EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMEG00000011474 (Gene tree)
Gene ID: 100480150
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Plus strand
Length: 33759 bases
Position: chrGL192348.1:2017159-2050917
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000012088	UPF1_Zn_bind	PF09416.10	5e-75	1	1
ENSAMEP00000012088	ResIII	PF04851.15	1.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000012604	UPF1-201	3378	-	ENSAMEP00000012088	1125 (aa)	-	G1LYD2

Gene Model

Click here to download ENSAMEG00000011474's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml03013	RNA transport	KEGG
aml03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000011474's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000011474	UPF1	100	98.323	ENSG00000005007	UPF1	100	98.323	Homo_sapiens
ENSAMEG00000011474	UPF1	100	92.014	ENSAPOG00000010916	-	100	92.014	Acanthochromis_polyacanthus
ENSAMEG00000011474	UPF1	100	90.708	ENSAPOG00000023773	upf1	100	90.798	Acanthochromis_polyacanthus
ENSAMEG00000011474	UPF1	100	90.539	ENSACIG00000019949	upf1	100	90.885	Amphilophus_citrinellus
ENSAMEG00000011474	UPF1	92	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSAMEG00000011474	UPF1	100	92.014	ENSAOCG00000006352	-	100	92.014	Amphiprion_ocellaris
ENSAMEG00000011474	UPF1	100	90.222	ENSAOCG00000018519	upf1	100	90.798	Amphiprion_ocellaris
ENSAMEG00000011474	UPF1	100	92.014	ENSAPEG00000006292	-	100	92.014	Amphiprion_percula
ENSAMEG00000011474	UPF1	100	90.222	ENSAPEG00000016344	upf1	100	90.798	Amphiprion_percula
ENSAMEG00000011474	UPF1	100	92.103	ENSATEG00000016606	-	100	92.103	Anabas_testudineus
ENSAMEG00000011474	UPF1	100	89.414	ENSATEG00000017867	upf1	100	90.201	Anabas_testudineus
ENSAMEG00000011474	UPF1	94	98.197	ENSAPLG00000009175	UPF1	100	98.197	Anas_platyrhynchos
ENSAMEG00000011474	UPF1	96	96.846	ENSANAG00000024107	UPF1	97	96.846	Aotus_nancymaae
ENSAMEG00000011474	UPF1	100	90.274	ENSACLG00000007181	upf1	100	90.619	Astatotilapia_calliptera
ENSAMEG00000011474	UPF1	100	91.918	ENSACLG00000022630	-	100	91.829	Astatotilapia_calliptera
ENSAMEG00000011474	UPF1	100	92.635	ENSAMXG00000042187	upf1	100	93.079	Astyanax_mexicanus
ENSAMEG00000011474	UPF1	100	98.496	ENSBTAG00000020922	UPF1	100	98.496	Bos_taurus
ENSAMEG00000011474	UPF1	89	50.342	WBGene00004880	smg-2	99	47.950	Caenorhabditis_elegans
ENSAMEG00000011474	UPF1	100	98.323	ENSCJAG00000019627	UPF1	100	98.323	Callithrix_jacchus
ENSAMEG00000011474	UPF1	100	98.676	ENSCAFG00000014578	UPF1	100	98.676	Canis_familiaris
ENSAMEG00000011474	UPF1	100	97.705	ENSCAFG00020012347	UPF1	100	97.705	Canis_lupus_dingo
ENSAMEG00000011474	UPF1	100	98.670	ENSCHIG00000011018	UPF1	100	98.670	Capra_hircus
ENSAMEG00000011474	UPF1	96	97.780	ENSTSYG00000008877	UPF1	99	97.780	Carlito_syrichta
ENSAMEG00000011474	UPF1	93	98.573	ENSCAPG00000005758	UPF1	95	98.573	Cavia_aperea
ENSAMEG00000011474	UPF1	100	96.711	ENSCPOG00000025463	UPF1	100	96.711	Cavia_porcellus
ENSAMEG00000011474	UPF1	100	98.756	ENSCCAG00000032175	UPF1	100	98.756	Cebus_capucinus
