EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMEG00000004586 (Gene tree)
Gene ID: 100482868
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Plus strand
Length: 93099 bases
Position: chrGL193226.1:234608-327706
Accession: 100482868
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000004853	Upf2	PF04050.14	4.6e-33	1	1
ENSAMEP00000004853	MIF4G	PF02854.19	3.3e-76	1	3
ENSAMEP00000004853	MIF4G	PF02854.19	3.3e-76	2	3
ENSAMEP00000004853	MIF4G	PF02854.19	3.3e-76	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000005049	UPF2-201	3813	XM_002925150	ENSAMEP00000004853	1271 (aa)	XP_002925196	G1LD72

Gene Model

Click here to download ENSAMEG00000004586's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml03013	RNA transport	KEGG
aml03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000004586's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000004586	UPF2	100	97.720	ENSG00000151461	UPF2	100	97.720	Homo_sapiens
ENSAMEG00000004586	UPF2	99	79.013	ENSAPOG00000015837	UPF2	100	78.857	Acanthochromis_polyacanthus
ENSAMEG00000004586	UPF2	99	82.969	ENSACIG00000018078	UPF2	100	82.891	Amphilophus_citrinellus
ENSAMEG00000004586	UPF2	100	83.073	ENSAOCG00000016766	UPF2	100	83.151	Amphiprion_ocellaris
ENSAMEG00000004586	UPF2	100	83.151	ENSAPEG00000019084	UPF2	100	83.229	Amphiprion_percula
ENSAMEG00000004586	UPF2	100	82.893	ENSATEG00000021677	UPF2	99	82.944	Anabas_testudineus
ENSAMEG00000004586	UPF2	100	87.186	ENSAPLG00000010287	UPF2	90	91.573	Anas_platyrhynchos
ENSAMEG00000004586	UPF2	100	92.526	ENSACAG00000009259	UPF2	100	92.526	Anolis_carolinensis
ENSAMEG00000004586	UPF2	99	87.814	ENSANAG00000028451	UPF2	99	86.557	Aotus_nancymaae
ENSAMEG00000004586	UPF2	100	81.279	ENSACLG00000012696	UPF2	100	83.073	Astatotilapia_calliptera
ENSAMEG00000004586	UPF2	99	83.490	ENSAMXG00000013700	UPF2	99	83.881	Astyanax_mexicanus
ENSAMEG00000004586	UPF2	100	98.977	ENSBTAG00000000288	UPF2	100	98.977	Bos_taurus
ENSAMEG00000004586	UPF2	100	97.877	ENSCJAG00000020685	UPF2	100	97.877	Callithrix_jacchus
ENSAMEG00000004586	UPF2	100	99.528	ENSCAFG00000004839	UPF2	100	99.528	Canis_familiaris
ENSAMEG00000004586	UPF2	99	97.163	ENSCAFG00020005882	UPF2	98	99.407	Canis_lupus_dingo
ENSAMEG00000004586	UPF2	100	99.056	ENSCHIG00000020359	UPF2	100	99.056	Capra_hircus
ENSAMEG00000004586	UPF2	100	97.482	ENSTSYG00000000935	UPF2	100	97.482	Carlito_syrichta
ENSAMEG00000004586	UPF2	91	87.608	ENSCAPG00000016658	UPF2	94	87.144	Cavia_aperea
ENSAMEG00000004586	UPF2	99	96.193	ENSCPOG00000008809	UPF2	99	96.193	Cavia_porcellus
ENSAMEG00000004586	UPF2	100	91.424	ENSCCAG00000035991	UPF2	100	91.424	Cebus_capucinus
