EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMEG00000007632 (Gene tree)
Gene ID: 100480996
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Plus strand
Length: 225023 bases
Position: chrGL192573.1:660609-885631
Accession: 100480996
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000008058	EST1	PF10374.9	2.3e-15	1	1
ENSAMEP00000008058	EST1_DNA_bind	PF10373.9	1.5e-60	1	1
ENSAMEP00000008058	PIN_4	PF13638.6	1.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000008392	SMG6-201	4242	XM_002918028	ENSAMEP00000008058	1414 (aa)	XP_002918074	G1LM72

Gene Model

Click here to download ENSAMEG00000007632's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000007632's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000007632	SMG6	100	92.882	ENSG00000070366	SMG6	100	97.260	Homo_sapiens
ENSAMEG00000007632	SMG6	83	54.902	ENSAPOG00000019448	smg6	74	55.105	Acanthochromis_polyacanthus
ENSAMEG00000007632	SMG6	72	60.536	ENSACIG00000012997	smg6	78	55.299	Amphilophus_citrinellus
ENSAMEG00000007632	SMG6	83	54.882	ENSAOCG00000002630	smg6	74	55.156	Amphiprion_ocellaris
ENSAMEG00000007632	SMG6	83	55.039	ENSAPEG00000019101	smg6	74	55.234	Amphiprion_percula
ENSAMEG00000007632	SMG6	83	55.286	ENSATEG00000006483	smg6	73	55.418	Anabas_testudineus
ENSAMEG00000007632	SMG6	87	56.974	ENSACAG00000011783	SMG6	99	58.044	Anolis_carolinensis
ENSAMEG00000007632	SMG6	100	93.164	ENSANAG00000035760	SMG6	100	93.164	Aotus_nancymaae
ENSAMEG00000007632	SMG6	71	59.355	ENSACLG00000005288	smg6	80	55.389	Astatotilapia_calliptera
ENSAMEG00000007632	SMG6	69	63.169	ENSAMXG00000017326	smg6	98	51.059	Astyanax_mexicanus
ENSAMEG00000007632	SMG6	100	94.915	ENSBTAG00000000267	SMG6	100	94.915	Bos_taurus
ENSAMEG00000007632	SMG6	100	93.159	ENSCJAG00000001820	SMG6	100	93.159	Callithrix_jacchus
ENSAMEG00000007632	SMG6	100	96.822	ENSCAFG00000019260	SMG6	100	96.822	Canis_familiaris
ENSAMEG00000007632	SMG6	100	96.822	ENSCAFG00020009770	SMG6	100	96.822	Canis_lupus_dingo
ENSAMEG00000007632	SMG6	100	94.492	ENSCHIG00000021998	SMG6	100	94.492	Capra_hircus
ENSAMEG00000007632	SMG6	100	93.164	ENSTSYG00000003406	SMG6	100	97.456	Carlito_syrichta
ENSAMEG00000007632	SMG6	98	77.266	ENSCAPG00000016197	SMG6	99	83.138	Cavia_aperea
ENSAMEG00000007632	SMG6	100	90.634	ENSCPOG00000014878	SMG6	100	90.634	Cavia_porcellus
ENSAMEG00000007632	SMG6	100	93.305	ENSCCAG00000035801	SMG6	100	93.305	Cebus_capucinus
ENSAMEG00000007632	SMG6	100	93.094	ENSCATG00000031956	SMG6	100	93.094	Cercocebus_atys
ENSAMEG00000007632	SMG6	100	92.459	ENSCLAG00000006748	SMG6	100	92.459	Chinchilla_lanigera
ENSAMEG00000007632	SMG6	100	93.446	ENSCSAG00000013800	SMG6	100	93.446	Chlorocebus_sabaeus
ENSAMEG00000007632	SMG6	57	95.522	ENSCHOG00000005024	-	73	95.522	Choloepus_hoffmanni
ENSAMEG00000007632	SMG6	100	72.639	ENSCPBG00000020369	SMG6	100	73.194	Chrysemys_picta_bellii
ENSAMEG00000007632	SMG6	98	93.089	ENSCANG00000031764	SMG6	100	96.869	Colobus_angolensis_palliatus
ENSAMEG00000007632	SMG6	55	88.235	ENSCGRG00001019595	Smg6	100	88.235	Cricetulus_griseus_chok1gshd
