	Amphiprion_percula
ENSAMEG00000002357	SMG7	99	65.017	ENSATEG00000006931	smg7	99	65.158	Anabas_testudineus
ENSAMEG00000002357	SMG7	99	88.840	ENSAPLG00000015811	SMG7	99	88.752	Anas_platyrhynchos
ENSAMEG00000002357	SMG7	100	87.446	ENSACAG00000014989	SMG7	96	87.879	Anolis_carolinensis
ENSAMEG00000002357	SMG7	100	96.681	ENSANAG00000028114	SMG7	99	96.723	Aotus_nancymaae
ENSAMEG00000002357	SMG7	100	65.110	ENSACLG00000022079	smg7	99	65.517	Astatotilapia_calliptera
ENSAMEG00000002357	SMG7	100	67.498	ENSAMXG00000020809	smg7	99	68.407	Astyanax_mexicanus
ENSAMEG00000002357	SMG7	99	96.280	ENSBTAG00000008003	SMG7	99	96.280	Bos_taurus
ENSAMEG00000002357	SMG7	100	96.594	ENSCJAG00000005135	SMG7	99	96.634	Callithrix_jacchus
ENSAMEG00000002357	SMG7	100	94.668	ENSCAFG00000013276	SMG7	94	94.668	Canis_familiaris
ENSAMEG00000002357	SMG7	100	98.601	ENSCAFG00020015475	SMG7	100	98.327	Canis_lupus_dingo
ENSAMEG00000002357	SMG7	100	92.838	ENSCHIG00000018192	SMG7	96	92.838	Capra_hircus
ENSAMEG00000002357	SMG7	100	95.371	ENSTSYG00000002667	SMG7	100	95.459	Carlito_syrichta
ENSAMEG00000002357	SMG7	100	93.182	ENSCPOG00000008906	SMG7	97	93.182	Cavia_porcellus
ENSAMEG00000002357	SMG7	100	96.943	ENSCCAG00000028596	SMG7	100	96.943	Cebus_capucinus
ENSAMEG00000002357	SMG7	100	97.031	ENSCATG00000011063	SMG7	100	97.031	Cercocebus_atys
ENSAMEG00000002357	SMG7	99	95.306	ENSCLAG00000010751	SMG7	99	95.394	Chinchilla_lanigera
ENSAMEG00000002357	SMG7	100	93.188	ENSCSAG00000012654	SMG7	94	93.188	Chlorocebus_sabaeus
ENSAMEG00000002357	SMG7	95	84.081	ENSCHOG00000010522	SMG7	93	84.538	Choloepus_hoffmanni
ENSAMEG00000002357	SMG7	100	90.775	ENSCPBG00000015724	SMG7	99	90.644	Chrysemys_picta_bellii
ENSAMEG00000002357	SMG7	100	96.943	ENSCANG00000015680	SMG7	100	96.943	Colobus_angolensis_palliatus
ENSAMEG00000002357	SMG7	99	94.420	ENSCGRG00001013705	Smg7	99	94.243	Cricetulus_griseus_chok1gshd
ENSAMEG00000002357	SMG7	99	94.499	ENSCGRG00000018401	Smg7	100	94.321	Cricetulus_griseus_crigri
ENSAMEG00000002357	SMG7	97	68.000	ENSCVAG00000011842	smg7	98	67.500	Cyprinodon_variegatus
ENSAMEG00000002357	SMG7	100	66.496	ENSDARG00000060767	smg7	99	65.954	Danio_rerio
ENSAMEG00000002357	SMG7	100	91.441	ENSDORG00000007331	Smg7	96	91.528	Dipodomys_ordii
ENSAMEG00000002357	SMG7	97	90.794	ENSETEG00000002654	SMG7	96	90.884	Echinops_telfairi
ENSAMEG00000002357	SMG7	100	94.061	ENSEASG00005006524	SMG7	96	94.061	Equus_asinus_asinus
ENSAMEG00000002357	SMG7	100	94.148	ENSECAG00000004313	SMG7	99	94.055	Equus_caballus
ENSAMEG00000002357	SMG7	97	93.237	ENSEEUG00000002024	SMG7	91	93.237	Erinaceus_europaeus
ENSAMEG00000002357	SMG7	100	65.734	ENSELUG00000010293	smg7	99	66.016	Esox_lucius
ENSAMEG00000002357	SMG7	100	94.318	ENSFCAG00000010900	SMG7	99	94.052	Felis_catus