ENSAMEG00000004586	UPF2	100	97.877	ENSCATG00000032679	UPF2	100	97.877	Cercocebus_atys
ENSAMEG00000004586	UPF2	100	97.876	ENSCLAG00000011434	UPF2	100	97.876	Chinchilla_lanigera
ENSAMEG00000004586	UPF2	100	97.956	ENSCSAG00000013372	UPF2	100	97.956	Chlorocebus_sabaeus
ENSAMEG00000004586	UPF2	87	98.884	ENSCHOG00000000422	UPF2	89	98.884	Choloepus_hoffmanni
ENSAMEG00000004586	UPF2	99	92.277	ENSCPBG00000027823	UPF2	100	93.144	Chrysemys_picta_bellii
ENSAMEG00000004586	UPF2	79	48.865	ENSCSAVG00000007772	-	79	50.128	Ciona_savignyi
ENSAMEG00000004586	UPF2	99	91.719	ENSCANG00000040396	UPF2	100	92.368	Colobus_angolensis_palliatus
ENSAMEG00000004586	UPF2	100	98.190	ENSCGRG00001019347	Upf2	100	98.190	Cricetulus_griseus_chok1gshd
ENSAMEG00000004586	UPF2	100	98.190	ENSCGRG00000017993	Upf2	100	98.190	Cricetulus_griseus_crigri
ENSAMEG00000004586	UPF2	91	81.121	ENSCSEG00000003520	UPF2	91	80.567	Cynoglossus_semilaevis
ENSAMEG00000004586	UPF2	99	83.006	ENSCVAG00000006167	UPF2	100	82.455	Cyprinodon_variegatus
ENSAMEG00000004586	UPF2	100	98.741	ENSDNOG00000018160	UPF2	100	98.741	Dasypus_novemcinctus
ENSAMEG00000004586	UPF2	100	97.640	ENSDORG00000002478	Upf2	100	97.640	Dipodomys_ordii
ENSAMEG00000004586	UPF2	89	36.469	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSAMEG00000004586	UPF2	72	100.000	ENSETEG00000011583	-	66	100.000	Echinops_telfairi
ENSAMEG00000004586	UPF2	69	68.507	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSAMEG00000004586	UPF2	100	98.741	ENSEASG00005019274	UPF2	100	98.765	Equus_asinus_asinus
ENSAMEG00000004586	UPF2	100	98.820	ENSECAG00000017022	UPF2	100	98.820	Equus_caballus
ENSAMEG00000004586	UPF2	82	95.208	ENSEEUG00000007819	UPF2	82	95.208	Erinaceus_europaeus
ENSAMEG00000004586	UPF2	99	81.783	ENSELUG00000012014	UPF2	100	82.115	Esox_lucius
ENSAMEG00000004586	UPF2	100	99.371	ENSFCAG00000005785	UPF2	100	99.371	Felis_catus
ENSAMEG00000004586	UPF2	100	93.942	ENSFALG00000001889	UPF2	98	93.942	Ficedula_albicollis
ENSAMEG00000004586	UPF2	100	97.640	ENSFDAG00000014348	UPF2	100	97.640	Fukomys_damarensis
ENSAMEG00000004586	UPF2	99	83.597	ENSFHEG00000009826	UPF2	99	83.135	Fundulus_heteroclitus
ENSAMEG00000004586	UPF2	91	83.851	ENSGMOG00000005557	UPF2	91	83.549	Gadus_morhua
ENSAMEG00000004586	UPF2	100	94.261	ENSGALG00000033772	UPF2	100	94.261	Gallus_gallus
ENSAMEG00000004586	UPF2	100	80.031	ENSGAFG00000020867	UPF2	100	82.059	Gambusia_affinis
ENSAMEG00000004586	UPF2	90	84.469	ENSGACG00000001080	UPF2	100	82.734	Gasterosteus_aculeatus
ENSAMEG00000004586	UPF2	100	93.548	ENSGAGG00000002700	UPF2	100	93.548	Gopherus_agassizii