ENSAMEG00000007632	SMG6	98	85.086	ENSCGRG00000007782	Smg6	100	85.231	Cricetulus_griseus_crigri
ENSAMEG00000007632	SMG6	98	53.203	ENSCSEG00000012757	smg6	89	53.153	Cynoglossus_semilaevis
ENSAMEG00000007632	SMG6	72	57.647	ENSCVAG00000012789	smg6	74	53.961	Cyprinodon_variegatus
ENSAMEG00000007632	SMG6	100	50.803	ENSDARG00000100481	smg6	100	51.415	Danio_rerio
ENSAMEG00000007632	SMG6	100	93.446	ENSDNOG00000048283	SMG6	100	93.446	Dasypus_novemcinctus
ENSAMEG00000007632	SMG6	100	89.053	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
ENSAMEG00000007632	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSAMEG00000007632	SMG6	74	50.000	ENSEBUG00000005059	smg6	71	49.662	Eptatretus_burgeri
ENSAMEG00000007632	SMG6	99	95.898	ENSEASG00005009318	SMG6	99	95.898	Equus_asinus_asinus
ENSAMEG00000007632	SMG6	99	95.615	ENSECAG00000006519	SMG6	99	95.615	Equus_caballus
ENSAMEG00000007632	SMG6	100	83.310	ENSEEUG00000003493	SMG6	100	83.310	Erinaceus_europaeus
ENSAMEG00000007632	SMG6	72	60.463	ENSELUG00000005934	smg6	67	56.703	Esox_lucius
ENSAMEG00000007632	SMG6	100	97.246	ENSFCAG00000028817	SMG6	100	97.246	Felis_catus
ENSAMEG00000007632	SMG6	98	72.669	ENSFALG00000006538	SMG6	100	72.740	Ficedula_albicollis
ENSAMEG00000007632	SMG6	100	92.178	ENSFDAG00000015106	SMG6	100	92.178	Fukomys_damarensis
ENSAMEG00000007632	SMG6	83	53.079	ENSFHEG00000013282	smg6	75	53.474	Fundulus_heteroclitus
ENSAMEG00000007632	SMG6	53	69.159	ENSGMOG00000019077	smg6	58	69.159	Gadus_morhua
ENSAMEG00000007632	SMG6	100	72.042	ENSGALG00000003108	SMG6	98	72.091	Gallus_gallus
ENSAMEG00000007632	SMG6	83	53.840	ENSGAFG00000000379	smg6	74	54.082	Gambusia_affinis
ENSAMEG00000007632	SMG6	91	53.984	ENSGACG00000020521	smg6	99	53.909	Gasterosteus_aculeatus
ENSAMEG00000007632	SMG6	98	72.424	ENSGAGG00000025617	SMG6	100	72.992	Gopherus_agassizii
ENSAMEG00000007632	SMG6	100	93.728	ENSGGOG00000017156	SMG6	100	93.728	Gorilla_gorilla
ENSAMEG00000007632	SMG6	72	59.447	ENSHBUG00000021311	smg6	74	55.267	Haplochromis_burtoni
ENSAMEG00000007632	SMG6	100	91.696	ENSHGLG00000012882	SMG6	100	91.696	Heterocephalus_glaber_female
ENSAMEG00000007632	SMG6	100	91.766	ENSHGLG00100017815	SMG6	100	91.766	Heterocephalus_glaber_male
ENSAMEG00000007632	SMG6	72	58.969	ENSHCOG00000008761	smg6	97	53.615	Hippocampus_comes
ENSAMEG00000007632	SMG6	85	54.376	ENSIPUG00000012493	smg6	76	54.202	Ictalurus_punctatus
ENSAMEG00000007632	SMG6	100	93.939	ENSSTOG00000028127	SMG6	100	93.939	Ictidomys_tridecemlineatus
ENSAMEG00000007632	SMG6	79	88.839	ENSJJAG00000015367	Smg6	95	86.904	Jaculus_jaculus
ENSAMEG00000007632	SMG6	74	58.703	ENSKMAG00000000279	smg6	79	52.632	Kryptolebias_marmoratus
ENSAMEG00000007632	SMG6	55	58.240	ENSLACG00000000806	-	98	59.356	Latimeria_chalumnae
ENSAMEG00000007632	SMG6	73	65.388	ENSLOCG00000006448	smg6	99	55.096	Lepisosteus_oculatus
ENSAMEG00000007632	SMG6	100	93.023	ENSLAFG00000001261	SMG6	100	93.023	Loxodonta_africana
ENSAMEG00000007632	SMG6	100	93.587	ENSMFAG00000003394	SMG6	100	93.587	Macaca_fascicularis
ENSAMEG00000007632	SMG6	100	93.517	ENSMMUG00000023161	SMG6	100	93.517	Macaca_mulatta