ENSAMEG00000011474	UPF1	94	99.620	ENSCATG00000040306	UPF1	98	99.620	Cercocebus_atys
ENSAMEG00000011474	UPF1	96	98.150	ENSCLAG00000004037	UPF1	99	99.619	Chinchilla_lanigera
ENSAMEG00000011474	UPF1	100	97.352	ENSCSAG00000005276	UPF1	100	97.352	Chlorocebus_sabaeus
ENSAMEG00000011474	UPF1	100	96.280	ENSCPBG00000012513	UPF1	100	96.280	Chrysemys_picta_bellii
ENSAMEG00000011474	UPF1	78	77.133	ENSCING00000021399	-	99	77.386	Ciona_intestinalis
ENSAMEG00000011474	UPF1	99	71.353	ENSCSAVG00000006533	-	99	71.441	Ciona_savignyi
ENSAMEG00000011474	UPF1	96	98.050	ENSCANG00000029819	UPF1	99	98.050	Colobus_angolensis_palliatus
ENSAMEG00000011474	UPF1	100	97.074	ENSCGRG00001021067	Upf1	100	97.074	Cricetulus_griseus_chok1gshd
ENSAMEG00000011474	UPF1	95	97.950	ENSCGRG00000013480	Upf1	99	97.950	Cricetulus_griseus_crigri
ENSAMEG00000011474	UPF1	100	92.007	ENSCSEG00000016159	-	100	91.918	Cynoglossus_semilaevis
ENSAMEG00000011474	UPF1	100	85.537	ENSCSEG00000017239	upf1	100	85.626	Cynoglossus_semilaevis
ENSAMEG00000011474	UPF1	100	91.748	ENSCVAG00000010561	upf1	100	91.659	Cyprinodon_variegatus
ENSAMEG00000011474	UPF1	100	92.458	ENSDARG00000016302	upf1	100	92.902	Danio_rerio
ENSAMEG00000011474	UPF1	95	95.345	ENSDORG00000009984	Upf1	95	96.768	Dipodomys_ordii
ENSAMEG00000011474	UPF1	85	70.329	FBgn0030354	Upf1	84	66.794	Drosophila_melanogaster
ENSAMEG00000011474	UPF1	55	84.160	ENSEBUG00000010069	upf1	96	84.320	Eptatretus_burgeri
ENSAMEG00000011474	UPF1	100	97.522	ENSEASG00005006549	UPF1	100	97.522	Equus_asinus_asinus
ENSAMEG00000011474	UPF1	100	97.522	ENSECAG00000010639	UPF1	100	97.522	Equus_caballus
ENSAMEG00000011474	UPF1	100	91.262	ENSELUG00000012916	-	100	91.182	Esox_lucius
ENSAMEG00000011474	UPF1	100	90.018	ENSELUG00000020917	upf1	100	90.194	Esox_lucius
ENSAMEG00000011474	UPF1	100	98.588	ENSFCAG00000009757	UPF1	100	98.588	Felis_catus
ENSAMEG00000011474	UPF1	96	96.303	ENSFALG00000009312	UPF1	98	96.303	Ficedula_albicollis
ENSAMEG00000011474	UPF1	97	97.151	ENSFDAG00000014816	UPF1	99	99.524	Fukomys_damarensis
ENSAMEG00000011474	UPF1	100	87.676	ENSFHEG00000006428	upf1	100	87.676	Fundulus_heteroclitus
ENSAMEG00000011474	UPF1	85	93.829	ENSFHEG00000016276	-	96	94.011	Fundulus_heteroclitus
ENSAMEG00000011474	UPF1	100	91.571	ENSGMOG00000007541	upf1	100	92.014	Gadus_morhua
ENSAMEG00000011474	UPF1	100	96.463	ENSGALG00000003220	UPF1	100	96.463	Gallus_gallus
ENSAMEG00000011474	UPF1	62	94.043	ENSGAFG00000015443	-	88	91.758	Gambusia_affinis
ENSAMEG00000011474	UPF1	100	91.563	ENSGAFG00000004831	upf1	100	91.474	Gambusia_affinis
ENSAMEG00000011474	UPF1	100	96.536	ENSGAGG00000022217	UPF1	100	96.536	Gopherus_agassizii
ENSAMEG00000011474	UPF1	93	98.763	ENSGGOG00000002608	UPF1	99	98.763	Gorilla_gorilla
ENSAMEG00000011474	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSAMEG00000011474	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSAMEG00000011474	UPF1	100	97.793	ENSHGLG00000010900	UPF1	100	97.793	Heterocephalus_glaber_female
ENSAMEG00000011474	UPF1	96	95.321	ENSHGLG00100005904	UPF1	99	95.321	Heterocephalus_glaber_male
