EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMEG00000005557 (Gene tree)
Gene ID: 100478082
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Plus strand
Length: 179281 bases
Position: chrGL192891.1:418328-597608
Accession: 100478082
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000005856	zf-C2H2	PF00096.26	7.4e-27	1	4
ENSAMEP00000005856	zf-C2H2	PF00096.26	7.4e-27	2	4
ENSAMEP00000005856	zf-C2H2	PF00096.26	7.4e-27	3	4
ENSAMEP00000005856	zf-C2H2	PF00096.26	7.4e-27	4	4
ENSAMEP00000005946	zf-C2H2	PF00096.26	1.9e-25	1	4
ENSAMEP00000005946	zf-C2H2	PF00096.26	1.9e-25	2	4
ENSAMEP00000005946	zf-C2H2	PF00096.26	1.9e-25	3	4
ENSAMEP00000005946	zf-C2H2	PF00096.26	1.9e-25	4	4
ENSAMEP00000005856	zf-met	PF12874.7	1.1e-09	1	1
ENSAMEP00000005940	CPSF_A	PF03178.15	3.2e-76	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000006187	CPSF1-202	4143	XM_011228526	ENSAMEP00000005940	1381 (aa)	XP_011226828	G1LGA1
ENSAMET00000006193	CPSF1-203	903	-	ENSAMEP00000005946	301 (aa)	-	G1LGA7
ENSAMET00000006100	CPSF1-201	537	-	ENSAMEP00000005856	179 (aa)	-	G1LG17

Gene Model

Click here to download ENSAMEG00000005557's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000005557's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMEG00000005557	CPSF1	74	38.806	ENSAMEG00000012930	ZNF235	65	38.806
ENSAMEG00000005557	CPSF1	74	39.552	ENSAMEG00000003482	ZNF628	58	39.130
ENSAMEG00000005557	CPSF1	75	41.007	ENSAMEG00000013858	-	94	41.007
ENSAMEG00000005557	CPSF1	75	37.963	ENSAMEG00000020255	ZNF574	54	41.026
ENSAMEG00000005557	CPSF1	85	34.177	ENSAMEG00000007292	ZNF646	99	34.259
ENSAMEG00000005557	CPSF1	83	37.879	ENSAMEG00000000176	ZNF599	65	46.667
ENSAMEG00000005557	CPSF1	80	34.586	ENSAMEG00000017202	ZNF319	73	34.586
ENSAMEG00000005557	CPSF1	85	40.411	ENSAMEG00000014454	-	99	41.045
ENSAMEG00000005557	CPSF1	74	38.060	ENSAMEG00000009560	ZNF582	59	38.060
ENSAMEG00000005557	CPSF1	88	43.548	ENSAMEG00000007611	-	100	41.727
ENSAMEG00000005557	CPSF1	79	56.738	ENSAMEG00000009606	SNAI2	50	59.259
ENSAMEG00000005557	CPSF1	80	32.353	ENSAMEG00000003050	PRDM5	62	33.083
ENSAMEG00000005557	CPSF1	80	46.154	ENSAMEG00000003802	-	97	40.952
ENSAMEG00000005557	CPSF1	79	39.552	ENSAMEG00000012925	ZNF112	53	39.552
ENSAMEG00000005557	CPSF1	75	36.364	ENSAMEG00000002368	-	73	36.364
ENSAMEG00000005557	CPSF1	72	40.789	ENSAMEG00000015824	GTF3A	56	40.789
ENSAMEG00000005557	CPSF1	74	40.594	ENSAMEG00000001261	ZFP1	55	40.594
ENSAMEG00000005557	CPSF1	77	39.552	ENSAMEG00000012006	-	91	39.552
ENSAMEG00000005557	CPSF1	84	45.205	ENSAMEG00000007308	ZNF668	95	37.879
ENSAMEG00000005557	CPSF1	76	42.029	ENSAMEG00000008136	ZNF317	74	39.837

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000005557	CPSF1	100	94.857	ENSG00000071894	CPSF1	97	94.857	Homo_sapiens