ENSAMEG00000002357	SMG7	100	85.764	ENSFALG00000003047	SMG7	98	85.764	Ficedula_albicollis
ENSAMEG00000002357	SMG7	100	92.576	ENSFDAG00000012121	SMG7	97	92.576	Fukomys_damarensis
ENSAMEG00000002357	SMG7	99	63.746	ENSFHEG00000011073	smg7	99	64.003	Fundulus_heteroclitus
ENSAMEG00000002357	SMG7	89	74.338	ENSGMOG00000004916	smg7	85	74.338	Gadus_morhua
ENSAMEG00000002357	SMG7	99	88.908	ENSGALG00000004667	SMG7	99	88.820	Gallus_gallus
ENSAMEG00000002357	SMG7	99	63.879	ENSGAFG00000019000	smg7	99	64.131	Gambusia_affinis
ENSAMEG00000002357	SMG7	97	62.665	ENSGACG00000001634	smg7	99	62.764	Gasterosteus_aculeatus
ENSAMEG00000002357	SMG7	100	96.856	ENSGGOG00000002342	SMG7	100	96.856	Gorilla_gorilla
ENSAMEG00000002357	SMG7	100	65.110	ENSHBUG00000003726	smg7	94	71.574	Haplochromis_burtoni
ENSAMEG00000002357	SMG7	99	96.368	ENSHGLG00000009353	SMG7	99	96.368	Heterocephalus_glaber_female
ENSAMEG00000002357	SMG7	100	84.454	ENSHGLG00100004878	-	96	84.541	Heterocephalus_glaber_male
ENSAMEG00000002357	SMG7	99	96.457	ENSHGLG00100009637	-	99	96.457	Heterocephalus_glaber_male
ENSAMEG00000002357	SMG7	100	67.586	ENSIPUG00000016997	smg7	99	68.531	Ictalurus_punctatus
ENSAMEG00000002357	SMG7	100	92.838	ENSSTOG00000000401	SMG7	99	92.914	Ictidomys_tridecemlineatus
ENSAMEG00000002357	SMG7	100	90.393	ENSJJAG00000012351	Smg7	96	90.480	Jaculus_jaculus
ENSAMEG00000002357	SMG7	97	61.316	ENSKMAG00000004900	smg7	100	61.984	Kryptolebias_marmoratus
ENSAMEG00000002357	SMG7	99	65.833	ENSLBEG00000002983	smg7	99	65.833	Labrus_bergylta
ENSAMEG00000002357	SMG7	52	63.000	ENSLBEG00000005220	-	75	63.000	Labrus_bergylta
ENSAMEG00000002357	SMG7	100	75.365	ENSLACG00000000972	SMG7	99	76.153	Latimeria_chalumnae
ENSAMEG00000002357	SMG7	100	68.557	ENSLOCG00000002010	smg7	99	66.196	Lepisosteus_oculatus
ENSAMEG00000002357	SMG7	100	92.926	ENSLAFG00000008186	SMG7	96	92.926	Loxodonta_africana
ENSAMEG00000002357	SMG7	100	97.118	ENSMFAG00000031653	SMG7	100	97.118	Macaca_fascicularis
ENSAMEG00000002357	SMG7	100	97.031	ENSMMUG00000018458	SMG7	99	96.619	Macaca_mulatta
ENSAMEG00000002357	SMG7	100	97.031	ENSMNEG00000034798	SMG7	100	97.031	Macaca_nemestrina
ENSAMEG00000002357	SMG7	100	97.031	ENSMLEG00000037170	SMG7	100	97.031	Mandrillus_leucophaeus
ENSAMEG00000002357	SMG7	88	63.480	ENSMAMG00000018733	smg7	85	64.460	Mastacembelus_armatus
ENSAMEG00000002357	SMG7	100	64.975	ENSMZEG00005015247	smg7	99	65.517	Maylandia_zebra
ENSAMEG00000002357	SMG7	97	88.510	ENSMGAG00000001561	SMG7	98	88.420	Meleagris_gallopavo
ENSAMEG00000002357	SMG7	99	94.686	ENSMAUG00000019484	Smg7	99	94.508	Mesocricetus_auratus
ENSAMEG00000002357	SMG7	99	97.252	ENSMICG00000007145	SMG7	99	97.252	Microcebus_murinus
ENSAMEG00000002357	SMG7	99	94.154	ENSMOCG00000020748	Smg7	99	94.243	Microtus_ochrogaster
ENSAMEG00000002357	SMG7	99	63.833	ENSMMOG00000001524	smg7	99	64.205	Mola_mola
