EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMEG00000004664 (Gene tree)
Gene ID: 100474099
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Plus strand
Length: 406926 bases
Position: chrGL192359.1:1106148-1513073
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000005027	TUDOR	PF00567.24	4.7e-28	1	1
ENSAMEP00000005027	SNase	PF00565.17	3.6e-68	1	5
ENSAMEP00000005027	SNase	PF00565.17	3.6e-68	2	5
ENSAMEP00000005027	SNase	PF00565.17	3.6e-68	3	5
ENSAMEP00000005027	SNase	PF00565.17	3.6e-68	4	5
ENSAMEP00000005027	SNase	PF00565.17	3.6e-68	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000005234	SND1-201	2901	-	ENSAMEP00000005027	966 (aa)	-	G1LDP5

Gene Model

Click here to download ENSAMEG00000004664's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000004664's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000004664	SND1	94	98.575	ENSG00000197157	SND1	100	98.575	Homo_sapiens
ENSAMEG00000004664	SND1	94	83.698	ENSAPOG00000017599	snd1	100	83.698	Acanthochromis_polyacanthus
ENSAMEG00000004664	SND1	93	82.011	ENSACIG00000003551	snd1	100	81.051	Amphilophus_citrinellus
ENSAMEG00000004664	SND1	94	83.479	ENSAOCG00000014166	snd1	100	83.479	Amphiprion_ocellaris
ENSAMEG00000004664	SND1	94	83.479	ENSAPEG00000007067	snd1	100	83.479	Amphiprion_percula
ENSAMEG00000004664	SND1	93	82.943	ENSATEG00000018475	snd1	89	82.943	Anabas_testudineus
ENSAMEG00000004664	SND1	94	98.794	ENSANAG00000034463	SND1	100	98.794	Aotus_nancymaae
ENSAMEG00000004664	SND1	94	83.151	ENSACLG00000022897	snd1	100	83.151	Astatotilapia_calliptera
ENSAMEG00000004664	SND1	94	84.303	ENSAMXG00000016318	snd1	99	84.303	Astyanax_mexicanus
ENSAMEG00000004664	SND1	94	98.355	ENSBTAG00000010692	SND1	100	98.355	Bos_taurus
ENSAMEG00000004664	SND1	92	46.280	WBGene00006626	tsn-1	98	46.878	Caenorhabditis_elegans
ENSAMEG00000004664	SND1	94	98.575	ENSCJAG00000017668	SND1	100	98.575	Callithrix_jacchus
ENSAMEG00000004664	SND1	94	99.232	ENSCAFG00000001700	SND1	100	99.232	Canis_familiaris
ENSAMEG00000004664	SND1	94	99.232	ENSCAFG00020021639	SND1	100	99.232	Canis_lupus_dingo
ENSAMEG00000004664	SND1	94	98.684	ENSCHIG00000023390	SND1	100	98.684	Capra_hircus
ENSAMEG00000004664	SND1	69	98.596	ENSTSYG00000004979	SND1	96	98.596	Carlito_syrichta
ENSAMEG00000004664	SND1	93	84.590	ENSCAPG00000010677	SND1	98	84.590	Cavia_aperea
ENSAMEG00000004664	SND1	94	97.588	ENSCPOG00000006251	SND1	100	97.588	Cavia_porcellus
ENSAMEG00000004664	SND1	94	98.904	ENSCCAG00000036847	SND1	100	98.904	Cebus_capucinus
ENSAMEG00000004664	SND1	94	98.794	ENSCATG00000035214	SND1	100	98.794	Cercocebus_atys
ENSAMEG00000004664	SND1	94	97.807	ENSCLAG00000011796	SND1	100	97.807	Chinchilla_lanigera
ENSAMEG00000004664	SND1	94	98.794	ENSCSAG00000010182	SND1	100	98.794	Chlorocebus_sabaeus
ENSAMEG00000004664	SND1	73	91.176	ENSCHOG00000002218	SND1	86	91.176	Choloepus_hoffmanni
ENSAMEG00000004664	SND1	94	91.996	ENSCPBG00000018094	SND1	100	91.996	Chrysemys_picta_bellii
ENSAMEG00000004664	SND1	92	56.954	ENSCING00000000524	-	99	56.277	Ciona_intestinalis
ENSAMEG00000004664	SND1	94	57.734	ENSCSAVG00000008807	-	99	57.734	Ciona_savignyi
ENSAMEG00000004664	SND1	94	98.794	ENSCANG00000035119	SND1	100	98.794	Colobus_angolensis_palliatus
