EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMEG00000011535 (Gene tree)
Gene ID: 100465799
Gene Symbol: -
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Minus strand
Length: 13313 bases
Position: chrGL194627.1:58362-71674
Accession: 100465799
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000012204	PABP	PF00658.18	1.4e-31	1	1
ENSAMEP00000012204	RRM_5	PF13893.6	3.8e-09	1	2
ENSAMEP00000012204	RRM_5	PF13893.6	3.8e-09	2	2
ENSAMEP00000012204	RRM_1	PF00076.22	5.2e-92	1	4
ENSAMEP00000012204	RRM_1	PF00076.22	5.2e-92	2	4
ENSAMEP00000012204	RRM_1	PF00076.22	5.2e-92	3	4
ENSAMEP00000012204	RRM_1	PF00076.22	5.2e-92	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000012722	-	1983	-	ENSAMEP00000012204	660 (aa)	XP_011215427	G1LYP7

Gene Model

Click here to download ENSAMEG00000011535's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml03013	RNA transport	KEGG
aml03015	mRNA surveillance pathway	KEGG
aml03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000011535's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMEG00000011535	-	57	30.625	ENSAMEG00000017455	ELAVL4	89	33.735
ENSAMEG00000011535	-	56	67.416	ENSAMEG00000020114	PABPC5	96	67.218
ENSAMEG00000011535	-	98	54.839	ENSAMEG00000015083	-	99	54.531
ENSAMEG00000011535	-	56	34.940	ENSAMEG00000007555	ELAVL2	83	34.940
ENSAMEG00000011535	-	55	37.500	ENSAMEG00000004946	CELF2	59	37.500
ENSAMEG00000011535	-	99	74.030	ENSAMEG00000000348	PABPC1	99	73.724
ENSAMEG00000011535	-	56	76.142	ENSAMEG00000019441	-	99	76.142
ENSAMEG00000011535	-	52	31.481	ENSAMEG00000016316	HNRNPA0	55	32.450
ENSAMEG00000011535	-	60	33.735	ENSAMEG00000010487	ELAVL3	92	33.735
ENSAMEG00000011535	-	98	64.823	ENSAMEG00000004099	PABPC1L	100	65.023

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000011535	-	100	98.939	ENSG00000090621	PABPC4	100	99.225	Homo_sapiens
ENSAMEG00000011535	-	99	79.394	ENSAPOG00000001161	pabpc4	100	79.671	Acanthochromis_polyacanthus
ENSAMEG00000011535	-	100	79.821	ENSACIG00000023343	pabpc4	100	80.419	Amphilophus_citrinellus
ENSAMEG00000011535	-	99	79.697	ENSAOCG00000021529	pabpc4	100	79.970	Amphiprion_ocellaris
ENSAMEG00000011535	-	99	79.697	ENSAPEG00000019196	pabpc4	100	79.970	Amphiprion_percula
ENSAMEG00000011535	-	99	78.669	ENSATEG00000007402	pabpc4	100	79.104	Anabas_testudineus
ENSAMEG00000011535	-	99	87.405	ENSAPLG00000009729	-	100	87.405	Anas_platyrhynchos
ENSAMEG00000011535	-	99	85.544	ENSACAG00000002544	PABPC4	100	85.544	Anolis_carolinensis
ENSAMEG00000011535	-	100	98.788	ENSANAG00000025079	PABPC4	100	98.788	Aotus_nancymaae
ENSAMEG00000011535	-	100	79.522	ENSACLG00000019558	pabpc4	100	80.120	Astatotilapia_calliptera