ENSAMEG00000002357	SMG7	91	92.610	ENSMODG00000007139	SMG7	99	92.706	Monodelphis_domestica
ENSAMEG00000002357	SMG7	97	68.657	ENSMALG00000000061	smg7	90	68.657	Monopterus_albus
ENSAMEG00000002357	SMG7	99	94.597	MGP_CAROLIEiJ_G0014704	Smg7	99	94.066	Mus_caroli
ENSAMEG00000002357	SMG7	99	94.508	ENSMUSG00000042772	Smg7	99	94.331	Mus_musculus
ENSAMEG00000002357	SMG7	99	93.888	MGP_PahariEiJ_G0027940	Smg7	99	93.977	Mus_pahari
ENSAMEG00000002357	SMG7	99	94.597	MGP_SPRETEiJ_G0015511	Smg7	99	94.420	Mus_spretus
ENSAMEG00000002357	SMG7	100	94.843	ENSMPUG00000011732	SMG7	95	94.843	Mustela_putorius_furo
ENSAMEG00000002357	SMG7	100	93.188	ENSMLUG00000015417	SMG7	96	93.188	Myotis_lucifugus
ENSAMEG00000002357	SMG7	99	95.745	ENSNGAG00000009836	Smg7	99	95.745	Nannospalax_galili
ENSAMEG00000002357	SMG7	98	61.646	ENSNBRG00000024343	smg7	96	69.524	Neolamprologus_brichardi
ENSAMEG00000002357	SMG7	100	97.118	ENSNLEG00000018018	SMG7	100	97.118	Nomascus_leucogenys
ENSAMEG00000002357	SMG7	71	91.463	ENSMEUG00000004681	SMG7	73	91.463	Notamacropus_eugenii
ENSAMEG00000002357	SMG7	97	81.391	ENSOPRG00000013942	SMG7	96	78.684	Ochotona_princeps
ENSAMEG00000002357	SMG7	99	95.217	ENSODEG00000010390	SMG7	99	95.306	Octodon_degus
ENSAMEG00000002357	SMG7	99	65.523	ENSONIG00000000277	smg7	99	65.120	Oreochromis_niloticus
ENSAMEG00000002357	SMG7	100	86.870	ENSOANG00000000994	SMG7	98	86.957	Ornithorhynchus_anatinus
ENSAMEG00000002357	SMG7	100	86.114	ENSOCUG00000005887	SMG7	90	86.288	Oryctolagus_cuniculus
ENSAMEG00000002357	SMG7	100	63.099	ENSORLG00000007314	smg7	99	64.007	Oryzias_latipes
ENSAMEG00000002357	SMG7	100	63.271	ENSORLG00020015779	smg7	99	64.354	Oryzias_latipes_hni
ENSAMEG00000002357	SMG7	100	62.884	ENSORLG00015012289	smg7	99	63.959	Oryzias_latipes_hsok
ENSAMEG00000002357	SMG7	100	62.969	ENSOMEG00000002328	smg7	99	62.489	Oryzias_melastigma
ENSAMEG00000002357	SMG7	97	92.502	ENSOGAG00000003107	SMG7	90	92.051	Otolemur_garnettii
ENSAMEG00000002357	SMG7	100	92.664	ENSOARG00000001352	SMG7	100	92.583	Ovis_aries
ENSAMEG00000002357	SMG7	100	97.031	ENSPPAG00000031619	SMG7	100	97.031	Pan_paniscus
ENSAMEG00000002357	SMG7	99	98.138	ENSPPRG00000011222	SMG7	99	98.138	Panthera_pardus
ENSAMEG00000002357	SMG7	100	98.164	ENSPTIG00000007242	SMG7	100	98.164	Panthera_tigris_altaica
ENSAMEG00000002357	SMG7	100	97.031	ENSPTRG00000001764	SMG7	100	97.031	Pan_troglodytes
ENSAMEG00000002357	SMG7	99	97.077	ENSPANG00000004520	SMG7	99	97.077	Papio_anubis
ENSAMEG00000002357	SMG7	100	65.371	ENSPKIG00000007242	smg7	96	69.000	Paramormyrops_kingsleyae
ENSAMEG00000002357	SMG7	98	89.375	ENSPSIG00000012201	SMG7	100	88.750	Pelodiscus_sinensis
ENSAMEG00000002357	SMG7	59	57.500	ENSPMGG00000021833	smg7	89	58.000	Periophthalmus_magnuspinnatus
ENSAMEG00000002357	SMG7	100	90.917	ENSPEMG00000011315	Smg7	100	91.416	Peromyscus_maniculatus_bairdii