ENSAMEG00000007632	SMG6	100	88.686	ENSMNEG00000044592	SMG6	100	88.686	Macaca_nemestrina
ENSAMEG00000007632	SMG6	93	96.992	ENSMLEG00000029353	SMG6	100	96.992	Mandrillus_leucophaeus
ENSAMEG00000007632	SMG6	83	55.972	ENSMAMG00000020119	smg6	98	49.679	Mastacembelus_armatus
ENSAMEG00000007632	SMG6	71	59.410	ENSMZEG00005024736	smg6	74	54.996	Maylandia_zebra
ENSAMEG00000007632	SMG6	73	66.572	ENSMGAG00000005401	-	99	66.383	Meleagris_gallopavo
ENSAMEG00000007632	SMG6	100	94.856	ENSMICG00000012913	SMG6	100	94.856	Microcebus_murinus
ENSAMEG00000007632	SMG6	100	47.702	ENSMMOG00000010883	smg6	100	48.284	Mola_mola
ENSAMEG00000007632	SMG6	100	86.428	ENSMODG00000010622	SMG6	100	86.428	Monodelphis_domestica
ENSAMEG00000007632	SMG6	83	54.844	ENSMALG00000001106	smg6	73	55.417	Monopterus_albus
ENSAMEG00000007632	SMG6	100	91.543	MGP_CAROLIEiJ_G0016729	Smg6	100	91.543	Mus_caroli
ENSAMEG00000007632	SMG6	100	91.191	ENSMUSG00000038290	Smg6	100	91.191	Mus_musculus
ENSAMEG00000007632	SMG6	100	91.114	MGP_PahariEiJ_G0017866	Smg6	100	91.114	Mus_pahari
ENSAMEG00000007632	SMG6	100	91.121	MGP_SPRETEiJ_G0017572	Smg6	100	91.121	Mus_spretus
ENSAMEG00000007632	SMG6	100	97.246	ENSMPUG00000013046	SMG6	100	97.246	Mustela_putorius_furo
ENSAMEG00000007632	SMG6	100	94.562	ENSMLUG00000005739	SMG6	100	94.562	Myotis_lucifugus
ENSAMEG00000007632	SMG6	98	90.922	ENSNGAG00000007287	Smg6	100	90.922	Nannospalax_galili
ENSAMEG00000007632	SMG6	83	53.720	ENSNBRG00000009511	smg6	81	54.560	Neolamprologus_brichardi
ENSAMEG00000007632	SMG6	98	93.329	ENSNLEG00000017171	SMG6	100	97.456	Nomascus_leucogenys
ENSAMEG00000007632	SMG6	98	82.471	ENSMEUG00000015804	SMG6	100	82.471	Notamacropus_eugenii
ENSAMEG00000007632	SMG6	62	91.855	ENSOPRG00000000579	SMG6	85	97.895	Ochotona_princeps
ENSAMEG00000007632	SMG6	100	85.644	ENSODEG00000008038	SMG6	100	85.644	Octodon_degus
ENSAMEG00000007632	SMG6	100	50.596	ENSONIG00000005594	smg6	100	51.427	Oreochromis_niloticus
ENSAMEG00000007632	SMG6	100	92.752	ENSOCUG00000013018	SMG6	100	92.892	Oryctolagus_cuniculus
ENSAMEG00000007632	SMG6	94	54.216	ENSORLG00000003317	smg6	85	54.867	Oryzias_latipes
ENSAMEG00000007632	SMG6	94	54.423	ENSORLG00020015343	smg6	85	54.681	Oryzias_latipes_hni
ENSAMEG00000007632	SMG6	94	54.295	ENSORLG00015020454	smg6	85	54.945	Oryzias_latipes_hsok
ENSAMEG00000007632	SMG6	83	53.459	ENSOMEG00000010838	smg6	75	53.810	Oryzias_melastigma
ENSAMEG00000007632	SMG6	100	93.873	ENSOGAG00000004483	SMG6	100	93.873	Otolemur_garnettii
ENSAMEG00000007632	SMG6	100	93.155	ENSOARG00000015076	SMG6	100	94.645	Ovis_aries
ENSAMEG00000007632	SMG6	100	93.587	ENSPPAG00000043296	SMG6	100	93.587	Pan_paniscus
ENSAMEG00000007632	SMG6	100	97.316	ENSPPRG00000014581	SMG6	100	97.316	Panthera_pardus
ENSAMEG00000007632	SMG6	98	97.469	ENSPTIG00000008925	SMG6	100	99.217	Panthera_tigris_altaica
ENSAMEG00000007632	SMG6	100	93.517	ENSPTRG00000008544	SMG6	100	97.260	Pan_troglodytes
ENSAMEG00000007632	SMG6	100	93.376	ENSPANG00000024588	SMG6	100	93.376	Papio_anubis
ENSAMEG00000007632	SMG6	89	70.948	ENSPSIG00000006660	SMG6	96	71.026	Pelodiscus_sinensis