ENSAMEG00000004664	SND1	94	96.930	ENSCGRG00001022514	Snd1	100	96.930	Cricetulus_griseus_chok1gshd
ENSAMEG00000004664	SND1	92	97.065	ENSCGRG00000012277	Snd1	99	97.065	Cricetulus_griseus_crigri
ENSAMEG00000004664	SND1	93	84.040	ENSCSEG00000008661	snd1	98	84.040	Cynoglossus_semilaevis
ENSAMEG00000004664	SND1	94	83.807	ENSCVAG00000010316	snd1	100	83.486	Cyprinodon_variegatus
ENSAMEG00000004664	SND1	94	84.481	ENSDARG00000006766	snd1	98	87.120	Danio_rerio
ENSAMEG00000004664	SND1	92	96.167	ENSDNOG00000006795	SND1	100	96.167	Dasypus_novemcinctus
ENSAMEG00000004664	SND1	94	98.246	ENSDORG00000000336	Snd1	100	98.246	Dipodomys_ordii
ENSAMEG00000004664	SND1	93	50.811	FBgn0035121	Tudor-SN	99	50.318	Drosophila_melanogaster
ENSAMEG00000004664	SND1	85	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSAMEG00000004664	SND1	54	67.204	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSAMEG00000004664	SND1	94	97.414	ENSEASG00005008513	SND1	100	97.414	Equus_asinus_asinus
ENSAMEG00000004664	SND1	94	99.013	ENSECAG00000011451	SND1	100	99.013	Equus_caballus
ENSAMEG00000004664	SND1	94	86.623	ENSEEUG00000014737	SND1	100	86.623	Erinaceus_europaeus
ENSAMEG00000004664	SND1	95	81.358	ENSELUG00000001805	snd1	98	81.358	Esox_lucius
ENSAMEG00000004664	SND1	94	99.123	ENSFCAG00000008289	SND1	100	99.123	Felis_catus
ENSAMEG00000004664	SND1	94	97.917	ENSFDAG00000015881	SND1	100	97.917	Fukomys_damarensis
ENSAMEG00000004664	SND1	94	81.916	ENSFHEG00000004093	snd1	99	83.620	Fundulus_heteroclitus
ENSAMEG00000004664	SND1	60	74.576	ENSGMOG00000018932	snd1	66	74.576	Gadus_morhua
ENSAMEG00000004664	SND1	94	84.136	ENSGAFG00000008421	snd1	100	84.136	Gambusia_affinis
ENSAMEG00000004664	SND1	94	53.629	ENSGACG00000019793	snd1	100	53.629	Gasterosteus_aculeatus
ENSAMEG00000004664	SND1	94	98.794	ENSGGOG00000009614	SND1	100	98.794	Gorilla_gorilla
ENSAMEG00000004664	SND1	94	83.187	ENSHBUG00000019135	snd1	99	83.187	Haplochromis_burtoni
ENSAMEG00000004664	SND1	94	97.588	ENSHGLG00000003618	SND1	100	97.588	Heterocephalus_glaber_female
ENSAMEG00000004664	SND1	94	97.133	ENSHGLG00100012449	SND1	100	97.133	Heterocephalus_glaber_male
ENSAMEG00000004664	SND1	94	82.604	ENSHCOG00000005266	snd1	100	82.604	Hippocampus_comes
ENSAMEG00000004664	SND1	94	82.751	ENSIPUG00000013279	snd1	100	82.751	Ictalurus_punctatus
ENSAMEG00000004664	SND1	94	98.355	ENSSTOG00000002140	SND1	100	98.355	Ictidomys_tridecemlineatus
ENSAMEG00000004664	SND1	94	98.465	ENSJJAG00000009561	Snd1	100	98.465	Jaculus_jaculus
ENSAMEG00000004664	SND1	94	84.026	ENSKMAG00000016997	snd1	100	84.026	Kryptolebias_marmoratus
ENSAMEG00000004664	SND1	94	83.914	ENSLBEG00000013563	snd1	100	82.385	Labrus_bergylta
ENSAMEG00000004664	SND1	93	85.369	ENSLOCG00000015537	snd1	100	84.615	Lepisosteus_oculatus
ENSAMEG00000004664	SND1	94	97.807	ENSLAFG00000009696	SND1	100	97.807	Loxodonta_africana
ENSAMEG00000004664	SND1	94	98.794	ENSMFAG00000038114	SND1	100	98.794	Macaca_fascicularis
ENSAMEG00000004664	SND1	94	98.794	ENSMMUG00000015432	SND1	100	98.794	Macaca_mulatta
ENSAMEG00000004664	SND1	94	98.794	ENSMNEG00000039808	SND1	100	98.873	Macaca_nemestrina
ENSAMEG00000004664	SND1	94	98.904	ENSMLEG00000029040	SND1	100	98.985	Mandrillus_leucophaeus