ENSAMEG00000005557	CPSF1	99	76.532	ENSAPOG00000019621	cpsf1	99	76.811	Acanthochromis_polyacanthus
ENSAMEG00000005557	CPSF1	99	76.445	ENSACIG00000006112	cpsf1	97	77.016	Amphilophus_citrinellus
ENSAMEG00000005557	CPSF1	99	77.881	ENSAOCG00000007120	cpsf1	97	77.952	Amphiprion_ocellaris
ENSAMEG00000005557	CPSF1	99	78.038	ENSAPEG00000005755	cpsf1	97	78.424	Amphiprion_percula
ENSAMEG00000005557	CPSF1	98	77.080	ENSATEG00000011097	cpsf1	99	76.928	Anabas_testudineus
ENSAMEG00000005557	CPSF1	94	81.706	ENSACAG00000009655	CPSF1	97	81.706	Anolis_carolinensis
ENSAMEG00000005557	CPSF1	100	94.853	ENSANAG00000036514	CPSF1	97	94.853	Aotus_nancymaae
ENSAMEG00000005557	CPSF1	99	77.308	ENSACLG00000012231	cpsf1	99	77.378	Astatotilapia_calliptera
ENSAMEG00000005557	CPSF1	99	72.727	ENSAMXG00000008485	cpsf1	96	73.014	Astyanax_mexicanus
ENSAMEG00000005557	CPSF1	100	93.539	ENSBTAG00000008355	CPSF1	100	93.521	Bos_taurus
ENSAMEG00000005557	CPSF1	99	31.586	WBGene00022301	cpsf-1	100	37.465	Caenorhabditis_elegans
ENSAMEG00000005557	CPSF1	100	94.782	ENSCJAG00000021421	CPSF1	97	94.782	Callithrix_jacchus
ENSAMEG00000005557	CPSF1	100	96.855	ENSCAFG00000001600	CPSF1	100	96.855	Canis_familiaris
ENSAMEG00000005557	CPSF1	100	96.712	ENSCAFG00020020821	CPSF1	97	96.712	Canis_lupus_dingo
ENSAMEG00000005557	CPSF1	100	89.822	ENSCHIG00000015833	CPSF1	97	89.822	Capra_hircus
ENSAMEG00000005557	CPSF1	100	95.282	ENSTSYG00000028560	CPSF1	97	95.282	Carlito_syrichta
ENSAMEG00000005557	CPSF1	99	93.848	ENSCAPG00000014921	CPSF1	99	93.848	Cavia_aperea
ENSAMEG00000005557	CPSF1	100	93.143	ENSCPOG00000011448	CPSF1	97	93.143	Cavia_porcellus
ENSAMEG00000005557	CPSF1	100	94.925	ENSCCAG00000037658	CPSF1	97	94.925	Cebus_capucinus
ENSAMEG00000005557	CPSF1	100	94.853	ENSCATG00000037234	CPSF1	97	94.853	Cercocebus_atys
ENSAMEG00000005557	CPSF1	100	95.068	ENSCLAG00000012166	CPSF1	97	95.068	Chinchilla_lanigera
ENSAMEG00000005557	CPSF1	100	94.782	ENSCSAG00000008502	CPSF1	97	94.782	Chlorocebus_sabaeus
ENSAMEG00000005557	CPSF1	99	86.291	ENSCPBG00000018910	CPSF1	93	86.291	Chrysemys_picta_bellii
ENSAMEG00000005557	CPSF1	94	47.384	ENSCING00000000514	-	94	47.309	Ciona_intestinalis
ENSAMEG00000005557	CPSF1	99	46.742	ENSCSAVG00000002293	-	99	45.845	Ciona_savignyi
ENSAMEG00000005557	CPSF1	99	91.202	ENSCANG00000032760	CPSF1	97	91.202	Colobus_angolensis_palliatus
ENSAMEG00000005557	CPSF1	100	94.282	ENSCGRG00001016344	Cpsf1	97	94.282	Cricetulus_griseus_chok1gshd
ENSAMEG00000005557	CPSF1	100	91.851	ENSCGRG00000003118	Cpsf1	97	91.851	Cricetulus_griseus_crigri
ENSAMEG00000005557	CPSF1	99	76.593	ENSCSEG00000013464	cpsf1	99	76.543	Cynoglossus_semilaevis
ENSAMEG00000005557	CPSF1	88	75.659	ENSCVAG00000014059	cpsf1	100	67.130	Cyprinodon_variegatus