ENSAMEG00000011535	-	99	75.758	ENSAMXG00000018779	pabpc4	99	76.364	Astyanax_mexicanus
ENSAMEG00000011535	-	55	87.425	ENSBTAG00000048536	-	98	87.425	Bos_taurus
ENSAMEG00000011535	-	100	96.520	ENSBTAG00000017125	PABPC4	100	96.520	Bos_taurus
ENSAMEG00000011535	-	100	98.636	ENSCJAG00000002512	-	100	98.636	Callithrix_jacchus
ENSAMEG00000011535	-	78	82.784	ENSCJAG00000045953	-	92	82.721	Callithrix_jacchus
ENSAMEG00000011535	-	99	100.000	ENSCAFG00000003081	PABPC4	100	95.455	Canis_familiaris
ENSAMEG00000011535	-	100	99.848	ENSCAFG00020004161	PABPC4	100	99.848	Canis_lupus_dingo
ENSAMEG00000011535	-	100	99.091	ENSCHIG00000019398	-	100	99.091	Capra_hircus
ENSAMEG00000011535	-	100	76.364	ENSCHIG00000023385	-	100	76.364	Capra_hircus
ENSAMEG00000011535	-	100	98.939	ENSTSYG00000006532	PABPC4	100	98.939	Carlito_syrichta
ENSAMEG00000011535	-	99	98.632	ENSCAPG00000015984	PABPC4	100	98.632	Cavia_aperea
ENSAMEG00000011535	-	100	98.636	ENSCPOG00000009552	PABPC4	100	98.636	Cavia_porcellus
ENSAMEG00000011535	-	100	98.788	ENSCCAG00000037306	PABPC4	100	98.788	Cebus_capucinus
ENSAMEG00000011535	-	100	99.091	ENSCATG00000042164	PABPC4	100	99.091	Cercocebus_atys
ENSAMEG00000011535	-	100	98.788	ENSCLAG00000011899	PABPC4	100	98.788	Chinchilla_lanigera
ENSAMEG00000011535	-	100	99.091	ENSCSAG00000001135	PABPC4	100	99.091	Chlorocebus_sabaeus
ENSAMEG00000011535	-	82	97.889	ENSCHOG00000005327	PABPC4	81	97.889	Choloepus_hoffmanni
ENSAMEG00000011535	-	99	87.709	ENSCPBG00000001038	PABPC4	100	87.709	Chrysemys_picta_bellii
ENSAMEG00000011535	-	99	98.925	ENSCANG00000034177	PABPC4	100	98.925	Colobus_angolensis_palliatus
ENSAMEG00000011535	-	100	97.139	ENSCGRG00001018166	Pabpc4	100	97.139	Cricetulus_griseus_chok1gshd
ENSAMEG00000011535	-	99	94.809	ENSCGRG00000009777	Pabpc4	100	94.809	Cricetulus_griseus_crigri
ENSAMEG00000011535	-	100	79.073	ENSCSEG00000000130	pabpc4	100	79.671	Cynoglossus_semilaevis
ENSAMEG00000011535	-	99	79.939	ENSCVAG00000019246	pabpc4	100	80.699	Cyprinodon_variegatus
ENSAMEG00000011535	-	99	81.487	ENSDARG00000059259	pabpc4	100	82.104	Danio_rerio
ENSAMEG00000011535	-	98	99.483	ENSDNOG00000018444	-	99	99.483	Dasypus_novemcinctus
ENSAMEG00000011535	-	100	96.515	ENSDORG00000011581	Pabpc4	100	96.515	Dipodomys_ordii
ENSAMEG00000011535	-	100	98.438	ENSETEG00000018453	-	84	98.438	Echinops_telfairi
ENSAMEG00000011535	-	86	62.039	ENSETEG00000009172	-	99	62.087	Echinops_telfairi
ENSAMEG00000011535	-	97	73.302	ENSEBUG00000013782	pabpc4	99	73.414	Eptatretus_burgeri
ENSAMEG00000011535	-	99	73.222	ENSEBUG00000000992	pabpc4	99	80.130	Eptatretus_burgeri