ENSAMEG00000004586	UPF2	100	97.720	ENSGGOG00000001479	UPF2	100	97.720	Gorilla_gorilla
ENSAMEG00000004586	UPF2	100	81.279	ENSHBUG00000004249	UPF2	100	83.125	Haplochromis_burtoni
ENSAMEG00000004586	UPF2	99	86.929	ENSHGLG00000003822	-	99	85.433	Heterocephalus_glaber_female
ENSAMEG00000004586	UPF2	100	97.876	ENSHGLG00000015176	-	100	97.876	Heterocephalus_glaber_female
ENSAMEG00000004586	UPF2	99	94.720	ENSHGLG00100010036	UPF2	89	98.473	Heterocephalus_glaber_male
ENSAMEG00000004586	UPF2	100	80.808	ENSHCOG00000004025	UPF2	99	80.808	Hippocampus_comes
ENSAMEG00000004586	UPF2	100	82.137	ENSIPUG00000015524	UPF2	100	82.436	Ictalurus_punctatus
ENSAMEG00000004586	UPF2	100	98.190	ENSSTOG00000013075	UPF2	100	98.190	Ictidomys_tridecemlineatus
ENSAMEG00000004586	UPF2	100	96.696	ENSJJAG00000004913	Upf2	100	96.696	Jaculus_jaculus
ENSAMEG00000004586	UPF2	92	84.851	ENSKMAG00000001071	UPF2	99	82.964	Kryptolebias_marmoratus
ENSAMEG00000004586	UPF2	100	83.372	ENSLBEG00000016394	-	99	83.424	Labrus_bergylta
ENSAMEG00000004586	UPF2	80	83.104	ENSLBEG00000000728	-	93	83.202	Labrus_bergylta
ENSAMEG00000004586	UPF2	99	79.781	ENSLACG00000015945	UPF2	100	80.016	Latimeria_chalumnae
ENSAMEG00000004586	UPF2	99	86.604	ENSLOCG00000015698	UPF2	100	86.525	Lepisosteus_oculatus
ENSAMEG00000004586	UPF2	100	97.799	ENSMFAG00000043865	UPF2	100	97.799	Macaca_fascicularis
ENSAMEG00000004586	UPF2	100	97.799	ENSMMUG00000008241	UPF2	100	97.799	Macaca_mulatta
ENSAMEG00000004586	UPF2	81	97.073	ENSMNEG00000008062	UPF2	100	97.073	Macaca_nemestrina
ENSAMEG00000004586	UPF2	95	99.517	ENSMLEG00000036120	UPF2	100	99.517	Mandrillus_leucophaeus
ENSAMEG00000004586	UPF2	100	82.582	ENSMAMG00000018276	UPF2	100	82.710	Mastacembelus_armatus
ENSAMEG00000004586	UPF2	100	81.279	ENSMZEG00005021595	UPF2	100	83.073	Maylandia_zebra
ENSAMEG00000004586	UPF2	99	93.470	ENSMGAG00000004573	UPF2	99	93.470	Meleagris_gallopavo
ENSAMEG00000004586	UPF2	100	95.830	ENSMAUG00000016512	Upf2	100	95.830	Mesocricetus_auratus
ENSAMEG00000004586	UPF2	95	99.490	ENSMICG00000001716	UPF2	99	99.482	Microcebus_murinus
ENSAMEG00000004586	UPF2	100	97.089	ENSMOCG00000008263	Upf2	100	97.089	Microtus_ochrogaster
ENSAMEG00000004586	UPF2	90	83.203	ENSMMOG00000006528	UPF2	100	79.515	Mola_mola
ENSAMEG00000004586	UPF2	100	96.381	ENSMODG00000016794	UPF2	100	96.381	Monodelphis_domestica
ENSAMEG00000004586	UPF2	99	82.799	ENSMALG00000002663	UPF2	100	82.694	Monopterus_albus
ENSAMEG00000004586	UPF2	100	97.404	MGP_CAROLIEiJ_G0023157	Upf2	100	98.166	Mus_caroli
ENSAMEG00000004586	UPF2	100	97.404	ENSMUSG00000043241	Upf2	100	97.404	Mus_musculus
