EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMEG00000009393 (Gene tree)
Gene ID: 100480291
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Plus strand
Length: 22628 bases
Position: chrGL194616.1:70431-93058
Accession: 2428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000009907	CSD	PF00313.22	1e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000010339	YBX3-201	1053	-	ENSAMEP00000009907	350 (aa)	-	G1LS69

Gene Model

Click here to download ENSAMEG00000009393's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000009393's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMEG00000009393	YBX3	91	48.235	ENSAMEG00000000494	-	88	56.164

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000009393	YBX3	95	90.000	ENSG00000060138	YBX3	91	96.429	Homo_sapiens
ENSAMEG00000009393	YBX3	81	70.175	ENSAPLG00000003147	YBX3	100	70.175	Anas_platyrhynchos
ENSAMEG00000009393	YBX3	94	90.179	ENSANAG00000024492	-	92	92.759	Aotus_nancymaae
ENSAMEG00000009393	YBX3	82	83.846	ENSANAG00000033366	-	86	82.308	Aotus_nancymaae
ENSAMEG00000009393	YBX3	90	92.163	ENSBTAG00000009663	YBX3	92	84.857	Bos_taurus
ENSAMEG00000009393	YBX3	73	91.139	ENSCJAG00000033824	-	92	90.411	Callithrix_jacchus
ENSAMEG00000009393	YBX3	95	89.118	ENSCJAG00000021660	-	97	84.916	Callithrix_jacchus
ENSAMEG00000009393	YBX3	82	97.552	ENSCAFG00000013401	YBX3	84	97.736	Canis_familiaris
ENSAMEG00000009393	YBX3	95	92.582	ENSCAFG00020006412	YBX3	95	89.802	Canis_lupus_dingo
ENSAMEG00000009393	YBX3	90	92.163	ENSCHIG00000010863	YBX3	96	88.047	Capra_hircus
ENSAMEG00000009393	YBX3	97	56.891	ENSTSYG00000035821	-	92	52.000	Carlito_syrichta
ENSAMEG00000009393	YBX3	81	94.077	ENSTSYG00000004204	-	96	82.336	Carlito_syrichta
ENSAMEG00000009393	YBX3	81	90.559	ENSCAPG00000015039	YBX3	93	90.559	Cavia_aperea
ENSAMEG00000009393	YBX3	83	91.379	ENSCPOG00000011329	YBX3	85	91.349	Cavia_porcellus
ENSAMEG00000009393	YBX3	95	89.412	ENSCCAG00000016469	YBX3	96	84.916	Cebus_capucinus
ENSAMEG00000009393	YBX3	95	89.118	ENSCATG00000034411	YBX3	96	85.196	Cercocebus_atys
ENSAMEG00000009393	YBX3	81	91.259	ENSCLAG00000016030	YBX3	94	91.259	Chinchilla_lanigera
ENSAMEG00000009393	YBX3	95	89.706	ENSCSAG00000008744	YBX3	96	85.196	Chlorocebus_sabaeus
ENSAMEG00000009393	YBX3	83	81.034	ENSCPBG00000014147	YBX3	81	81.315	Chrysemys_picta_bellii
ENSAMEG00000009393	YBX3	83	92.177	ENSCANG00000036801	YBX3	92	93.103	Colobus_angolensis_palliatus
ENSAMEG00000009393	YBX3	89	91.346	ENSCGRG00001016148	Ybx3	96	85.795	Cricetulus_griseus_chok1gshd
ENSAMEG00000009393	YBX3	81	92.440	ENSCGRG00000004563	Ybx3	98	92.440	Cricetulus_griseus_crigri
ENSAMEG00000009393	YBX3	98	83.526	ENSDORG00000009103	Ybx3	81	94.406	Dipodomys_ordii
ENSAMEG00000009393	YBX3	81	84.615	ENSETEG00000002557	YBX3	99	82.746	Echinops_telfairi
ENSAMEG00000009393	YBX3	95	89.318	ENSEASG00005014726	YBX3	90	96.226	Equus_asinus_asinus
