EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMEG00000012538 (Gene tree)
Gene ID: 100464646
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Minus strand
Length: 98888 bases
Position: chrGL192498.1:548945-647832
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000013226	XRN_N	PF03159.18	1.4e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000013783	XRN1-201	5181	-	ENSAMEP00000013226	1726 (aa)	-	G1M1L5

Gene Model

Click here to download ENSAMEG00000012538's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml03008	Ribosome biogenesis in eukaryotes	KEGG
aml03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000012538's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000012538	XRN1	100	91.354	ENSG00000114127	XRN1	100	96.970	Homo_sapiens
ENSAMEG00000012538	XRN1	93	72.690	ENSAPOG00000000622	xrn1	93	76.333	Acanthochromis_polyacanthus
ENSAMEG00000012538	XRN1	93	72.227	ENSACIG00000001057	xrn1	93	72.182	Amphilophus_citrinellus
ENSAMEG00000012538	XRN1	95	70.093	ENSAOCG00000014097	xrn1	86	85.246	Amphiprion_ocellaris
ENSAMEG00000012538	XRN1	100	61.002	ENSAPEG00000006620	xrn1	91	72.298	Amphiprion_percula
ENSAMEG00000012538	XRN1	91	70.952	ENSATEG00000009752	xrn1	96	70.863	Anabas_testudineus
ENSAMEG00000012538	XRN1	99	76.794	ENSAPLG00000004905	XRN1	100	76.273	Anas_platyrhynchos
ENSAMEG00000012538	XRN1	100	72.978	ENSACAG00000004985	XRN1	100	72.472	Anolis_carolinensis
ENSAMEG00000012538	XRN1	100	91.354	ENSANAG00000029013	XRN1	99	95.951	Aotus_nancymaae
ENSAMEG00000012538	XRN1	100	60.222	ENSACLG00000004806	xrn1	96	61.503	Astatotilapia_calliptera
ENSAMEG00000012538	XRN1	99	59.886	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSAMEG00000012538	XRN1	100	91.476	ENSBTAG00000011524	XRN1	100	91.476	Bos_taurus
ENSAMEG00000012538	XRN1	70	38.737	WBGene00012730	xrn-1	80	38.995	Caenorhabditis_elegans
ENSAMEG00000012538	XRN1	100	91.009	ENSCJAG00000001872	XRN1	100	91.009	Callithrix_jacchus
ENSAMEG00000012538	XRN1	100	97.233	ENSCAFG00000007783	XRN1	100	97.233	Canis_familiaris
ENSAMEG00000012538	XRN1	100	97.233	ENSCAFG00020009120	XRN1	99	98.813	Canis_lupus_dingo
ENSAMEG00000012538	XRN1	99	93.869	ENSCHIG00000019192	XRN1	99	93.696	Capra_hircus
ENSAMEG00000012538	XRN1	100	91.532	ENSTSYG00000002705	XRN1	100	91.532	Carlito_syrichta
ENSAMEG00000012538	XRN1	54	76.285	ENSCAPG00000004604	-	99	76.285	Cavia_aperea
ENSAMEG00000012538	XRN1	100	91.758	ENSCCAG00000034800	XRN1	99	97.147	Cebus_capucinus
ENSAMEG00000012538	XRN1	100	91.988	ENSCATG00000041794	XRN1	100	91.988	Cercocebus_atys
ENSAMEG00000012538	XRN1	100	89.261	ENSCLAG00000001451	XRN1	99	95.563	Chinchilla_lanigera
ENSAMEG00000012538	XRN1	100	91.304	ENSCSAG00000011265	XRN1	100	91.304	Chlorocebus_sabaeus
ENSAMEG00000012538	XRN1	57	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSAMEG00000012538	XRN1	69	45.179	ENSCSAVG00000008584	-	98	44.868	Ciona_savignyi