ENSAMEG00000011474	UPF1	100	91.030	ENSHCOG00000008918	upf1	100	93.014	Hippocampus_comes
ENSAMEG00000011474	UPF1	100	93.079	ENSIPUG00000005108	UPF1	100	93.434	Ictalurus_punctatus
ENSAMEG00000011474	UPF1	100	98.316	ENSSTOG00000009196	UPF1	100	98.316	Ictidomys_tridecemlineatus
ENSAMEG00000011474	UPF1	100	97.691	ENSJJAG00000023151	Upf1	100	97.691	Jaculus_jaculus
ENSAMEG00000011474	UPF1	100	92.014	ENSKMAG00000004962	upf1	100	91.925	Kryptolebias_marmoratus
ENSAMEG00000011474	UPF1	100	91.925	ENSLBEG00000027848	-	100	91.925	Labrus_bergylta
ENSAMEG00000011474	UPF1	100	88.782	ENSLBEG00000014862	upf1	100	89.833	Labrus_bergylta
ENSAMEG00000011474	UPF1	62	97.418	ENSLACG00000008482	UPF1	100	97.418	Latimeria_chalumnae
ENSAMEG00000011474	UPF1	100	94.405	ENSLOCG00000002072	upf1	100	94.405	Lepisosteus_oculatus
ENSAMEG00000011474	UPF1	100	97.966	ENSLAFG00000014963	UPF1	100	97.966	Loxodonta_africana
ENSAMEG00000011474	UPF1	100	98.756	ENSMFAG00000037748	UPF1	100	98.756	Macaca_fascicularis
ENSAMEG00000011474	UPF1	100	98.493	ENSMMUG00000023286	UPF1	100	98.493	Macaca_mulatta
ENSAMEG00000011474	UPF1	100	98.756	ENSMNEG00000000046	UPF1	100	98.756	Macaca_nemestrina
ENSAMEG00000011474	UPF1	93	99.810	ENSMLEG00000028404	UPF1	99	99.810	Mandrillus_leucophaeus
ENSAMEG00000011474	UPF1	100	91.304	ENSMAMG00000006231	-	100	91.748	Mastacembelus_armatus
ENSAMEG00000011474	UPF1	100	89.151	ENSMAMG00000006229	upf1	100	90.114	Mastacembelus_armatus
ENSAMEG00000011474	UPF1	100	91.918	ENSMZEG00005016386	-	100	91.829	Maylandia_zebra
ENSAMEG00000011474	UPF1	100	89.248	ENSMZEG00005003489	upf1	100	90.422	Maylandia_zebra
ENSAMEG00000011474	UPF1	93	97.909	ENSMGAG00000004745	UPF1	100	97.909	Meleagris_gallopavo
ENSAMEG00000011474	UPF1	96	97.217	ENSMAUG00000011398	Upf1	97	97.217	Mesocricetus_auratus
ENSAMEG00000011474	UPF1	100	97.087	ENSMICG00000001659	UPF1	100	97.087	Microcebus_murinus
ENSAMEG00000011474	UPF1	100	97.961	ENSMOCG00000005699	Upf1	100	97.961	Microtus_ochrogaster
ENSAMEG00000011474	UPF1	94	91.304	ENSMMOG00000007537	-	100	91.399	Mola_mola
ENSAMEG00000011474	UPF1	100	89.956	ENSMMOG00000007881	upf1	100	90.409	Mola_mola
ENSAMEG00000011474	UPF1	100	97.359	ENSMODG00000003689	UPF1	100	97.359	Monodelphis_domestica
ENSAMEG00000011474	UPF1	100	90.222	ENSMALG00000000144	upf1	100	90.489	Monopterus_albus
ENSAMEG00000011474	UPF1	100	90.813	ENSMALG00000018100	-	100	90.813	Monopterus_albus
ENSAMEG00000011474	UPF1	100	97.961	MGP_CAROLIEiJ_G0031142	Upf1	100	97.961	Mus_caroli
ENSAMEG00000011474	UPF1	100	97.961	ENSMUSG00000058301	Upf1	100	97.961	Mus_musculus
ENSAMEG00000011474	UPF1	100	97.961	MGP_PahariEiJ_G0021607	Upf1	100	97.961	Mus_pahari
ENSAMEG00000011474	UPF1	100	97.961	MGP_SPRETEiJ_G0032260	Upf1	100	97.961	Mus_spretus
ENSAMEG00000011474	UPF1	100	97.705	ENSMPUG00000015516	UPF1	100	97.705	Mustela_putorius_furo
ENSAMEG00000011474	UPF1	99	97.343	ENSMLUG00000012122	UPF1	99	97.343	Myotis_lucifugus
ENSAMEG00000011474	UPF1	100	97.524	ENSNGAG00000024107	Upf1	100	97.524	Nannospalax_galili