ENSAMEG00000005557	CPSF1	99	78.607	ENSDARG00000034178	cpsf1	97	78.125	Danio_rerio
ENSAMEG00000005557	CPSF1	67	97.101	ENSDNOG00000043654	CPSF1	89	97.101	Dasypus_novemcinctus
ENSAMEG00000005557	CPSF1	99	94.349	ENSDORG00000006278	Cpsf1	99	94.349	Dipodomys_ordii
ENSAMEG00000005557	CPSF1	99	44.765	FBgn0024698	Cpsf160	96	44.616	Drosophila_melanogaster
ENSAMEG00000005557	CPSF1	79	88.565	ENSETEG00000006022	CPSF1	79	88.565	Echinops_telfairi
ENSAMEG00000005557	CPSF1	100	96.855	ENSEASG00005010774	CPSF1	97	96.855	Equus_asinus_asinus
ENSAMEG00000005557	CPSF1	100	96.855	ENSECAG00000022209	CPSF1	97	96.855	Equus_caballus
ENSAMEG00000005557	CPSF1	99	94.809	ENSEEUG00000000471	CPSF1	96	94.809	Erinaceus_europaeus
ENSAMEG00000005557	CPSF1	99	77.353	ENSELUG00000012271	cpsf1	100	77.104	Esox_lucius
ENSAMEG00000005557	CPSF1	100	95.068	ENSFDAG00000016060	CPSF1	97	95.068	Fukomys_damarensis
ENSAMEG00000005557	CPSF1	99	75.852	ENSFHEG00000016801	cpsf1	97	75.923	Fundulus_heteroclitus
ENSAMEG00000005557	CPSF1	99	76.404	ENSGMOG00000000796	cpsf1	97	76.671	Gadus_morhua
ENSAMEG00000005557	CPSF1	95	83.929	ENSGAFG00000018890	cpsf1	96	83.929	Gambusia_affinis
ENSAMEG00000005557	CPSF1	99	77.969	ENSGACG00000008703	cpsf1	97	77.495	Gasterosteus_aculeatus
ENSAMEG00000005557	CPSF1	100	82.349	ENSGAGG00000004276	CPSF1	98	88.087	Gopherus_agassizii
ENSAMEG00000005557	CPSF1	100	94.996	ENSGGOG00000016185	CPSF1	97	94.996	Gorilla_gorilla
ENSAMEG00000005557	CPSF1	99	78.158	ENSHBUG00000018900	cpsf1	97	78.301	Haplochromis_burtoni
ENSAMEG00000005557	CPSF1	99	95.197	ENSHGLG00000016139	CPSF1	97	95.197	Heterocephalus_glaber_female
ENSAMEG00000005557	CPSF1	99	95.125	ENSHGLG00100009750	CPSF1	97	95.125	Heterocephalus_glaber_male
ENSAMEG00000005557	CPSF1	99	75.913	ENSHCOG00000018509	cpsf1	97	76.053	Hippocampus_comes
ENSAMEG00000005557	CPSF1	99	75.608	ENSIPUG00000011259	cpsf1	97	75.230	Ictalurus_punctatus
ENSAMEG00000005557	CPSF1	99	94.868	ENSSTOG00000009957	CPSF1	99	94.868	Ictidomys_tridecemlineatus
ENSAMEG00000005557	CPSF1	100	94.496	ENSJJAG00000023002	Cpsf1	97	94.496	Jaculus_jaculus
ENSAMEG00000005557	CPSF1	90	79.624	ENSKMAG00000001940	cpsf1	96	79.624	Kryptolebias_marmoratus
ENSAMEG00000005557	CPSF1	99	76.034	ENSLBEG00000003601	cpsf1	97	76.343	Labrus_bergylta
ENSAMEG00000005557	CPSF1	87	79.207	ENSLACG00000000233	CPSF1	97	66.879	Latimeria_chalumnae
ENSAMEG00000005557	CPSF1	99	76.546	ENSLOCG00000008484	cpsf1	97	76.830	Lepisosteus_oculatus
ENSAMEG00000005557	CPSF1	99	94.564	ENSLAFG00000022601	CPSF1	100	94.564	Loxodonta_africana
ENSAMEG00000005557	CPSF1	100	94.711	ENSMFAG00000037013	CPSF1	97	94.711	Macaca_fascicularis
ENSAMEG00000005557	CPSF1	100	94.782	ENSMMUG00000007380	CPSF1	97	94.782	Macaca_mulatta
ENSAMEG00000005557	CPSF1	99	94.989	ENSMNEG00000043564	CPSF1	100	94.989	Macaca_nemestrina
