EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMEG00000011162 (Gene tree)
Gene ID: 100477624
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Minus strand
Length: 7252 bases
Position: chrGL192348.1:1593291-1600542
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000011741	LSM	PF01423.22	7.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000012239	LSM4-201	438	-	ENSAMEP00000011741	146 (aa)	-	G1LXD8

Gene Model

Click here to download ENSAMEG00000011162's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml03018	RNA degradation	KEGG
aml03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000011162's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMEG00000011162	LSM4	66	31.313	ENSAMEG00000006483	LSM2	82	34.177

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000011162	LSM4	95	100.000	ENSG00000130520	LSM4	100	100.000	Homo_sapiens
ENSAMEG00000011162	LSM4	67	96.939	ENSAPOG00000005643	lsm4	58	98.851	Acanthochromis_polyacanthus
ENSAMEG00000011162	LSM4	93	77.465	ENSAOCG00000006414	lsm4	59	98.851	Amphiprion_ocellaris
ENSAMEG00000011162	LSM4	67	96.939	ENSAPEG00000006238	lsm4	58	98.851	Amphiprion_percula
ENSAMEG00000011162	LSM4	67	96.939	ENSATEG00000016559	lsm4	57	98.851	Anabas_testudineus
ENSAMEG00000011162	LSM4	95	100.000	ENSANAG00000034659	LSM4	100	100.000	Aotus_nancymaae
ENSAMEG00000011162	LSM4	75	83.740	ENSACLG00000022738	lsm4	59	98.851	Astatotilapia_calliptera
ENSAMEG00000011162	LSM4	93	83.942	ENSAMXG00000016932	lsm4	61	97.701	Astyanax_mexicanus
ENSAMEG00000011162	LSM4	95	100.000	ENSBTAG00000008578	LSM4	100	100.000	Bos_taurus
ENSAMEG00000011162	LSM4	56	76.829	WBGene00003078	lsm-4	67	76.829	Caenorhabditis_elegans
ENSAMEG00000011162	LSM4	95	100.000	ENSCJAG00000014171	LSM4	100	100.000	Callithrix_jacchus
ENSAMEG00000011162	LSM4	94	100.000	ENSCAFG00000014900	LSM4	90	100.000	Canis_familiaris
ENSAMEG00000011162	LSM4	95	100.000	ENSCAFG00020012137	LSM4	99	100.000	Canis_lupus_dingo
ENSAMEG00000011162	LSM4	95	100.000	ENSCHIG00000010928	LSM4	92	100.000	Capra_hircus
ENSAMEG00000011162	LSM4	95	99.275	ENSTSYG00000030906	LSM4	100	99.200	Carlito_syrichta
ENSAMEG00000011162	LSM4	95	97.826	ENSCAPG00000014140	LSM4	99	97.826	Cavia_aperea
ENSAMEG00000011162	LSM4	95	97.826	ENSCPOG00000024117	LSM4	99	97.826	Cavia_porcellus
ENSAMEG00000011162	LSM4	95	100.000	ENSCCAG00000036308	LSM4	100	100.000	Cebus_capucinus
ENSAMEG00000011162	LSM4	95	100.000	ENSCATG00000029311	LSM4	100	100.000	Cercocebus_atys
ENSAMEG00000011162	LSM4	95	96.377	ENSCLAG00000010828	LSM4	99	96.377	Chinchilla_lanigera
ENSAMEG00000011162	LSM4	95	100.000	ENSCSAG00000005370	LSM4	99	100.000	Chlorocebus_sabaeus
ENSAMEG00000011162	LSM4	95	81.884	ENSCPBG00000012925	LSM4	99	89.855	Chrysemys_picta_bellii
ENSAMEG00000011162	LSM4	59	90.698	ENSCING00000007519	-	69	91.954	Ciona_intestinalis
ENSAMEG00000011162	LSM4	59	91.860	ENSCSAVG00000008596	-	70	93.103	Ciona_savignyi
