EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMEG00000005484 (Gene tree)
Gene ID: 100465685
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Minus strand
Length: 4771 bases
Position: chrGL193358.1:457634-462404
Accession: 20470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000005782	LSM	PF01423.22	2.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000006024	LSM7-201	309	-	ENSAMEP00000005782	103 (aa)	-	G1LFU3

Gene Model

Click here to download ENSAMEG00000005484's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml03018	RNA degradation	KEGG
aml03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000005484's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMEG00000005484	LSM7	72	35.526	ENSAMEG00000001162	LSM8	73	35.526
ENSAMEG00000005484	LSM7	69	38.028	ENSAMEG00000016000	SNRPG	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000005484	LSM7	100	97.087	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSAMEG00000005484	LSM7	92	93.684	ENSAPOG00000015573	lsm7	82	93.684	Acanthochromis_polyacanthus
ENSAMEG00000005484	LSM7	94	93.814	ENSACIG00000006498	lsm7	77	93.814	Amphilophus_citrinellus
ENSAMEG00000005484	LSM7	99	93.137	ENSAOCG00000001077	lsm7	93	93.137	Amphiprion_ocellaris
ENSAMEG00000005484	LSM7	100	92.233	ENSAPEG00000000694	lsm7	100	92.233	Amphiprion_percula
ENSAMEG00000005484	LSM7	100	94.175	ENSAPEG00000024447	lsm7	92	94.175	Amphiprion_percula
ENSAMEG00000005484	LSM7	100	92.233	ENSATEG00000008557	lsm7	100	92.233	Anabas_testudineus
ENSAMEG00000005484	LSM7	100	97.087	ENSANAG00000037196	-	100	97.087	Aotus_nancymaae
ENSAMEG00000005484	LSM7	100	89.320	ENSANAG00000022222	-	100	89.320	Aotus_nancymaae
ENSAMEG00000005484	LSM7	100	91.262	ENSACLG00000021021	lsm7	100	91.262	Astatotilapia_calliptera
ENSAMEG00000005484	LSM7	100	92.233	ENSAMXG00000037622	lsm7	100	92.233	Astyanax_mexicanus
ENSAMEG00000005484	LSM7	100	97.087	ENSBTAG00000004521	LSM7	100	97.087	Bos_taurus
ENSAMEG00000005484	LSM7	98	56.436	WBGene00003081	lsm-7	97	56.436	Caenorhabditis_elegans
ENSAMEG00000005484	LSM7	54	94.643	ENSCJAG00000039713	-	68	94.643	Callithrix_jacchus
ENSAMEG00000005484	LSM7	99	100.000	ENSCAFG00000019409	LSM7	99	100.000	Canis_familiaris
ENSAMEG00000005484	LSM7	99	100.000	ENSCAFG00020018168	LSM7	75	99.020	Canis_lupus_dingo
ENSAMEG00000005484	LSM7	100	99.029	ENSCHIG00000023663	LSM7	100	99.029	Capra_hircus
ENSAMEG00000005484	LSM7	69	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSAMEG00000005484	LSM7	100	97.087	ENSCPOG00000014025	LSM7	100	99.010	Cavia_porcellus
ENSAMEG00000005484	LSM7	98	99.010	ENSCCAG00000035456	LSM7	99	99.010	Cebus_capucinus
ENSAMEG00000005484	LSM7	100	97.087	ENSCATG00000023543	LSM7	100	97.087	Cercocebus_atys
ENSAMEG00000005484	LSM7	100	97.087	ENSCLAG00000011635	LSM7	100	97.087	Chinchilla_lanigera
ENSAMEG00000005484	LSM7	100	97.087	ENSCSAG00000011599	LSM7	100	97.087	Chlorocebus_sabaeus
ENSAMEG00000005484	LSM7	70	93.056	ENSCPBG00000021317	LSM7	77	93.056	Chrysemys_picta_bellii
ENSAMEG00000005484	LSM7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSAMEG00000005484	LSM7	100	97.087	ENSCANG00000035525	LSM7	100	97.087	Colobus_angolensis_palliatus