ENSAMEG00000011474	UPF1	100	89.628	ENSNBRG00000022069	-	100	92.981	Neolamprologus_brichardi
ENSAMEG00000011474	UPF1	100	88.594	ENSNBRG00000000670	upf1	100	88.938	Neolamprologus_brichardi
ENSAMEG00000011474	UPF1	93	94.006	ENSNLEG00000006062	UPF1	99	94.006	Nomascus_leucogenys
ENSAMEG00000011474	UPF1	83	94.510	ENSMEUG00000014146	-	83	94.510	Notamacropus_eugenii
ENSAMEG00000011474	UPF1	93	90.771	ENSOPRG00000014018	UPF1	99	90.771	Ochotona_princeps
ENSAMEG00000011474	UPF1	100	98.133	ENSODEG00000012426	UPF1	100	98.133	Octodon_degus
ENSAMEG00000011474	UPF1	100	92.007	ENSONIG00000012729	-	100	91.918	Oreochromis_niloticus
ENSAMEG00000011474	UPF1	100	89.510	ENSONIG00000010452	upf1	100	90.685	Oreochromis_niloticus
ENSAMEG00000011474	UPF1	100	97.259	ENSOANG00000004568	UPF1	100	97.259	Ornithorhynchus_anatinus
ENSAMEG00000011474	UPF1	100	91.925	ENSORLG00000008453	upf1	100	91.925	Oryzias_latipes
ENSAMEG00000011474	UPF1	100	91.925	ENSORLG00020014758	upf1	100	91.925	Oryzias_latipes_hni
ENSAMEG00000011474	UPF1	100	91.925	ENSORLG00015010165	upf1	100	91.925	Oryzias_latipes_hsok
ENSAMEG00000011474	UPF1	100	92.014	ENSOMEG00000003665	upf1	100	91.925	Oryzias_melastigma
ENSAMEG00000011474	UPF1	100	97.440	ENSOGAG00000012866	UPF1	100	97.440	Otolemur_garnettii
ENSAMEG00000011474	UPF1	96	97.518	ENSOARG00000010739	UPF1	100	97.518	Ovis_aries
ENSAMEG00000011474	UPF1	96	98.050	ENSPPAG00000043884	UPF1	97	98.050	Pan_paniscus
ENSAMEG00000011474	UPF1	100	98.588	ENSPPRG00000023470	UPF1	100	98.588	Panthera_pardus
ENSAMEG00000011474	UPF1	94	96.771	ENSPTIG00000010159	UPF1	99	96.771	Panthera_tigris_altaica
ENSAMEG00000011474	UPF1	100	98.756	ENSPTRG00000010721	UPF1	100	98.756	Pan_troglodytes
ENSAMEG00000011474	UPF1	100	98.756	ENSPANG00000008847	UPF1	100	98.756	Papio_anubis
ENSAMEG00000011474	UPF1	94	91.910	ENSPKIG00000006069	upf1	99	91.816	Paramormyrops_kingsleyae
ENSAMEG00000011474	UPF1	68	98.039	ENSPSIG00000009491	UPF1	100	98.039	Pelodiscus_sinensis
ENSAMEG00000011474	UPF1	100	88.584	ENSPMGG00000017327	upf1	100	88.693	Periophthalmus_magnuspinnatus
ENSAMEG00000011474	UPF1	100	98.050	ENSPEMG00000001085	Upf1	100	98.050	Peromyscus_maniculatus_bairdii
ENSAMEG00000011474	UPF1	100	86.957	ENSPMAG00000001206	upf1	100	86.602	Petromyzon_marinus
ENSAMEG00000011474	UPF1	100	96.823	ENSPCIG00000006156	UPF1	100	96.823	Phascolarctos_cinereus
ENSAMEG00000011474	UPF1	100	88.732	ENSPLAG00000018155	-	100	88.644	Poecilia_latipinna
ENSAMEG00000011474	UPF1	100	91.652	ENSPLAG00000016232	-	100	91.563	Poecilia_latipinna
ENSAMEG00000011474	UPF1	100	91.741	ENSPMEG00000016319	-	100	91.652	Poecilia_mexicana
ENSAMEG00000011474	UPF1	100	89.273	ENSPMEG00000011443	-	100	89.184	Poecilia_mexicana
ENSAMEG00000011474	UPF1	100	89.173	ENSPREG00000009940	upf1	100	89.085	Poecilia_reticulata
ENSAMEG00000011474	UPF1	100	91.474	ENSPREG00000011247	-	100	91.385	Poecilia_reticulata
ENSAMEG00000011474	UPF1	100	93.380	ENSPPYG00000009752	UPF1	100	93.380	Pongo_abelii