ENSAMEG00000005557	CPSF1	100	94.711	ENSMLEG00000043010	CPSF1	97	94.711	Mandrillus_leucophaeus
ENSAMEG00000005557	CPSF1	98	77.456	ENSMAMG00000003803	cpsf1	99	77.159	Mastacembelus_armatus
ENSAMEG00000005557	CPSF1	99	77.201	ENSMZEG00005001168	cpsf1	97	77.201	Maylandia_zebra
ENSAMEG00000005557	CPSF1	100	94.210	ENSMAUG00000003601	Cpsf1	97	94.210	Mesocricetus_auratus
ENSAMEG00000005557	CPSF1	100	95.568	ENSMICG00000015767	CPSF1	97	95.568	Microcebus_murinus
ENSAMEG00000005557	CPSF1	100	94.425	ENSMOCG00000022758	Cpsf1	97	94.425	Microtus_ochrogaster
ENSAMEG00000005557	CPSF1	99	77.738	ENSMMOG00000021245	cpsf1	96	78.152	Mola_mola
ENSAMEG00000005557	CPSF1	100	91.952	ENSMODG00000010755	CPSF1	97	91.952	Monodelphis_domestica
ENSAMEG00000005557	CPSF1	99	76.151	ENSMALG00000020545	cpsf1	97	76.639	Monopterus_albus
ENSAMEG00000005557	CPSF1	100	94.782	MGP_CAROLIEiJ_G0019936	Cpsf1	97	94.782	Mus_caroli
ENSAMEG00000005557	CPSF1	100	94.711	ENSMUSG00000034022	Cpsf1	97	94.711	Mus_musculus
ENSAMEG00000005557	CPSF1	100	94.639	MGP_PahariEiJ_G0019946	Cpsf1	97	94.639	Mus_pahari
ENSAMEG00000005557	CPSF1	100	94.711	MGP_SPRETEiJ_G0020839	Cpsf1	97	94.711	Mus_spretus
ENSAMEG00000005557	CPSF1	96	96.000	ENSMPUG00000006419	CPSF1	93	96.000	Mustela_putorius_furo
ENSAMEG00000005557	CPSF1	100	94.639	ENSNGAG00000022460	Cpsf1	97	94.639	Nannospalax_galili
ENSAMEG00000005557	CPSF1	98	74.476	ENSNBRG00000000813	cpsf1	96	74.476	Neolamprologus_brichardi
ENSAMEG00000005557	CPSF1	85	84.275	ENSNLEG00000010633	-	95	84.275	Nomascus_leucogenys
ENSAMEG00000005557	CPSF1	85	89.020	ENSMEUG00000014922	CPSF1	85	90.000	Notamacropus_eugenii
ENSAMEG00000005557	CPSF1	61	96.939	ENSOPRG00000004693	-	68	96.939	Ochotona_princeps
ENSAMEG00000005557	CPSF1	100	95.211	ENSODEG00000013995	CPSF1	97	95.211	Octodon_degus
ENSAMEG00000005557	CPSF1	99	78.587	ENSONIG00000007676	cpsf1	97	78.658	Oreochromis_niloticus
ENSAMEG00000005557	CPSF1	61	92.857	ENSOANG00000010716	CPSF1	88	92.857	Ornithorhynchus_anatinus
ENSAMEG00000005557	CPSF1	99	76.629	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSAMEG00000005557	CPSF1	99	76.771	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSAMEG00000005557	CPSF1	99	76.787	ENSORLG00015009979	cpsf1	97	76.261	Oryzias_latipes_hsok
ENSAMEG00000005557	CPSF1	99	76.667	ENSOMEG00000011849	cpsf1	97	76.281	Oryzias_melastigma
ENSAMEG00000005557	CPSF1	99	95.412	ENSOGAG00000000315	CPSF1	97	95.412	Otolemur_garnettii
ENSAMEG00000005557	CPSF1	100	95.068	ENSPPAG00000019280	CPSF1	97	95.068	Pan_paniscus
ENSAMEG00000005557	CPSF1	100	93.399	ENSPTRG00000051253	-	97	93.399	Pan_troglodytes
ENSAMEG00000005557	CPSF1	100	95.068	ENSPTRG00000049288	-	97	95.068	Pan_troglodytes
ENSAMEG00000005557	CPSF1	99	94.846	ENSPANG00000015005	CPSF1	100	94.846	Papio_anubis