ENSAMEG00000009393	YBX3	95	92.582	ENSECAG00000013777	YBX3	96	90.368	Equus_caballus
ENSAMEG00000009393	YBX3	81	92.254	ENSEEUG00000010415	YBX3	100	92.606	Erinaceus_europaeus
ENSAMEG00000009393	YBX3	95	93.787	ENSFCAG00000027748	YBX3	96	91.011	Felis_catus
ENSAMEG00000009393	YBX3	81	65.854	ENSFALG00000003661	YBX3	100	63.194	Ficedula_albicollis
ENSAMEG00000009393	YBX3	81	87.986	ENSFDAG00000021192	YBX3	92	87.413	Fukomys_damarensis
ENSAMEG00000009393	YBX3	82	62.021	ENSGALG00000031890	YBX3	93	56.980	Gallus_gallus
ENSAMEG00000009393	YBX3	82	80.277	ENSGAGG00000017780	YBX3	81	80.277	Gopherus_agassizii
ENSAMEG00000009393	YBX3	95	90.000	ENSGGOG00000001352	YBX3	96	85.475	Gorilla_gorilla
ENSAMEG00000009393	YBX3	77	81.111	ENSHGLG00000015495	-	95	71.513	Heterocephalus_glaber_female
ENSAMEG00000009393	YBX3	87	76.623	ENSHGLG00000014798	-	85	79.522	Heterocephalus_glaber_female
ENSAMEG00000009393	YBX3	57	97.727	ENSHGLG00100003589	YBX3	87	65.035	Heterocephalus_glaber_male
ENSAMEG00000009393	YBX3	95	88.589	ENSSTOG00000032577	-	96	85.380	Ictidomys_tridecemlineatus
ENSAMEG00000009393	YBX3	81	88.811	ENSSTOG00000002108	-	88	88.811	Ictidomys_tridecemlineatus
ENSAMEG00000009393	YBX3	83	69.863	ENSJJAG00000014239	Ybx3	93	85.542	Jaculus_jaculus
ENSAMEG00000009393	YBX3	95	93.195	ENSLAFG00000017247	YBX3	97	88.483	Loxodonta_africana
ENSAMEG00000009393	YBX3	95	89.412	ENSMFAG00000039369	YBX3	96	85.475	Macaca_fascicularis
ENSAMEG00000009393	YBX3	91	89.538	ENSMMUG00000022469	YBX3	99	88.474	Macaca_mulatta
ENSAMEG00000009393	YBX3	95	89.118	ENSMNEG00000045109	YBX3	96	85.196	Macaca_nemestrina
ENSAMEG00000009393	YBX3	100	82.906	ENSMLEG00000033618	YBX3	94	82.436	Mandrillus_leucophaeus
ENSAMEG00000009393	YBX3	81	67.832	ENSMGAG00000014224	YBX3	100	66.783	Meleagris_gallopavo
ENSAMEG00000009393	YBX3	91	90.654	ENSMAUG00000012185	Ybx3	98	89.557	Mesocricetus_auratus
ENSAMEG00000009393	YBX3	83	97.241	ENSMICG00000038002	-	96	90.169	Microcebus_murinus
ENSAMEG00000009393	YBX3	84	83.146	ENSMICG00000031459	-	86	82.857	Microcebus_murinus
ENSAMEG00000009393	YBX3	86	92.053	ENSMOCG00000016291	Ybx3	94	94.118	Microtus_ochrogaster
ENSAMEG00000009393	YBX3	81	85.664	ENSMODG00000018248	YBX3	91	85.366	Monodelphis_domestica
ENSAMEG00000009393	YBX3	89	90.385	MGP_CAROLIEiJ_G0028947	Ybx3	96	85.227	Mus_caroli
ENSAMEG00000009393	YBX3	89	90.385	ENSMUSG00000030189	Ybx3	96	85.227	Mus_musculus
ENSAMEG00000009393	YBX3	89	91.026	MGP_PahariEiJ_G0022709	Ybx3	96	85.795	Mus_pahari
ENSAMEG00000009393	YBX3	89	90.705	MGP_SPRETEiJ_G0029994	Ybx3	96	85.511	Mus_spretus
ENSAMEG00000009393	YBX3	95	80.636	ENSMPUG00000011810	YBX3	96	77.473	Mustela_putorius_furo
ENSAMEG00000009393	YBX3	75	95.522	ENSMLUG00000007476	YBX3	100	95.522	Myotis_lucifugus
ENSAMEG00000009393	YBX3	80	88.028	ENSNGAG00000000710	Ybx3	62	88.028	Nannospalax_galili