ENSAMEG00000011535	-	100	99.394	ENSEASG00005014119	PABPC4	100	99.394	Equus_asinus_asinus
ENSAMEG00000011535	-	100	99.394	ENSECAG00000009396	PABPC4	100	99.394	Equus_caballus
ENSAMEG00000011535	-	100	95.758	ENSEEUG00000002962	PABPC4	100	95.758	Erinaceus_europaeus
ENSAMEG00000011535	-	99	80.213	ENSELUG00000003195	pabpc4	98	80.938	Esox_lucius
ENSAMEG00000011535	-	100	99.697	ENSFCAG00000015254	-	100	99.697	Felis_catus
ENSAMEG00000011535	-	99	86.950	ENSFALG00000000543	PABPC4	100	86.950	Ficedula_albicollis
ENSAMEG00000011535	-	90	66.872	ENSFDAG00000010581	-	100	62.857	Fukomys_damarensis
ENSAMEG00000011535	-	100	98.939	ENSFDAG00000020016	-	100	98.939	Fukomys_damarensis
ENSAMEG00000011535	-	100	79.790	ENSFHEG00000007548	pabpc4	93	90.807	Fundulus_heteroclitus
ENSAMEG00000011535	-	99	79.066	ENSGMOG00000019025	pabpc4	99	79.789	Gadus_morhua
ENSAMEG00000011535	-	99	87.860	ENSGALG00000003800	PABPC4	100	87.860	Gallus_gallus
ENSAMEG00000011535	-	100	80.180	ENSGAFG00000018195	pabpc4	98	95.000	Gambusia_affinis
ENSAMEG00000011535	-	100	78.027	ENSGACG00000007179	pabpc4	100	78.625	Gasterosteus_aculeatus
ENSAMEG00000011535	-	99	87.557	ENSGAGG00000001888	PABPC4	100	86.495	Gopherus_agassizii
ENSAMEG00000011535	-	100	98.939	ENSGGOG00000004002	PABPC4	100	98.939	Gorilla_gorilla
ENSAMEG00000011535	-	100	79.671	ENSHBUG00000020206	pabpc4	100	80.269	Haplochromis_burtoni
ENSAMEG00000011535	-	100	99.091	ENSHGLG00000011162	PABPC4	100	99.091	Heterocephalus_glaber_female
ENSAMEG00000011535	-	100	96.818	ENSHGLG00100001580	PABPC4	100	96.818	Heterocephalus_glaber_male
ENSAMEG00000011535	-	100	78.892	ENSHCOG00000012694	pabpc4	100	79.192	Hippocampus_comes
ENSAMEG00000011535	-	98	79.755	ENSIPUG00000016620	pabpc4	99	80.180	Ictalurus_punctatus
ENSAMEG00000011535	-	100	96.667	ENSSTOG00000010416	PABPC4	100	96.667	Ictidomys_tridecemlineatus
ENSAMEG00000011535	-	100	94.697	ENSJJAG00000007781	Pabpc4	100	94.697	Jaculus_jaculus
ENSAMEG00000011535	-	99	90.847	ENSKMAG00000013597	pabpc4	99	79.518	Kryptolebias_marmoratus
ENSAMEG00000011535	-	100	78.869	ENSLBEG00000013654	pabpc4	100	79.136	Labrus_bergylta
ENSAMEG00000011535	-	99	84.163	ENSLACG00000011907	PABPC4	100	82.805	Latimeria_chalumnae
ENSAMEG00000011535	-	99	82.229	ENSLOCG00000001877	pabpc4	99	82.982	Lepisosteus_oculatus
ENSAMEG00000011535	-	100	99.394	ENSLAFG00000000151	PABPC4	100	99.394	Loxodonta_africana
ENSAMEG00000011535	-	100	99.091	ENSMFAG00000041481	PABPC4	100	99.091	Macaca_fascicularis
ENSAMEG00000011535	-	100	99.091	ENSMMUG00000007497	PABPC4	100	99.091	Macaca_mulatta
ENSAMEG00000011535	-	100	98.939	ENSMNEG00000043054	PABPC4	100	98.939	Macaca_nemestrina