ENSAMEG00000005557	CPSF1	99	79.957	ENSPKIG00000002582	cpsf1	100	79.606	Paramormyrops_kingsleyae
ENSAMEG00000005557	CPSF1	100	91.880	ENSPCIG00000009035	CPSF1	97	91.880	Phascolarctos_cinereus
ENSAMEG00000005557	CPSF1	99	75.453	ENSPFOG00000012870	cpsf1	97	75.593	Poecilia_formosa
ENSAMEG00000005557	CPSF1	99	75.411	ENSPREG00000016307	cpsf1	97	75.401	Poecilia_reticulata
ENSAMEG00000005557	CPSF1	100	86.633	ENSPPYG00000018973	CPSF1	97	86.633	Pongo_abelii
ENSAMEG00000005557	CPSF1	94	89.419	ENSPCAG00000011541	CPSF1	94	89.419	Procavia_capensis
ENSAMEG00000005557	CPSF1	100	93.863	ENSPCOG00000020001	CPSF1	97	93.863	Propithecus_coquereli
ENSAMEG00000005557	CPSF1	90	92.857	ENSPVAG00000006761	CPSF1	88	92.857	Pteropus_vampyrus
ENSAMEG00000005557	CPSF1	99	77.449	ENSPNYG00000004906	cpsf1	99	77.519	Pundamilia_nyererei
ENSAMEG00000005557	CPSF1	99	76.343	ENSPNAG00000024395	cpsf1	96	76.343	Pygocentrus_nattereri
ENSAMEG00000005557	CPSF1	100	94.782	ENSRNOG00000030705	Cpsf1	97	94.782	Rattus_norvegicus
ENSAMEG00000005557	CPSF1	100	94.782	ENSRBIG00000044907	CPSF1	97	94.782	Rhinopithecus_bieti
ENSAMEG00000005557	CPSF1	100	94.711	ENSRROG00000044861	CPSF1	97	94.711	Rhinopithecus_roxellana
ENSAMEG00000005557	CPSF1	99	95.061	ENSSBOG00000027177	CPSF1	100	95.061	Saimiri_boliviensis_boliviensis
ENSAMEG00000005557	CPSF1	100	91.809	ENSSHAG00000006500	CPSF1	97	91.809	Sarcophilus_harrisii
ENSAMEG00000005557	CPSF1	99	77.986	ENSSFOG00015004606	cpsf1	100	79.927	Scleropages_formosus
ENSAMEG00000005557	CPSF1	99	76.918	ENSSMAG00000020547	cpsf1	97	77.057	Scophthalmus_maximus
ENSAMEG00000005557	CPSF1	99	78.386	ENSSDUG00000001100	cpsf1	96	78.674	Seriola_dumerili
ENSAMEG00000005557	CPSF1	99	78.587	ENSSLDG00000003619	cpsf1	96	78.875	Seriola_lalandi_dorsalis
ENSAMEG00000005557	CPSF1	88	92.078	ENSSARG00000003643	CPSF1	88	92.078	Sorex_araneus
ENSAMEG00000005557	CPSF1	99	86.821	ENSSPUG00000014396	CPSF1	99	86.821	Sphenodon_punctatus
ENSAMEG00000005557	CPSF1	99	76.446	ENSSPAG00000005349	cpsf1	97	76.864	Stegastes_partitus
ENSAMEG00000005557	CPSF1	100	95.139	ENSSSCG00000005906	CPSF1	97	95.139	Sus_scrofa
ENSAMEG00000005557	CPSF1	99	76.524	ENSTRUG00000013134	cpsf1	99	76.734	Takifugu_rubripes
ENSAMEG00000005557	CPSF1	99	77.534	ENSTNIG00000014027	cpsf1	97	77.605	Tetraodon_nigroviridis
ENSAMEG00000005557	CPSF1	78	93.866	ENSTBEG00000001756	CPSF1	90	93.866	Tupaia_belangeri
ENSAMEG00000005557	CPSF1	89	93.955	ENSTTRG00000001937	CPSF1	87	93.955	Tursiops_truncatus
ENSAMEG00000005557	CPSF1	100	97.856	ENSUAMG00000006476	CPSF1	98	97.856	Ursus_americanus
ENSAMEG00000005557	CPSF1	99	77.217	ENSXCOG00000003608	cpsf1	96	77.433	Xiphophorus_couchianus
ENSAMEG00000005557	CPSF1	99	76.602	ENSXMAG00000005798	cpsf1	96	76.818	Xiphophorus_maculatus