ENSAMEG00000009393	YBX3	89	88.162	ENSNLEG00000034844	YBX3	91	86.916	Nomascus_leucogenys
ENSAMEG00000009393	YBX3	89	85.266	ENSODEG00000017957	YBX3	94	84.953	Octodon_degus
ENSAMEG00000009393	YBX3	83	90.345	ENSOCUG00000001889	YBX3	84	90.311	Oryctolagus_cuniculus
ENSAMEG00000009393	YBX3	95	90.725	ENSOGAG00000013245	YBX3	96	87.052	Otolemur_garnettii
ENSAMEG00000009393	YBX3	83	85.034	ENSOARG00000020919	YBX3	98	85.517	Ovis_aries
ENSAMEG00000009393	YBX3	83	92.440	ENSPPAG00000039068	YBX3	81	92.759	Pan_paniscus
ENSAMEG00000009393	YBX3	95	94.083	ENSPPRG00000005859	YBX3	96	91.292	Panthera_pardus
ENSAMEG00000009393	YBX3	81	97.895	ENSPTIG00000005322	YBX3	81	97.895	Panthera_tigris_altaica
ENSAMEG00000009393	YBX3	95	90.000	ENSPTRG00000004681	YBX3	96	85.475	Pan_troglodytes
ENSAMEG00000009393	YBX3	95	89.118	ENSPANG00000010280	YBX3	96	85.196	Papio_anubis
ENSAMEG00000009393	YBX3	55	100.000	ENSPSIG00000009247	YBX3	90	100.000	Pelodiscus_sinensis
ENSAMEG00000009393	YBX3	64	92.035	ENSPEMG00000010391	-	83	69.097	Peromyscus_maniculatus_bairdii
ENSAMEG00000009393	YBX3	90	91.509	ENSPEMG00000012132	-	99	90.506	Peromyscus_maniculatus_bairdii
ENSAMEG00000009393	YBX3	73	82.946	ENSPCIG00000029949	YBX3	100	82.946	Phascolarctos_cinereus
ENSAMEG00000009393	YBX3	95	89.706	ENSPPYG00000004279	YBX3	96	85.196	Pongo_abelii
ENSAMEG00000009393	YBX3	61	93.458	ENSPCAG00000001397	YBX3	93	83.026	Procavia_capensis
ENSAMEG00000009393	YBX3	52	90.110	ENSPCOG00000011663	YBX3	95	81.224	Propithecus_coquereli
ENSAMEG00000009393	YBX3	89	78.797	ENSPVAG00000006740	YBX3	72	89.552	Pteropus_vampyrus
ENSAMEG00000009393	YBX3	89	91.667	ENSRNOG00000005480	Ybx3	96	86.080	Rattus_norvegicus
ENSAMEG00000009393	YBX3	95	89.412	ENSRBIG00000039208	YBX3	92	88.235	Rhinopithecus_bieti
ENSAMEG00000009393	YBX3	95	89.706	ENSRROG00000029638	YBX3	92	88.235	Rhinopithecus_roxellana
ENSAMEG00000009393	YBX3	99	81.356	ENSSBOG00000030573	YBX3	83	94.056	Saimiri_boliviensis_boliviensis
ENSAMEG00000009393	YBX3	81	81.100	ENSSHAG00000003262	YBX3	98	81.443	Sarcophilus_harrisii
ENSAMEG00000009393	YBX3	100	90.808	ENSSSCG00000000633	YBX3	94	90.808	Sus_scrofa
ENSAMEG00000009393	YBX3	81	68.421	ENSTGUG00000012047	YBX3	100	67.719	Taeniopygia_guttata
ENSAMEG00000009393	YBX3	97	83.191	ENSTBEG00000012570	YBX3	92	84.570	Tupaia_belangeri
ENSAMEG00000009393	YBX3	75	85.714	ENSTTRG00000008045	YBX3	100	86.090	Tursiops_truncatus
ENSAMEG00000009393	YBX3	79	96.377	ENSUAMG00000016662	YBX3	100	96.377	Ursus_americanus
ENSAMEG00000009393	YBX3	81	99.298	ENSUMAG00000016118	YBX3	94	99.298	Ursus_maritimus
ENSAMEG00000009393	YBX3	81	69.792	ENSVPAG00000000876	YBX3	100	70.671	Vicugna_pacos
ENSAMEG00000009393	YBX3	79	93.841	ENSVVUG00000004956	YBX3	100	93.841	Vulpes_vulpes
ENSAMEG00000009393	YBX3	56	92.222	ENSXETG00000016239	ybx3	91	53.618	Xenopus_tropicalis