ENSAMEG00000004586	UPF2	100	97.010	MGP_PahariEiJ_G0019217	Upf2	100	97.143	Mus_pahari
ENSAMEG00000004586	UPF2	100	97.640	MGP_SPRETEiJ_G0024075	Upf2	100	97.640	Mus_spretus
ENSAMEG00000004586	UPF2	100	99.528	ENSMPUG00000001064	UPF2	100	99.528	Mustela_putorius_furo
ENSAMEG00000004586	UPF2	99	98.272	ENSMLUG00000000228	UPF2	100	98.272	Myotis_lucifugus
ENSAMEG00000004586	UPF2	100	81.279	ENSNBRG00000013629	UPF2	100	83.073	Neolamprologus_brichardi
ENSAMEG00000004586	UPF2	100	97.720	ENSNLEG00000012058	UPF2	100	97.720	Nomascus_leucogenys
ENSAMEG00000004586	UPF2	56	97.927	ENSMEUG00000002180	-	54	97.927	Notamacropus_eugenii
ENSAMEG00000004586	UPF2	82	100.000	ENSOPRG00000006801	-	82	100.000	Ochotona_princeps
ENSAMEG00000004586	UPF2	100	97.404	ENSODEG00000001290	UPF2	100	97.404	Octodon_degus
ENSAMEG00000004586	UPF2	100	81.357	ENSONIG00000017991	UPF2	100	83.151	Oreochromis_niloticus
ENSAMEG00000004586	UPF2	99	97.649	ENSOCUG00000006230	UPF2	100	97.649	Oryctolagus_cuniculus
ENSAMEG00000004586	UPF2	100	81.634	ENSORLG00000017189	UPF2	100	82.137	Oryzias_latipes
ENSAMEG00000004586	UPF2	100	81.634	ENSORLG00020005969	UPF2	100	82.137	Oryzias_latipes_hni
ENSAMEG00000004586	UPF2	100	81.634	ENSORLG00015005713	UPF2	100	82.137	Oryzias_latipes_hsok
ENSAMEG00000004586	UPF2	100	78.972	ENSOMEG00000023420	UPF2	98	79.235	Oryzias_melastigma
ENSAMEG00000004586	UPF2	100	97.640	ENSOGAG00000005796	UPF2	100	97.640	Otolemur_garnettii
ENSAMEG00000004586	UPF2	100	98.900	ENSOARG00000014587	UPF2	100	98.900	Ovis_aries
ENSAMEG00000004586	UPF2	99	93.823	ENSPPAG00000037953	UPF2	100	94.567	Pan_paniscus
ENSAMEG00000004586	UPF2	100	99.371	ENSPPRG00000000690	UPF2	100	99.371	Panthera_pardus
ENSAMEG00000004586	UPF2	100	99.371	ENSPTIG00000008867	UPF2	100	99.371	Panthera_tigris_altaica
ENSAMEG00000004586	UPF2	100	97.720	ENSPTRG00000002291	UPF2	100	97.720	Pan_troglodytes
ENSAMEG00000004586	UPF2	100	97.877	ENSPANG00000023399	UPF2	100	97.877	Papio_anubis
ENSAMEG00000004586	UPF2	100	82.059	ENSPKIG00000025502	UPF2	100	81.123	Paramormyrops_kingsleyae
ENSAMEG00000004586	UPF2	59	92.563	ENSPSIG00000015158	UPF2	95	92.563	Pelodiscus_sinensis
ENSAMEG00000004586	UPF2	99	80.440	ENSPMGG00000005259	UPF2	100	81.697	Periophthalmus_magnuspinnatus
ENSAMEG00000004586	UPF2	93	96.210	ENSPEMG00000015731	Upf2	99	96.210	Peromyscus_maniculatus_bairdii
ENSAMEG00000004586	UPF2	100	96.066	ENSPCIG00000006656	UPF2	100	96.139	Phascolarctos_cinereus
ENSAMEG00000004586	UPF2	100	80.187	ENSPFOG00000017118	UPF2	100	82.371	Poecilia_formosa
ENSAMEG00000004586	UPF2	100	80.187	ENSPLAG00000005094	UPF2	100	82.371	Poecilia_latipinna