ENSAMEG00000011162	LSM4	95	100.000	ENSCANG00000043686	LSM4	100	100.000	Colobus_angolensis_palliatus
ENSAMEG00000011162	LSM4	95	95.652	ENSCGRG00001014436	Lsm4	99	95.652	Cricetulus_griseus_chok1gshd
ENSAMEG00000011162	LSM4	95	95.652	ENSCGRG00000009398	Lsm4	100	95.652	Cricetulus_griseus_crigri
ENSAMEG00000011162	LSM4	66	95.833	ENSCSEG00000016127	lsm4	61	97.701	Cynoglossus_semilaevis
ENSAMEG00000011162	LSM4	93	77.372	ENSCVAG00000010601	lsm4	61	97.701	Cyprinodon_variegatus
ENSAMEG00000011162	LSM4	84	74.797	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSAMEG00000011162	LSM4	92	78.571	ENSDARG00000023852	lsm4	61	98.851	Danio_rerio
ENSAMEG00000011162	LSM4	95	97.826	ENSDORG00000024225	Lsm4	99	97.826	Dipodomys_ordii
ENSAMEG00000011162	LSM4	66	81.250	FBgn0032240	CG17768	56	88.506	Drosophila_melanogaster
ENSAMEG00000011162	LSM4	85	98.387	ENSETEG00000007762	-	100	98.387	Echinops_telfairi
ENSAMEG00000011162	LSM4	95	100.000	ENSECAG00000010141	LSM4	56	100.000	Equus_caballus
ENSAMEG00000011162	LSM4	90	84.328	ENSELUG00000012821	lsm4	66	98.851	Esox_lucius
ENSAMEG00000011162	LSM4	95	100.000	ENSFCAG00000040580	LSM4	100	100.000	Felis_catus
ENSAMEG00000011162	LSM4	95	81.295	ENSFALG00000009478	LSM4	100	89.928	Ficedula_albicollis
ENSAMEG00000011162	LSM4	95	97.101	ENSFDAG00000010124	LSM4	100	97.101	Fukomys_damarensis
ENSAMEG00000011162	LSM4	66	96.907	ENSGMOG00000007729	lsm4	60	98.864	Gadus_morhua
ENSAMEG00000011162	LSM4	95	81.159	ENSGALG00000003385	LSM4	99	89.855	Gallus_gallus
ENSAMEG00000011162	LSM4	75	82.927	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSAMEG00000011162	LSM4	64	97.872	ENSGACG00000008140	lsm4	58	98.851	Gasterosteus_aculeatus
ENSAMEG00000011162	LSM4	95	81.884	ENSGAGG00000017812	LSM4	99	89.855	Gopherus_agassizii
ENSAMEG00000011162	LSM4	95	100.000	ENSGGOG00000012914	-	100	100.000	Gorilla_gorilla
ENSAMEG00000011162	LSM4	95	97.101	ENSHGLG00000006568	LSM4	99	97.101	Heterocephalus_glaber_female
ENSAMEG00000011162	LSM4	64	98.925	ENSHGLG00100007894	LSM4	100	98.925	Heterocephalus_glaber_male
ENSAMEG00000011162	LSM4	93	77.206	ENSHCOG00000008819	lsm4	61	98.851	Hippocampus_comes
ENSAMEG00000011162	LSM4	93	83.942	ENSIPUG00000005368	Lsm4	61	98.851	Ictalurus_punctatus
ENSAMEG00000011162	LSM4	95	100.000	ENSSTOG00000016494	LSM4	99	100.000	Ictidomys_tridecemlineatus
ENSAMEG00000011162	LSM4	95	97.101	ENSJJAG00000017420	Lsm4	99	97.101	Jaculus_jaculus
ENSAMEG00000011162	LSM4	58	97.647	ENSKMAG00000005073	lsm4	60	97.701	Kryptolebias_marmoratus
ENSAMEG00000011162	LSM4	67	96.939	ENSLBEG00000027930	lsm4	58	98.851	Labrus_bergylta
ENSAMEG00000011162	LSM4	93	83.088	ENSLACG00000015861	LSM4	97	83.088	Latimeria_chalumnae
ENSAMEG00000011162	LSM4	88	83.594	ENSLOCG00000002025	lsm4	62	97.701	Lepisosteus_oculatus
ENSAMEG00000011162	LSM4	95	98.561	ENSLAFG00000017459	LSM4	100	98.561	Loxodonta_africana