ENSAMEG00000007632	SMG6	98	60.614	ENSPMGG00000000844	smg6	100	60.614	Periophthalmus_magnuspinnatus
ENSAMEG00000007632	SMG6	100	92.319	ENSPEMG00000020707	Smg6	100	92.319	Peromyscus_maniculatus_bairdii
ENSAMEG00000007632	SMG6	100	51.000	ENSPFOG00000012035	smg6	100	51.444	Poecilia_formosa
ENSAMEG00000007632	SMG6	77	56.213	ENSPLAG00000017660	smg6	74	54.186	Poecilia_latipinna
ENSAMEG00000007632	SMG6	77	56.239	ENSPMEG00000000258	smg6	74	54.545	Poecilia_mexicana
ENSAMEG00000007632	SMG6	83	54.046	ENSPREG00000010066	smg6	74	54.003	Poecilia_reticulata
ENSAMEG00000007632	SMG6	100	88.397	ENSPPYG00000007790	SMG6	100	88.397	Pongo_abelii
ENSAMEG00000007632	SMG6	100	88.865	ENSPCAG00000000552	SMG6	100	88.865	Procavia_capensis
ENSAMEG00000007632	SMG6	100	94.433	ENSPCOG00000020925	SMG6	100	94.433	Propithecus_coquereli
ENSAMEG00000007632	SMG6	86	96.552	ENSPVAG00000002159	SMG6	86	96.552	Pteropus_vampyrus
ENSAMEG00000007632	SMG6	71	61.745	ENSPNYG00000024151	smg6	79	56.946	Pundamilia_nyererei
ENSAMEG00000007632	SMG6	98	52.083	ENSPNAG00000015480	smg6	88	63.016	Pygocentrus_nattereri
ENSAMEG00000007632	SMG6	100	91.614	ENSRNOG00000003041	Smg6	100	91.614	Rattus_norvegicus
ENSAMEG00000007632	SMG6	100	93.164	ENSRBIG00000024746	SMG6	100	93.164	Rhinopithecus_bieti
ENSAMEG00000007632	SMG6	100	93.235	ENSRROG00000030423	SMG6	100	96.477	Rhinopithecus_roxellana
ENSAMEG00000007632	SMG6	100	93.164	ENSSBOG00000022518	SMG6	100	91.473	Saimiri_boliviensis_boliviensis
ENSAMEG00000007632	SMG6	98	85.930	ENSSHAG00000010045	SMG6	98	85.930	Sarcophilus_harrisii
ENSAMEG00000007632	SMG6	72	62.095	ENSSFOG00015005436	smg6	70	57.604	Scleropages_formosus
ENSAMEG00000007632	SMG6	83	55.409	ENSSMAG00000019777	smg6	73	54.957	Scophthalmus_maximus
ENSAMEG00000007632	SMG6	89	52.984	ENSSDUG00000016412	smg6	80	53.001	Seriola_dumerili
ENSAMEG00000007632	SMG6	86	52.105	ENSSLDG00000020747	smg6	83	52.057	Seriola_lalandi_dorsalis
ENSAMEG00000007632	SMG6	99	70.531	ENSSPUG00000007152	SMG6	99	70.601	Sphenodon_punctatus
ENSAMEG00000007632	SMG6	72	59.016	ENSSPAG00000015633	smg6	74	54.758	Stegastes_partitus
ENSAMEG00000007632	SMG6	100	94.848	ENSSSCG00000017826	SMG6	100	94.848	Sus_scrofa
ENSAMEG00000007632	SMG6	100	72.734	ENSTGUG00000005836	SMG6	100	72.874	Taeniopygia_guttata
ENSAMEG00000007632	SMG6	83	54.834	ENSTRUG00000000358	smg6	81	55.128	Takifugu_rubripes
ENSAMEG00000007632	SMG6	100	49.934	ENSTNIG00000016164	smg6	100	50.000	Tetraodon_nigroviridis
ENSAMEG00000007632	SMG6	100	89.006	ENSTBEG00000011424	SMG6	100	89.006	Tupaia_belangeri
ENSAMEG00000007632	SMG6	91	92.576	ENSTTRG00000001175	SMG6	91	92.576	Tursiops_truncatus
ENSAMEG00000007632	SMG6	100	98.659	ENSUAMG00000025152	SMG6	100	98.843	Ursus_americanus
ENSAMEG00000007632	SMG6	98	99.130	ENSUMAG00000009306	SMG6	100	99.130	Ursus_maritimus
ENSAMEG00000007632	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSAMEG00000007632	SMG6	100	96.540	ENSVVUG00000021727	SMG6	100	96.540	Vulpes_vulpes
ENSAMEG00000007632	SMG6	98	59.393	ENSXETG00000023799	SMG6	99	59.110	Xenopus_tropicalis
ENSAMEG00000007632	SMG6	83	54.360	ENSXMAG00000010321	smg6	74	54.396	Xiphophorus_maculatus