ENSAMEG00000011474	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSAMEG00000011474	UPF1	100	98.492	ENSPCOG00000023813	UPF1	100	98.492	Propithecus_coquereli
ENSAMEG00000011474	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSAMEG00000011474	UPF1	100	89.248	ENSPNYG00000003694	upf1	100	90.422	Pundamilia_nyererei
ENSAMEG00000011474	UPF1	100	91.918	ENSPNYG00000016731	-	100	91.829	Pundamilia_nyererei
ENSAMEG00000011474	UPF1	100	92.635	ENSPNAG00000025614	upf1	100	93.079	Pygocentrus_nattereri
ENSAMEG00000011474	UPF1	100	97.961	ENSRNOG00000020134	Upf1	100	97.961	Rattus_norvegicus
ENSAMEG00000011474	UPF1	96	95.729	ENSRBIG00000013894	UPF1	98	98.485	Rhinopithecus_bieti
ENSAMEG00000011474	UPF1	96	98.050	ENSRROG00000040935	UPF1	99	98.050	Rhinopithecus_roxellana
ENSAMEG00000011474	UPF1	75	55.012	YMR080C	NAM7	84	56.348	Saccharomyces_cerevisiae
ENSAMEG00000011474	UPF1	96	97.872	ENSSBOG00000023632	UPF1	98	97.872	Saimiri_boliviensis_boliviensis
ENSAMEG00000011474	UPF1	93	99.050	ENSSHAG00000010499	UPF1	100	99.050	Sarcophilus_harrisii
ENSAMEG00000011474	UPF1	100	94.494	ENSSFOG00015021095	upf1	99	96.300	Scleropages_formosus
ENSAMEG00000011474	UPF1	100	92.014	ENSSMAG00000021018	-	100	92.014	Scophthalmus_maximus
ENSAMEG00000011474	UPF1	100	88.431	ENSSMAG00000005055	upf1	100	89.229	Scophthalmus_maximus
ENSAMEG00000011474	UPF1	100	92.280	ENSSDUG00000009629	-	100	92.280	Seriola_dumerili
ENSAMEG00000011474	UPF1	100	89.414	ENSSDUG00000013320	upf1	100	90.376	Seriola_dumerili
ENSAMEG00000011474	UPF1	100	92.280	ENSSLDG00000006878	-	100	92.280	Seriola_lalandi_dorsalis
ENSAMEG00000011474	UPF1	100	90.203	ENSSLDG00000020868	upf1	100	90.661	Seriola_lalandi_dorsalis
ENSAMEG00000011474	UPF1	100	96.444	ENSSPUG00000010538	UPF1	100	96.444	Sphenodon_punctatus
ENSAMEG00000011474	UPF1	100	88.721	ENSSPAG00000000003	upf1	100	88.663	Stegastes_partitus
ENSAMEG00000011474	UPF1	100	92.096	ENSSPAG00000011521	-	100	92.007	Stegastes_partitus
ENSAMEG00000011474	UPF1	100	98.407	ENSSSCG00000039301	UPF1	100	98.407	Sus_scrofa
ENSAMEG00000011474	UPF1	83	89.787	ENSTGUG00000001057	UPF1	100	94.559	Taeniopygia_guttata
ENSAMEG00000011474	UPF1	100	89.867	ENSTRUG00000000150	upf1	100	89.778	Takifugu_rubripes
ENSAMEG00000011474	UPF1	100	91.030	ENSTRUG00000005131	-	100	91.030	Takifugu_rubripes
ENSAMEG00000011474	UPF1	100	93.628	ENSTTRG00000011544	UPF1	100	93.274	Tursiops_truncatus
ENSAMEG00000011474	UPF1	100	97.617	ENSUAMG00000007093	UPF1	100	97.617	Ursus_americanus
ENSAMEG00000011474	UPF1	96	98.605	ENSUMAG00000006652	UPF1	99	98.872	Ursus_maritimus
ENSAMEG00000011474	UPF1	100	97.705	ENSVVUG00000007797	UPF1	100	97.705	Vulpes_vulpes
ENSAMEG00000011474	UPF1	100	82.234	ENSXETG00000013602	upf1	100	81.430	Xenopus_tropicalis
ENSAMEG00000011474	UPF1	93	93.858	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSAMEG00000011474	UPF1	97	88.981	ENSXCOG00000015275	-	96	88.981	Xiphophorus_couchianus
ENSAMEG00000011474	UPF1	100	91.563	ENSXMAG00000002540	-	100	91.474	Xiphophorus_maculatus
ENSAMEG00000011474	UPF1	100	89.254	ENSXMAG00000001703	-	100	89.254	Xiphophorus_maculatus