ENSAMEG00000005484	LSM7	100	96.117	ENSCGRG00001000807	-	100	96.117	Cricetulus_griseus_chok1gshd
ENSAMEG00000005484	LSM7	87	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
ENSAMEG00000005484	LSM7	87	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
ENSAMEG00000005484	LSM7	99	98.039	ENSCGRG00000014355	-	98	98.039	Cricetulus_griseus_crigri
ENSAMEG00000005484	LSM7	99	93.137	ENSCSEG00000014900	lsm7	86	94.059	Cynoglossus_semilaevis
ENSAMEG00000005484	LSM7	99	94.118	ENSCVAG00000021091	lsm7	94	94.118	Cyprinodon_variegatus
ENSAMEG00000005484	LSM7	100	92.233	ENSDARG00000058328	lsm7	100	92.233	Danio_rerio
ENSAMEG00000005484	LSM7	98	99.010	ENSDORG00000024460	Lsm7	99	99.010	Dipodomys_ordii
ENSAMEG00000005484	LSM7	94	77.551	FBgn0261068	LSm7	89	77.551	Drosophila_melanogaster
ENSAMEG00000005484	LSM7	99	96.078	ENSETEG00000012788	LSM7	100	96.078	Echinops_telfairi
ENSAMEG00000005484	LSM7	81	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
ENSAMEG00000005484	LSM7	100	83.495	ENSEBUG00000016992	lsm7	99	83.495	Eptatretus_burgeri
ENSAMEG00000005484	LSM7	100	93.204	ENSECAG00000001440	LSM7	66	93.204	Equus_caballus
ENSAMEG00000005484	LSM7	100	98.058	ENSFCAG00000003445	LSM7	100	98.058	Felis_catus
ENSAMEG00000005484	LSM7	98	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSAMEG00000005484	LSM7	93	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSAMEG00000005484	LSM7	89	94.565	ENSFHEG00000006349	lsm7	90	95.050	Fundulus_heteroclitus
ENSAMEG00000005484	LSM7	100	92.233	ENSGMOG00000013320	lsm7	100	92.233	Gadus_morhua
ENSAMEG00000005484	LSM7	100	93.204	ENSGAFG00000013902	lsm7	100	93.204	Gambusia_affinis
ENSAMEG00000005484	LSM7	100	92.233	ENSGACG00000010390	lsm7	100	92.233	Gasterosteus_aculeatus
ENSAMEG00000005484	LSM7	100	97.087	ENSGGOG00000010172	LSM7	100	97.087	Gorilla_gorilla
ENSAMEG00000005484	LSM7	99	93.137	ENSHBUG00000004616	lsm7	100	91.262	Haplochromis_burtoni
ENSAMEG00000005484	LSM7	100	97.087	ENSHGLG00000010587	LSM7	100	97.087	Heterocephalus_glaber_female
ENSAMEG00000005484	LSM7	100	97.087	ENSHGLG00100000852	LSM7	100	97.087	Heterocephalus_glaber_male
ENSAMEG00000005484	LSM7	98	93.069	ENSHCOG00000020252	lsm7	100	93.069	Hippocampus_comes
ENSAMEG00000005484	LSM7	100	92.233	ENSIPUG00000024724	lsm7	100	92.233	Ictalurus_punctatus
ENSAMEG00000005484	LSM7	99	99.020	ENSSTOG00000028372	LSM7	99	99.010	Ictidomys_tridecemlineatus
ENSAMEG00000005484	LSM7	98	97.030	ENSJJAG00000001936	Lsm7	98	97.030	Jaculus_jaculus
ENSAMEG00000005484	LSM7	100	93.204	ENSKMAG00000022151	lsm7	100	93.204	Kryptolebias_marmoratus
ENSAMEG00000005484	LSM7	100	92.233	ENSLBEG00000005203	lsm7	100	92.233	Labrus_bergylta
ENSAMEG00000005484	LSM7	100	97.087	ENSLACG00000015700	LSM7	100	97.087	Latimeria_chalumnae
ENSAMEG00000005484	LSM7	100	96.117	ENSLOCG00000004356	lsm7	100	96.117	Lepisosteus_oculatus
ENSAMEG00000005484	LSM7	99	99.020	ENSLAFG00000029302	LSM7	99	99.020	Loxodonta_africana
ENSAMEG00000005484	LSM7	100	97.087	ENSMFAG00000044572	LSM7	100	97.087	Macaca_fascicularis
ENSAMEG00000005484	LSM7	100	97.087	ENSMMUG00000000452	LSM7	99	99.010	Macaca_mulatta