ENSAMEG00000011535	-	100	99.091	ENSMLEG00000040716	PABPC4	100	99.091	Mandrillus_leucophaeus
ENSAMEG00000011535	-	99	79.394	ENSMAMG00000010025	pabpc4	99	79.248	Mastacembelus_armatus
ENSAMEG00000011535	-	100	79.372	ENSMZEG00005006141	pabpc4	100	79.970	Maylandia_zebra
ENSAMEG00000011535	-	99	87.248	ENSMGAG00000005408	PABPC4	100	87.248	Meleagris_gallopavo
ENSAMEG00000011535	-	55	81.871	ENSMAUG00000004089	-	92	81.871	Mesocricetus_auratus
ENSAMEG00000011535	-	74	95.413	ENSMAUG00000019763	-	84	95.413	Mesocricetus_auratus
ENSAMEG00000011535	-	69	89.423	ENSMAUG00000001295	-	97	89.423	Mesocricetus_auratus
ENSAMEG00000011535	-	89	94.924	ENSMICG00000016633	-	97	98.723	Microcebus_murinus
ENSAMEG00000011535	-	99	73.818	ENSMICG00000036729	-	100	76.182	Microcebus_murinus
ENSAMEG00000011535	-	100	97.590	ENSMOCG00000006763	Pabpc4	100	97.590	Microtus_ochrogaster
ENSAMEG00000011535	-	100	74.074	ENSMMOG00000002363	pabpc4	99	77.074	Mola_mola
ENSAMEG00000011535	-	56	73.729	ENSMODG00000018051	-	91	73.729	Monodelphis_domestica
ENSAMEG00000011535	-	98	89.043	ENSMODG00000017657	-	100	88.636	Monodelphis_domestica
ENSAMEG00000011535	-	99	79.154	ENSMALG00000011017	pabpc4	100	79.434	Monopterus_albus
ENSAMEG00000011535	-	99	83.729	MGP_CAROLIEiJ_G0024864	-	100	83.729	Mus_caroli
ENSAMEG00000011535	-	100	97.424	MGP_CAROLIEiJ_G0026435	-	100	98.582	Mus_caroli
ENSAMEG00000011535	-	100	97.879	ENSMUSG00000011257	Pabpc4	100	98.810	Mus_musculus
ENSAMEG00000011535	-	99	97.542	MGP_PahariEiJ_G0028765	Pabpc4	100	99.291	Mus_pahari
ENSAMEG00000011535	-	99	78.752	MGP_SPRETEiJ_G0027415	Pabpc4	100	98.582	Mus_spretus
ENSAMEG00000011535	-	100	99.697	ENSMPUG00000014414	-	100	99.697	Mustela_putorius_furo
ENSAMEG00000011535	-	95	51.027	ENSMPUG00000006836	-	100	49.842	Mustela_putorius_furo
ENSAMEG00000011535	-	100	92.424	ENSMLUG00000012068	PABPC4	100	92.424	Myotis_lucifugus
ENSAMEG00000011535	-	100	96.667	ENSNGAG00000018292	Pabpc4	100	96.667	Nannospalax_galili
ENSAMEG00000011535	-	57	92.308	ENSNBRG00000009708	pabpc4	98	92.308	Neolamprologus_brichardi
ENSAMEG00000011535	-	64	86.441	ENSNBRG00000010047	-	75	86.441	Neolamprologus_brichardi
ENSAMEG00000011535	-	100	96.818	ENSNLEG00000011928	PABPC4	100	96.818	Nomascus_leucogenys
ENSAMEG00000011535	-	82	98.526	ENSOPRG00000011984	PABPC4	87	98.526	Ochotona_princeps
ENSAMEG00000011535	-	99	89.528	ENSODEG00000017434	-	100	89.409	Octodon_degus
ENSAMEG00000011535	-	50	85.714	ENSODEG00000013457	-	100	85.714	Octodon_degus
ENSAMEG00000011535	-	100	98.333	ENSODEG00000006592	-	100	98.333	Octodon_degus
ENSAMEG00000011535	-	100	79.671	ENSONIG00000008176	pabpc4	100	80.269	Oreochromis_niloticus