ENSAMEG00000011162	LSM4	95	100.000	ENSMFAG00000031194	LSM4	100	100.000	Macaca_fascicularis
ENSAMEG00000011162	LSM4	95	100.000	ENSMMUG00000004405	LSM4	100	100.000	Macaca_mulatta
ENSAMEG00000011162	LSM4	95	100.000	ENSMNEG00000042899	LSM4	100	100.000	Macaca_nemestrina
ENSAMEG00000011162	LSM4	95	100.000	ENSMLEG00000027948	LSM4	100	100.000	Mandrillus_leucophaeus
ENSAMEG00000011162	LSM4	93	79.562	ENSMAMG00000006190	lsm4	61	98.851	Mastacembelus_armatus
ENSAMEG00000011162	LSM4	75	83.740	ENSMZEG00005016420	lsm4	60	98.851	Maylandia_zebra
ENSAMEG00000011162	LSM4	95	82.857	ENSMGAG00000004976	LSM4	100	89.928	Meleagris_gallopavo
ENSAMEG00000011162	LSM4	95	99.275	ENSMICG00000000222	LSM4	100	99.200	Microcebus_murinus
ENSAMEG00000011162	LSM4	95	96.377	ENSMOCG00000020861	Lsm4	99	96.377	Microtus_ochrogaster
ENSAMEG00000011162	LSM4	85	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSAMEG00000011162	LSM4	93	76.978	ENSMALG00000018159	lsm4	61	97.701	Monopterus_albus
ENSAMEG00000011162	LSM4	95	96.377	MGP_CAROLIEiJ_G0031158	Lsm4	99	96.377	Mus_caroli
ENSAMEG00000011162	LSM4	95	96.377	ENSMUSG00000031848	Lsm4	99	96.377	Mus_musculus
ENSAMEG00000011162	LSM4	95	96.377	MGP_PahariEiJ_G0021623	Lsm4	99	96.377	Mus_pahari
ENSAMEG00000011162	LSM4	95	96.377	MGP_SPRETEiJ_G0032276	Lsm4	99	96.377	Mus_spretus
ENSAMEG00000011162	LSM4	95	100.000	ENSMPUG00000015589	LSM4	99	100.000	Mustela_putorius_furo
ENSAMEG00000011162	LSM4	95	100.000	ENSMLUG00000004010	LSM4	100	100.000	Myotis_lucifugus
ENSAMEG00000011162	LSM4	95	96.377	ENSNGAG00000008644	Lsm4	100	96.241	Nannospalax_galili
ENSAMEG00000011162	LSM4	68	96.970	ENSNBRG00000022150	lsm4	54	98.864	Neolamprologus_brichardi
ENSAMEG00000011162	LSM4	85	92.742	ENSMEUG00000013229	LSM4	100	92.742	Notamacropus_eugenii
ENSAMEG00000011162	LSM4	85	93.548	ENSOPRG00000005575	LSM4	100	83.065	Ochotona_princeps
ENSAMEG00000011162	LSM4	95	73.188	ENSODEG00000011712	-	99	73.188	Octodon_degus
ENSAMEG00000011162	LSM4	95	97.101	ENSODEG00000020549	-	99	97.101	Octodon_degus
ENSAMEG00000011162	LSM4	95	86.957	ENSODEG00000004519	-	99	74.638	Octodon_degus
ENSAMEG00000011162	LSM4	75	83.740	ENSONIG00000012724	lsm4	59	98.851	Oreochromis_niloticus
ENSAMEG00000011162	LSM4	60	93.478	ENSOANG00000007434	LSM4	79	93.478	Ornithorhynchus_anatinus
ENSAMEG00000011162	LSM4	93	85.000	ENSORLG00000008391	lsm4	60	97.701	Oryzias_latipes
ENSAMEG00000011162	LSM4	93	72.667	ENSORLG00020014829	lsm4	60	97.701	Oryzias_latipes_hni
ENSAMEG00000011162	LSM4	93	85.000	ENSORLG00015010205	lsm4	60	97.701	Oryzias_latipes_hsok
ENSAMEG00000011162	LSM4	95	82.014	ENSOMEG00000003606	lsm4	60	97.701	Oryzias_melastigma
ENSAMEG00000011162	LSM4	68	99.000	ENSOGAG00000027992	LSM4	60	100.000	Otolemur_garnettii
ENSAMEG00000011162	LSM4	82	100.000	ENSOARG00000012553	LSM4	94	100.000	Ovis_aries
ENSAMEG00000011162	LSM4	95	100.000	ENSPPAG00000044045	-	100	100.000	Pan_paniscus
ENSAMEG00000011162	LSM4	95	100.000	ENSPPRG00000018264	LSM4	100	100.000	Panthera_pardus