ENSAMEG00000005484	LSM7	100	97.087	ENSMNEG00000004393	LSM7	100	97.087	Macaca_nemestrina
ENSAMEG00000005484	LSM7	100	97.087	ENSMLEG00000030852	LSM7	100	99.010	Mandrillus_leucophaeus
ENSAMEG00000005484	LSM7	100	91.262	ENSMAMG00000005410	lsm7	100	91.262	Mastacembelus_armatus
ENSAMEG00000005484	LSM7	100	91.262	ENSMZEG00005028055	lsm7	100	91.262	Maylandia_zebra
ENSAMEG00000005484	LSM7	100	95.146	ENSMGAG00000000750	LSM7	89	95.146	Meleagris_gallopavo
ENSAMEG00000005484	LSM7	100	97.087	ENSMAUG00000009276	Lsm7	100	97.087	Mesocricetus_auratus
ENSAMEG00000005484	LSM7	100	98.058	ENSMICG00000009988	-	100	98.058	Microcebus_murinus
ENSAMEG00000005484	LSM7	100	97.087	ENSMICG00000028619	-	100	97.087	Microcebus_murinus
ENSAMEG00000005484	LSM7	100	96.117	ENSMOCG00000016925	Lsm7	100	96.117	Microtus_ochrogaster
ENSAMEG00000005484	LSM7	100	92.233	ENSMMOG00000019645	lsm7	98	92.233	Mola_mola
ENSAMEG00000005484	LSM7	100	96.117	ENSMODG00000004722	LSM7	100	96.117	Monodelphis_domestica
ENSAMEG00000005484	LSM7	100	91.262	ENSMALG00000014511	lsm7	79	91.262	Monopterus_albus
ENSAMEG00000005484	LSM7	100	95.146	MGP_CAROLIEiJ_G0015607	Lsm7	100	95.146	Mus_caroli
ENSAMEG00000005484	LSM7	100	95.146	ENSMUSG00000035215	Lsm7	100	95.146	Mus_musculus
ENSAMEG00000005484	LSM7	100	95.146	MGP_PahariEiJ_G0031020	Lsm7	100	95.146	Mus_pahari
ENSAMEG00000005484	LSM7	100	95.146	MGP_SPRETEiJ_G0016425	Lsm7	100	95.146	Mus_spretus
ENSAMEG00000005484	LSM7	100	89.320	ENSMLUG00000024002	-	94	89.320	Myotis_lucifugus
ENSAMEG00000005484	LSM7	100	98.058	ENSMLUG00000013097	-	100	98.058	Myotis_lucifugus
ENSAMEG00000005484	LSM7	100	95.146	ENSNGAG00000021637	Lsm7	100	95.146	Nannospalax_galili
ENSAMEG00000005484	LSM7	91	93.617	ENSNBRG00000001237	-	82	92.233	Neolamprologus_brichardi
ENSAMEG00000005484	LSM7	99	93.137	ENSNBRG00000015770	lsm7	88	93.137	Neolamprologus_brichardi
ENSAMEG00000005484	LSM7	100	97.087	ENSNLEG00000002265	LSM7	100	97.087	Nomascus_leucogenys
ENSAMEG00000005484	LSM7	100	97.087	ENSODEG00000013590	-	100	97.087	Octodon_degus
ENSAMEG00000005484	LSM7	100	76.699	ENSODEG00000008190	-	100	76.699	Octodon_degus
ENSAMEG00000005484	LSM7	100	90.291	ENSODEG00000018769	-	100	90.291	Octodon_degus
ENSAMEG00000005484	LSM7	100	91.262	ENSONIG00000001801	lsm7	89	91.262	Oreochromis_niloticus
ENSAMEG00000005484	LSM7	100	94.175	ENSORLG00000023951	lsm7	100	92.233	Oryzias_latipes
ENSAMEG00000005484	LSM7	100	94.175	ENSORLG00020022226	lsm7	100	92.233	Oryzias_latipes_hni
ENSAMEG00000005484	LSM7	100	94.175	ENSORLG00015020044	lsm7	94	93.137	Oryzias_latipes_hsok
ENSAMEG00000005484	LSM7	100	92.233	ENSOMEG00000012806	lsm7	100	92.233	Oryzias_melastigma
ENSAMEG00000005484	LSM7	99	97.059	ENSOGAG00000000144	-	100	97.059	Otolemur_garnettii
ENSAMEG00000005484	LSM7	100	85.437	ENSOGAG00000024373	-	100	85.437	Otolemur_garnettii
ENSAMEG00000005484	LSM7	100	99.029	ENSOARG00000014013	LSM7	100	99.029	Ovis_aries
ENSAMEG00000005484	LSM7	100	97.087	ENSPPAG00000026500	LSM7	100	97.087	Pan_paniscus
ENSAMEG00000005484	LSM7	100	98.058	ENSPPRG00000008624	LSM7	100	98.058	Panthera_pardus
ENSAMEG00000005484	LSM7	98	100.000	ENSPTIG00000016252	LSM7	98	100.000	Panthera_tigris_altaica