ENSAMEG00000004664	SND1	94	83.260	ENSMAMG00000011739	snd1	100	83.260	Mastacembelus_armatus
ENSAMEG00000004664	SND1	94	83.151	ENSMZEG00005005681	snd1	100	83.151	Maylandia_zebra
ENSAMEG00000004664	SND1	100	96.273	ENSMICG00000000097	SND1	100	98.575	Microcebus_murinus
ENSAMEG00000004664	SND1	94	97.807	ENSMOCG00000005040	Snd1	100	97.807	Microtus_ochrogaster
ENSAMEG00000004664	SND1	94	83.260	ENSMMOG00000001795	snd1	100	83.260	Mola_mola
ENSAMEG00000004664	SND1	93	95.773	ENSMODG00000015182	SND1	100	95.724	Monodelphis_domestica
ENSAMEG00000004664	SND1	94	83.151	ENSMALG00000012071	snd1	100	83.151	Monopterus_albus
ENSAMEG00000004664	SND1	94	97.368	MGP_CAROLIEiJ_G0028159	Snd1	100	97.368	Mus_caroli
ENSAMEG00000004664	SND1	94	97.149	ENSMUSG00000001424	Snd1	100	97.149	Mus_musculus
ENSAMEG00000004664	SND1	94	97.368	MGP_PahariEiJ_G0021917	Snd1	100	97.647	Mus_pahari
ENSAMEG00000004664	SND1	94	97.368	MGP_SPRETEiJ_G0029159	Snd1	100	97.368	Mus_spretus
ENSAMEG00000004664	SND1	94	98.465	ENSMPUG00000006545	SND1	100	98.465	Mustela_putorius_furo
ENSAMEG00000004664	SND1	92	97.430	ENSMLUG00000017130	SND1	99	97.430	Myotis_lucifugus
ENSAMEG00000004664	SND1	94	97.588	ENSNGAG00000011186	Snd1	100	97.588	Nannospalax_galili
ENSAMEG00000004664	SND1	94	83.042	ENSNBRG00000006681	snd1	100	83.042	Neolamprologus_brichardi
ENSAMEG00000004664	SND1	94	98.684	ENSNLEG00000012263	SND1	100	98.873	Nomascus_leucogenys
ENSAMEG00000004664	SND1	86	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSAMEG00000004664	SND1	94	98.246	ENSODEG00000011502	SND1	100	98.246	Octodon_degus
ENSAMEG00000004664	SND1	96	82.131	ENSONIG00000011481	snd1	98	82.860	Oreochromis_niloticus
ENSAMEG00000004664	SND1	92	94.607	ENSOANG00000000817	SND1	99	93.407	Ornithorhynchus_anatinus
ENSAMEG00000004664	SND1	94	97.149	ENSOCUG00000001620	SND1	100	97.149	Oryctolagus_cuniculus
ENSAMEG00000004664	SND1	93	83.724	ENSORLG00000015201	snd1	100	82.713	Oryzias_latipes
ENSAMEG00000004664	SND1	93	83.835	ENSORLG00020013991	snd1	100	82.823	Oryzias_latipes_hni
ENSAMEG00000004664	SND1	93	83.835	ENSORLG00015012436	snd1	100	82.823	Oryzias_latipes_hsok
ENSAMEG00000004664	SND1	94	82.932	ENSOMEG00000006406	snd1	99	82.932	Oryzias_melastigma
ENSAMEG00000004664	SND1	100	96.070	ENSOGAG00000013356	SND1	100	96.070	Otolemur_garnettii
ENSAMEG00000004664	SND1	92	95.941	ENSOARG00000002149	SND1	100	95.941	Ovis_aries
ENSAMEG00000004664	SND1	94	98.684	ENSPPAG00000042947	SND1	100	98.684	Pan_paniscus
ENSAMEG00000004664	SND1	94	99.123	ENSPPRG00000004494	SND1	100	99.123	Panthera_pardus
ENSAMEG00000004664	SND1	94	99.013	ENSPTIG00000014214	SND1	100	99.013	Panthera_tigris_altaica
ENSAMEG00000004664	SND1	94	98.684	ENSPTRG00000023911	SND1	100	98.684	Pan_troglodytes
ENSAMEG00000004664	SND1	92	98.871	ENSPANG00000011997	SND1	99	98.871	Papio_anubis
ENSAMEG00000004664	SND1	93	81.408	ENSPKIG00000023494	snd1	100	80.673	Paramormyrops_kingsleyae
ENSAMEG00000004664	SND1	87	82.796	ENSPMGG00000003629	snd1	100	82.796	Periophthalmus_magnuspinnatus
ENSAMEG00000004664	SND1	94	97.697	ENSPEMG00000010240	Snd1	100	97.697	Peromyscus_maniculatus_bairdii
ENSAMEG00000004664	SND1	91	73.619	ENSPMAG00000007915	-	99	73.619	Petromyzon_marinus