ENSAMEG00000011162	LSM4	95	100.000	ENSPTIG00000006306	LSM4	100	100.000	Panthera_tigris_altaica
ENSAMEG00000011162	LSM4	95	100.000	ENSPTRG00000031470	LSM4	100	100.000	Pan_troglodytes
ENSAMEG00000011162	LSM4	95	100.000	ENSPANG00000014399	LSM4	100	100.000	Papio_anubis
ENSAMEG00000011162	LSM4	93	81.618	ENSPKIG00000006154	lsm4	62	98.851	Paramormyrops_kingsleyae
ENSAMEG00000011162	LSM4	95	81.159	ENSPSIG00000012358	LSM4	100	89.855	Pelodiscus_sinensis
ENSAMEG00000011162	LSM4	95	96.377	ENSPEMG00000001358	Lsm4	99	96.377	Peromyscus_maniculatus_bairdii
ENSAMEG00000011162	LSM4	93	79.856	ENSPLAG00000016267	lsm4	61	98.851	Poecilia_latipinna
ENSAMEG00000011162	LSM4	94	78.571	ENSPMEG00000016378	lsm4	63	98.864	Poecilia_mexicana
ENSAMEG00000011162	LSM4	95	100.000	ENSPPYG00000009736	LSM4	99	100.000	Pongo_abelii
ENSAMEG00000011162	LSM4	85	98.387	ENSPCAG00000008513	LSM4	100	98.387	Procavia_capensis
ENSAMEG00000011162	LSM4	95	99.275	ENSPCOG00000019837	LSM4	100	99.200	Propithecus_coquereli
ENSAMEG00000011162	LSM4	95	100.000	ENSPVAG00000015383	LSM4	99	100.000	Pteropus_vampyrus
ENSAMEG00000011162	LSM4	75	83.740	ENSPNYG00000016794	lsm4	60	98.851	Pundamilia_nyererei
ENSAMEG00000011162	LSM4	91	83.582	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSAMEG00000011162	LSM4	95	96.377	ENSRNOG00000019572	Lsm4	99	96.377	Rattus_norvegicus
ENSAMEG00000011162	LSM4	95	100.000	ENSRBIG00000024717	LSM4	100	100.000	Rhinopithecus_bieti
ENSAMEG00000011162	LSM4	95	100.000	ENSRROG00000045706	LSM4	100	100.000	Rhinopithecus_roxellana
ENSAMEG00000011162	LSM4	86	100.000	ENSSBOG00000022455	LSM4	100	100.000	Saimiri_boliviensis_boliviensis
ENSAMEG00000011162	LSM4	95	96.377	ENSSHAG00000011559	LSM4	99	96.377	Sarcophilus_harrisii
ENSAMEG00000011162	LSM4	93	80.147	ENSSFOG00015021067	lsm4	62	98.851	Scleropages_formosus
ENSAMEG00000011162	LSM4	67	95.918	ENSSMAG00000021020	lsm4	58	98.851	Scophthalmus_maximus
ENSAMEG00000011162	LSM4	67	96.939	ENSSDUG00000009588	lsm4	52	98.851	Seriola_dumerili
ENSAMEG00000011162	LSM4	67	96.939	ENSSLDG00000006827	lsm4	52	98.851	Seriola_lalandi_dorsalis
ENSAMEG00000011162	LSM4	60	98.864	ENSSPUG00000010166	LSM4	57	98.864	Sphenodon_punctatus
ENSAMEG00000011162	LSM4	67	96.939	ENSSPAG00000011615	lsm4	58	98.851	Stegastes_partitus
ENSAMEG00000011162	LSM4	95	100.000	ENSSSCG00000034314	LSM4	99	100.000	Sus_scrofa
ENSAMEG00000011162	LSM4	75	81.301	ENSTRUG00000021737	lsm4	61	96.552	Takifugu_rubripes
ENSAMEG00000011162	LSM4	93	80.576	ENSTNIG00000010191	lsm4	60	97.701	Tetraodon_nigroviridis
ENSAMEG00000011162	LSM4	95	100.000	ENSUAMG00000000665	LSM4	100	100.000	Ursus_americanus
ENSAMEG00000011162	LSM4	95	100.000	ENSUMAG00000009013	LSM4	99	100.000	Ursus_maritimus
ENSAMEG00000011162	LSM4	95	99.281	ENSVVUG00000008136	LSM4	71	99.281	Vulpes_vulpes
ENSAMEG00000011162	LSM4	95	92.029	ENSXETG00000024933	lsm4	99	89.130	Xenopus_tropicalis