ENSAMEG00000005484	LSM7	100	97.087	ENSPTRG00000010233	LSM7	100	97.087	Pan_troglodytes
ENSAMEG00000005484	LSM7	100	97.087	ENSPANG00000020668	LSM7	100	97.087	Papio_anubis
ENSAMEG00000005484	LSM7	100	94.175	ENSPKIG00000011325	lsm7	100	94.175	Paramormyrops_kingsleyae
ENSAMEG00000005484	LSM7	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSAMEG00000005484	LSM7	100	92.233	ENSPMGG00000006498	lsm7	100	92.233	Periophthalmus_magnuspinnatus
ENSAMEG00000005484	LSM7	100	96.117	ENSPCIG00000030454	LSM7	99	98.020	Phascolarctos_cinereus
ENSAMEG00000005484	LSM7	100	94.175	ENSPFOG00000012467	lsm7	91	94.175	Poecilia_formosa
ENSAMEG00000005484	LSM7	100	94.175	ENSPLAG00000000252	lsm7	94	94.059	Poecilia_latipinna
ENSAMEG00000005484	LSM7	100	94.175	ENSPMEG00000000587	lsm7	94	94.059	Poecilia_mexicana
ENSAMEG00000005484	LSM7	78	72.840	ENSPREG00000016718	lsm7	65	72.840	Poecilia_reticulata
ENSAMEG00000005484	LSM7	71	95.890	ENSPPYG00000009348	-	50	95.890	Pongo_abelii
ENSAMEG00000005484	LSM7	100	97.087	ENSPCOG00000017177	LSM7	99	99.010	Propithecus_coquereli
ENSAMEG00000005484	LSM7	100	91.262	ENSPNYG00000006938	lsm7	100	91.262	Pundamilia_nyererei
ENSAMEG00000005484	LSM7	100	92.233	ENSPNAG00000010141	lsm7	99	94.059	Pygocentrus_nattereri
ENSAMEG00000005484	LSM7	100	95.146	ENSRNOG00000019552	Lsm7	100	95.146	Rattus_norvegicus
ENSAMEG00000005484	LSM7	100	97.087	ENSRBIG00000035978	LSM7	100	97.087	Rhinopithecus_bieti
ENSAMEG00000005484	LSM7	100	97.087	ENSRROG00000034044	LSM7	100	97.087	Rhinopithecus_roxellana
ENSAMEG00000005484	LSM7	86	48.913	YNL147W	-	80	48.913	Saccharomyces_cerevisiae
ENSAMEG00000005484	LSM7	100	97.087	ENSSBOG00000034899	LSM7	100	97.087	Saimiri_boliviensis_boliviensis
ENSAMEG00000005484	LSM7	100	92.233	ENSSFOG00015006728	lsm7	100	92.233	Scleropages_formosus
ENSAMEG00000005484	LSM7	100	93.204	ENSSMAG00000004195	lsm7	94	93.204	Scophthalmus_maximus
ENSAMEG00000005484	LSM7	100	92.233	ENSSDUG00000001863	lsm7	100	92.233	Seriola_dumerili
ENSAMEG00000005484	LSM7	100	92.233	ENSSLDG00000016339	lsm7	100	92.233	Seriola_lalandi_dorsalis
ENSAMEG00000005484	LSM7	100	92.233	ENSSPAG00000015221	lsm7	100	92.233	Stegastes_partitus
ENSAMEG00000005484	LSM7	98	99.010	ENSSSCG00000013463	LSM7	99	99.010	Sus_scrofa
ENSAMEG00000005484	LSM7	98	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSAMEG00000005484	LSM7	100	92.233	ENSTRUG00000022913	lsm7	100	92.233	Takifugu_rubripes
ENSAMEG00000005484	LSM7	100	92.233	ENSTNIG00000015525	lsm7	100	92.233	Tetraodon_nigroviridis
ENSAMEG00000005484	LSM7	68	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSAMEG00000005484	LSM7	100	100.000	ENSUAMG00000000912	LSM7	86	100.000	Ursus_americanus
ENSAMEG00000005484	LSM7	99	99.020	ENSUMAG00000006556	LSM7	80	99.020	Ursus_maritimus
ENSAMEG00000005484	LSM7	69	100.000	ENSVVUG00000002640	LSM7	65	100.000	Vulpes_vulpes
ENSAMEG00000005484	LSM7	98	94.059	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSAMEG00000005484	LSM7	98	95.050	ENSXCOG00000002572	lsm7	99	95.050	Xiphophorus_couchianus
ENSAMEG00000005484	LSM7	100	95.146	ENSXMAG00000018630	lsm7	100	93.204	Xiphophorus_maculatus