ENSAMEG00000011535	-	99	87.253	ENSOANG00000010001	PABPC4	100	87.253	Ornithorhynchus_anatinus
ENSAMEG00000011535	-	96	98.734	ENSOCUG00000000562	PABPC4	88	98.734	Oryctolagus_cuniculus
ENSAMEG00000011535	-	99	90.741	ENSORLG00000017479	pabpc4	99	90.741	Oryzias_latipes
ENSAMEG00000011535	-	99	90.741	ENSORLG00020018644	pabpc4	99	90.741	Oryzias_latipes_hni
ENSAMEG00000011535	-	99	90.741	ENSORLG00015015042	pabpc4	99	90.741	Oryzias_latipes_hsok
ENSAMEG00000011535	-	99	79.697	ENSOMEG00000014410	pabpc4	99	83.266	Oryzias_melastigma
ENSAMEG00000011535	-	100	96.531	ENSOGAG00000004067	PABPC4	100	96.531	Otolemur_garnettii
ENSAMEG00000011535	-	100	99.091	ENSOARG00000020060	PABPC4	100	99.091	Ovis_aries
ENSAMEG00000011535	-	100	98.939	ENSPPAG00000043625	PABPC4	100	98.939	Pan_paniscus
ENSAMEG00000011535	-	100	99.697	ENSPPRG00000024727	PABPC4	100	99.697	Panthera_pardus
ENSAMEG00000011535	-	100	99.697	ENSPTIG00000005829	PABPC4	100	99.697	Panthera_tigris_altaica
ENSAMEG00000011535	-	100	98.939	ENSPTRG00000000573	PABPC4	100	98.939	Pan_troglodytes
ENSAMEG00000011535	-	100	99.242	ENSPANG00000009484	PABPC4	100	99.242	Papio_anubis
ENSAMEG00000011535	-	99	81.089	ENSPKIG00000025356	pabpc4	99	81.694	Paramormyrops_kingsleyae
ENSAMEG00000011535	-	99	87.709	ENSPSIG00000016892	PABPC4	100	87.709	Pelodiscus_sinensis
ENSAMEG00000011535	-	100	76.471	ENSPMGG00000009073	pabpc4	99	77.039	Periophthalmus_magnuspinnatus
ENSAMEG00000011535	-	100	97.121	ENSPEMG00000023569	-	99	97.121	Peromyscus_maniculatus_bairdii
ENSAMEG00000011535	-	100	90.909	ENSPEMG00000024193	-	99	90.909	Peromyscus_maniculatus_bairdii
ENSAMEG00000011535	-	97	67.505	ENSPMAG00000007885	pabpc4	100	66.667	Petromyzon_marinus
ENSAMEG00000011535	-	89	70.132	ENSPMAG00000002836	pabpc4	100	70.297	Petromyzon_marinus
ENSAMEG00000011535	-	98	88.253	ENSPCIG00000020674	PABPC4	100	93.571	Phascolarctos_cinereus
ENSAMEG00000011535	-	100	79.192	ENSPFOG00000002682	pabpc4	100	79.790	Poecilia_formosa
ENSAMEG00000011535	-	100	79.042	ENSPLAG00000010112	pabpc4	100	80.240	Poecilia_latipinna
ENSAMEG00000011535	-	99	79.635	ENSPMEG00000019739	pabpc4	100	79.940	Poecilia_mexicana
ENSAMEG00000011535	-	100	83.220	ENSPREG00000001589	pabpc4	100	83.220	Poecilia_reticulata
ENSAMEG00000011535	-	100	98.939	ENSPPYG00000001506	PABPC4	100	98.939	Pongo_abelii
ENSAMEG00000011535	-	100	94.394	ENSPCAG00000003341	PABPC4	100	94.394	Procavia_capensis
ENSAMEG00000011535	-	100	99.092	ENSPCOG00000023725	-	100	99.092	Propithecus_coquereli
ENSAMEG00000011535	-	99	81.664	ENSPCOG00000025882	-	95	94.059	Propithecus_coquereli
ENSAMEG00000011535	-	99	98.992	ENSPVAG00000002187	PABPC4	100	98.992	Pteropus_vampyrus