ENSAMEG00000002357	SMG7	100	92.059	ENSPCIG00000003786	SMG7	99	91.947	Phascolarctos_cinereus
ENSAMEG00000002357	SMG7	100	62.606	ENSPFOG00000019219	smg7	99	60.927	Poecilia_formosa
ENSAMEG00000002357	SMG7	99	63.731	ENSPLAG00000001446	smg7	99	63.644	Poecilia_latipinna
ENSAMEG00000002357	SMG7	96	62.979	ENSPMEG00000005218	smg7	99	62.890	Poecilia_mexicana
ENSAMEG00000002357	SMG7	88	60.568	ENSPREG00000019039	smg7	91	61.867	Poecilia_reticulata
ENSAMEG00000002357	SMG7	99	97.166	ENSPPYG00000000427	SMG7	99	97.166	Pongo_abelii
ENSAMEG00000002357	SMG7	91	87.810	ENSPCAG00000008360	SMG7	88	88.362	Procavia_capensis
ENSAMEG00000002357	SMG7	100	93.531	ENSPCOG00000011996	SMG7	99	93.528	Propithecus_coquereli
ENSAMEG00000002357	SMG7	92	87.749	ENSPVAG00000000851	SMG7	86	87.559	Pteropus_vampyrus
ENSAMEG00000002357	SMG7	100	64.966	ENSPNYG00000007643	smg7	99	65.285	Pundamilia_nyererei
ENSAMEG00000002357	SMG7	100	67.038	ENSPNAG00000011374	smg7	99	67.448	Pygocentrus_nattereri
ENSAMEG00000002357	SMG7	100	94.241	ENSRNOG00000027962	Smg7	100	94.328	Rattus_norvegicus
ENSAMEG00000002357	SMG7	100	96.943	ENSRBIG00000036316	SMG7	100	96.943	Rhinopithecus_bieti
ENSAMEG00000002357	SMG7	100	96.943	ENSRROG00000035719	SMG7	100	96.943	Rhinopithecus_roxellana
ENSAMEG00000002357	SMG7	100	96.856	ENSSBOG00000023454	SMG7	100	96.856	Saimiri_boliviensis_boliviensis
ENSAMEG00000002357	SMG7	99	92.199	ENSSHAG00000013147	SMG7	99	91.940	Sarcophilus_harrisii
ENSAMEG00000002357	SMG7	92	76.842	ENSSFOG00015017252	smg7	96	76.842	Scleropages_formosus
ENSAMEG00000002357	SMG7	100	65.329	ENSSMAG00000006067	smg7	99	65.946	Scophthalmus_maximus
ENSAMEG00000002357	SMG7	99	64.571	ENSSDUG00000017543	smg7	99	65.056	Seriola_dumerili
ENSAMEG00000002357	SMG7	99	89.134	ENSSPUG00000002064	SMG7	99	89.046	Sphenodon_punctatus
ENSAMEG00000002357	SMG7	98	67.372	ENSSPAG00000008733	smg7	98	66.873	Stegastes_partitus
ENSAMEG00000002357	SMG7	100	93.886	ENSSSCG00000015558	SMG7	99	93.800	Sus_scrofa
ENSAMEG00000002357	SMG7	99	89.163	ENSTGUG00000003928	SMG7	100	89.163	Taeniopygia_guttata
ENSAMEG00000002357	SMG7	100	60.884	ENSTNIG00000002802	smg7	99	58.511	Tetraodon_nigroviridis
ENSAMEG00000002357	SMG7	78	95.763	ENSTBEG00000003220	SMG7	72	95.763	Tupaia_belangeri
ENSAMEG00000002357	SMG7	97	93.412	ENSTTRG00000014778	SMG7	91	93.412	Tursiops_truncatus
ENSAMEG00000002357	SMG7	96	95.338	ENSUAMG00000017473	SMG7	100	95.338	Ursus_americanus
ENSAMEG00000002357	SMG7	100	95.542	ENSUMAG00000016389	SMG7	100	95.542	Ursus_maritimus
ENSAMEG00000002357	SMG7	100	94.843	ENSVVUG00000008976	SMG7	96	97.970	Vulpes_vulpes
ENSAMEG00000002357	SMG7	99	71.156	ENSXETG00000012528	smg7	99	71.117	Xenopus_tropicalis
ENSAMEG00000002357	SMG7	99	64.114	ENSXMAG00000007123	smg7	99	64.200	Xiphophorus_maculatus