ENSAMEG00000004586	UPF2	100	80.187	ENSPMEG00000017009	UPF2	100	82.371	Poecilia_mexicana
ENSAMEG00000004586	UPF2	99	80.188	ENSPREG00000021880	UPF2	100	82.537	Poecilia_reticulata
ENSAMEG00000004586	UPF2	66	98.923	ENSPPYG00000002089	-	100	98.923	Pongo_abelii
ENSAMEG00000004586	UPF2	100	84.579	ENSPCAG00000000684	UPF2	100	84.579	Procavia_capensis
ENSAMEG00000004586	UPF2	99	95.114	ENSPCOG00000021656	UPF2	100	95.193	Propithecus_coquereli
ENSAMEG00000004586	UPF2	100	91.116	ENSPVAG00000017286	UPF2	100	91.116	Pteropus_vampyrus
ENSAMEG00000004586	UPF2	99	78.906	ENSPNYG00000017096	UPF2	100	80.703	Pundamilia_nyererei
ENSAMEG00000004586	UPF2	100	83.385	ENSPNAG00000009357	UPF2	100	83.931	Pygocentrus_nattereri
ENSAMEG00000004586	UPF2	99	91.601	ENSRNOG00000023593	Upf2	100	98.889	Rattus_norvegicus
ENSAMEG00000004586	UPF2	99	96.848	ENSRBIG00000037780	UPF2	100	96.848	Rhinopithecus_bieti
ENSAMEG00000004586	UPF2	100	97.720	ENSRROG00000043547	UPF2	100	97.720	Rhinopithecus_roxellana
ENSAMEG00000004586	UPF2	100	97.484	ENSSBOG00000020012	UPF2	100	97.484	Saimiri_boliviensis_boliviensis
ENSAMEG00000004586	UPF2	100	81.761	ENSSFOG00015023788	upf2	100	83.164	Scleropages_formosus
ENSAMEG00000004586	UPF2	90	83.088	ENSSMAG00000007637	UPF2	100	79.380	Scophthalmus_maximus
ENSAMEG00000004586	UPF2	100	83.229	ENSSDUG00000017244	UPF2	99	83.229	Seriola_dumerili
ENSAMEG00000004586	UPF2	99	81.597	ENSSLDG00000016866	UPF2	100	81.676	Seriola_lalandi_dorsalis
ENSAMEG00000004586	UPF2	100	96.459	ENSSARG00000008615	UPF2	100	96.459	Sorex_araneus
ENSAMEG00000004586	UPF2	99	90.787	ENSSPUG00000014544	UPF2	99	90.787	Sphenodon_punctatus
ENSAMEG00000004586	UPF2	68	98.962	ENSSSCG00000011117	-	100	98.849	Sus_scrofa
ENSAMEG00000004586	UPF2	99	94.085	ENSTGUG00000002163	-	100	94.085	Taeniopygia_guttata
ENSAMEG00000004586	UPF2	100	82.555	ENSTRUG00000007519	UPF2	99	82.527	Takifugu_rubripes
ENSAMEG00000004586	UPF2	93	90.432	ENSTBEG00000012679	UPF2	93	90.771	Tupaia_belangeri
ENSAMEG00000004586	UPF2	100	98.662	ENSTTRG00000016388	UPF2	100	98.662	Tursiops_truncatus
ENSAMEG00000004586	UPF2	94	100.000	ENSUAMG00000023560	UPF2	100	99.716	Ursus_americanus
ENSAMEG00000004586	UPF2	100	99.685	ENSUMAG00000012953	UPF2	95	99.685	Ursus_maritimus
ENSAMEG00000004586	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSAMEG00000004586	UPF2	100	99.449	ENSVVUG00000006166	UPF2	100	99.449	Vulpes_vulpes
ENSAMEG00000004586	UPF2	100	82.398	ENSXETG00000033103	UPF2	100	81.102	Xenopus_tropicalis
ENSAMEG00000004586	UPF2	92	84.701	ENSXCOG00000011604	UPF2	100	82.109	Xiphophorus_couchianus
ENSAMEG00000004586	UPF2	92	84.983	ENSXMAG00000017209	UPF2	100	82.059	Xiphophorus_maculatus