ENSAMEG00000004664	SND1	94	96.162	ENSPCIG00000011561	SND1	100	96.162	Phascolarctos_cinereus
ENSAMEG00000004664	SND1	94	83.589	ENSPFOG00000001557	snd1	100	83.589	Poecilia_formosa
ENSAMEG00000004664	SND1	95	83.170	ENSPLAG00000018459	snd1	98	83.170	Poecilia_latipinna
ENSAMEG00000004664	SND1	94	84.026	ENSPMEG00000006803	snd1	100	84.026	Poecilia_mexicana
ENSAMEG00000004664	SND1	94	83.917	ENSPREG00000002189	snd1	100	83.917	Poecilia_reticulata
ENSAMEG00000004664	SND1	88	98.762	ENSPPYG00000017972	SND1	100	98.762	Pongo_abelii
ENSAMEG00000004664	SND1	94	86.623	ENSPCAG00000011305	SND1	100	86.623	Procavia_capensis
ENSAMEG00000004664	SND1	94	98.575	ENSPCOG00000026791	SND1	100	98.647	Propithecus_coquereli
ENSAMEG00000004664	SND1	94	96.711	ENSPVAG00000013945	SND1	100	96.711	Pteropus_vampyrus
ENSAMEG00000004664	SND1	94	83.151	ENSPNYG00000000932	snd1	100	83.151	Pundamilia_nyererei
ENSAMEG00000004664	SND1	94	83.515	ENSPNAG00000001206	snd1	100	83.515	Pygocentrus_nattereri
ENSAMEG00000004664	SND1	94	97.033	ENSRNOG00000031173	Snd1	100	96.054	Rattus_norvegicus
ENSAMEG00000004664	SND1	69	99.238	ENSRBIG00000027782	-	93	99.238	Rhinopithecus_bieti
ENSAMEG00000004664	SND1	94	98.794	ENSRROG00000033020	SND1	100	98.794	Rhinopithecus_roxellana
ENSAMEG00000004664	SND1	94	98.794	ENSSBOG00000032461	SND1	100	98.794	Saimiri_boliviensis_boliviensis
ENSAMEG00000004664	SND1	92	92.809	ENSSHAG00000015359	SND1	100	92.809	Sarcophilus_harrisii
ENSAMEG00000004664	SND1	94	82.302	ENSSFOG00015001103	snd1	100	82.302	Scleropages_formosus
ENSAMEG00000004664	SND1	93	83.705	ENSSMAG00000001932	snd1	95	82.424	Scophthalmus_maximus
ENSAMEG00000004664	SND1	96	82.454	ENSSDUG00000002699	snd1	94	83.297	Seriola_dumerili
ENSAMEG00000004664	SND1	94	76.258	ENSSLDG00000001950	snd1	100	76.258	Seriola_lalandi_dorsalis
ENSAMEG00000004664	SND1	81	99.057	ENSSARG00000004877	SND1	92	99.057	Sorex_araneus
ENSAMEG00000004664	SND1	69	87.652	ENSSPUG00000017586	SND1	96	87.652	Sphenodon_punctatus
ENSAMEG00000004664	SND1	70	84.654	ENSSPAG00000021398	snd1	99	84.654	Stegastes_partitus
ENSAMEG00000004664	SND1	94	98.575	ENSSSCG00000016590	SND1	100	98.575	Sus_scrofa
ENSAMEG00000004664	SND1	94	82.495	ENSTRUG00000014067	snd1	100	82.495	Takifugu_rubripes
ENSAMEG00000004664	SND1	94	83.042	ENSTNIG00000011019	snd1	98	85.309	Tetraodon_nigroviridis
ENSAMEG00000004664	SND1	88	92.824	ENSTBEG00000003999	SND1	100	92.824	Tupaia_belangeri
ENSAMEG00000004664	SND1	94	94.298	ENSTTRG00000006059	SND1	100	94.298	Tursiops_truncatus
ENSAMEG00000004664	SND1	86	99.432	ENSUAMG00000005604	-	93	99.432	Ursus_americanus
ENSAMEG00000004664	SND1	67	89.922	ENSUAMG00000002820	-	90	90.390	Ursus_americanus
ENSAMEG00000004664	SND1	94	99.342	ENSUMAG00000005960	SND1	100	99.342	Ursus_maritimus
ENSAMEG00000004664	SND1	69	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSAMEG00000004664	SND1	94	99.232	ENSVVUG00000007226	SND1	100	99.232	Vulpes_vulpes
ENSAMEG00000004664	SND1	92	84.893	ENSXETG00000023043	snd1	100	84.817	Xenopus_tropicalis
ENSAMEG00000004664	SND1	87	81.280	ENSXCOG00000013629	snd1	99	81.280	Xiphophorus_couchianus
ENSAMEG00000004664	SND1	94	84.136	ENSXMAG00000011469	snd1	100	84.136	Xiphophorus_maculatus