ENSAMEG00000011535	-	100	79.522	ENSPNYG00000006134	pabpc4	100	80.120	Pundamilia_nyererei
ENSAMEG00000011535	-	100	79.790	ENSPNAG00000024355	pabpc4	100	80.689	Pygocentrus_nattereri
ENSAMEG00000011535	-	100	95.455	ENSRNOG00000015642	Pabpc4	100	95.455	Rattus_norvegicus
ENSAMEG00000011535	-	100	93.333	ENSRNOG00000028592	AABR07035074.1	100	93.333	Rattus_norvegicus
ENSAMEG00000011535	-	100	99.091	ENSRBIG00000039761	PABPC4	100	99.091	Rhinopithecus_bieti
ENSAMEG00000011535	-	100	99.091	ENSRROG00000033355	PABPC4	100	99.091	Rhinopithecus_roxellana
ENSAMEG00000011535	-	100	98.939	ENSSBOG00000026193	PABPC4	100	98.939	Saimiri_boliviensis_boliviensis
ENSAMEG00000011535	-	98	88.099	ENSSHAG00000018139	PABPC4	100	87.709	Sarcophilus_harrisii
ENSAMEG00000011535	-	99	81.975	ENSSFOG00015023514	pabpc4	99	81.975	Scleropages_formosus
ENSAMEG00000011535	-	99	78.971	ENSSMAG00000009007	pabpc4	99	79.123	Scophthalmus_maximus
ENSAMEG00000011535	-	99	79.091	ENSSDUG00000012683	pabpc4	95	87.816	Seriola_dumerili
ENSAMEG00000011535	-	99	79.091	ENSSLDG00000013025	pabpc4	97	85.366	Seriola_lalandi_dorsalis
ENSAMEG00000011535	-	100	91.970	ENSSARG00000000310	PABPC4	100	91.970	Sorex_araneus
ENSAMEG00000011535	-	99	87.405	ENSSPUG00000003204	PABPC4	100	87.253	Sphenodon_punctatus
ENSAMEG00000011535	-	99	79.728	ENSSPAG00000009252	pabpc4	99	79.880	Stegastes_partitus
ENSAMEG00000011535	-	89	50.673	ENSSSCG00000036170	-	96	50.673	Sus_scrofa
ENSAMEG00000011535	-	100	99.242	ENSSSCG00000003660	-	100	99.242	Sus_scrofa
ENSAMEG00000011535	-	99	87.595	ENSTGUG00000001266	PABPC4	100	87.595	Taeniopygia_guttata
ENSAMEG00000011535	-	100	79.129	ENSTRUG00000005907	pabpc4	99	79.730	Takifugu_rubripes
ENSAMEG00000011535	-	100	75.716	ENSTNIG00000016902	pabpc4	99	75.716	Tetraodon_nigroviridis
ENSAMEG00000011535	-	99	88.067	ENSTBEG00000009035	PABPC4	100	88.067	Tupaia_belangeri
ENSAMEG00000011535	-	99	83.716	ENSTTRG00000014340	PABPC4	100	87.395	Tursiops_truncatus
ENSAMEG00000011535	-	100	99.697	ENSUAMG00000000303	PABPC4	100	99.697	Ursus_americanus
ENSAMEG00000011535	-	100	99.697	ENSUMAG00000019585	PABPC4	100	99.830	Ursus_maritimus
ENSAMEG00000011535	-	84	97.872	ENSVPAG00000010041	PABPC4	77	97.872	Vicugna_pacos
ENSAMEG00000011535	-	100	99.848	ENSVVUG00000005215	PABPC4	100	99.848	Vulpes_vulpes
ENSAMEG00000011535	-	99	79.514	ENSXETG00000010946	pabpc4	100	79.514	Xenopus_tropicalis
ENSAMEG00000011535	-	61	96.429	ENSXETG00000027221	-	100	96.429	Xenopus_tropicalis
ENSAMEG00000011535	-	99	78.073	ENSXCOG00000013190	pabpc4	96	90.094	Xiphophorus_couchianus
ENSAMEG00000011535	-	100	79.341	ENSXMAG00000019007	pabpc4	100	80.090	Xiphophorus_maculatus