ENSAMEG00000012538	XRN1	100	92.277	ENSCANG00000037495	XRN1	99	97.329	Colobus_angolensis_palliatus
ENSAMEG00000012538	XRN1	100	89.562	ENSCGRG00001019411	Xrn1	99	95.563	Cricetulus_griseus_chok1gshd
ENSAMEG00000012538	XRN1	100	89.562	ENSCGRG00000012464	Xrn1	99	95.563	Cricetulus_griseus_crigri
ENSAMEG00000012538	XRN1	92	67.097	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSAMEG00000012538	XRN1	66	71.944	ENSCVAG00000013089	xrn1	99	72.208	Cyprinodon_variegatus
ENSAMEG00000012538	XRN1	99	61.953	ENSDARG00000091652	xrn1	98	79.114	Danio_rerio
ENSAMEG00000012538	XRN1	100	87.486	ENSDORG00000013833	Xrn1	100	87.543	Dipodomys_ordii
ENSAMEG00000012538	XRN1	73	39.457	FBgn0020261	pcm	72	40.538	Drosophila_melanogaster
ENSAMEG00000012538	XRN1	86	97.368	ENSETEG00000003978	XRN1	88	96.850	Echinops_telfairi
ENSAMEG00000012538	XRN1	100	94.121	ENSEASG00005002687	XRN1	99	97.329	Equus_asinus_asinus
ENSAMEG00000012538	XRN1	100	91.533	ENSECAG00000008301	XRN1	100	91.533	Equus_caballus
ENSAMEG00000012538	XRN1	92	82.943	ENSEEUG00000011323	XRN1	92	82.943	Erinaceus_europaeus
ENSAMEG00000012538	XRN1	100	61.161	ENSELUG00000000169	xrn1	96	62.031	Esox_lucius
ENSAMEG00000012538	XRN1	100	89.862	ENSFCAG00000027589	XRN1	99	97.143	Felis_catus
ENSAMEG00000012538	XRN1	100	75.406	ENSFALG00000007021	XRN1	100	74.622	Ficedula_albicollis
ENSAMEG00000012538	XRN1	100	89.862	ENSFDAG00000020494	XRN1	99	95.087	Fukomys_damarensis
ENSAMEG00000012538	XRN1	82	68.030	ENSGMOG00000006396	xrn1	80	67.529	Gadus_morhua
ENSAMEG00000012538	XRN1	100	75.659	ENSGALG00000002706	XRN1	100	75.154	Gallus_gallus
ENSAMEG00000012538	XRN1	100	60.418	ENSGACG00000014328	xrn1	96	61.721	Gasterosteus_aculeatus
ENSAMEG00000012538	XRN1	95	79.122	ENSGAGG00000017535	XRN1	99	78.640	Gopherus_agassizii
ENSAMEG00000012538	XRN1	100	91.470	ENSGGOG00000008047	XRN1	100	91.470	Gorilla_gorilla
ENSAMEG00000012538	XRN1	94	70.166	ENSHBUG00000005908	xrn1	98	72.746	Haplochromis_burtoni
ENSAMEG00000012538	XRN1	100	90.846	ENSHGLG00000014476	XRN1	99	95.880	Heterocephalus_glaber_female
ENSAMEG00000012538	XRN1	100	90.904	ENSHGLG00100015130	XRN1	99	95.880	Heterocephalus_glaber_male
ENSAMEG00000012538	XRN1	94	70.024	ENSHCOG00000014062	xrn1	97	69.786	Hippocampus_comes
ENSAMEG00000012538	XRN1	99	61.011	ENSIPUG00000015229	xrn1	99	61.033	Ictalurus_punctatus
ENSAMEG00000012538	XRN1	100	93.203	ENSSTOG00000013552	XRN1	99	97.329	Ictidomys_tridecemlineatus
ENSAMEG00000012538	XRN1	98	88.225	ENSJJAG00000010863	Xrn1	99	93.769	Jaculus_jaculus
ENSAMEG00000012538	XRN1	94	61.371	ENSKMAG00000021356	xrn1	94	74.843	Kryptolebias_marmoratus
ENSAMEG00000012538	XRN1	94	69.773	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSAMEG00000012538	XRN1	100	69.694	ENSLACG00000009020	XRN1	97	70.588	Latimeria_chalumnae
ENSAMEG00000012538	XRN1	100	64.686	ENSLOCG00000007944	xrn1	98	64.794	Lepisosteus_oculatus
ENSAMEG00000012538	XRN1	62	96.175	ENSLAFG00000015426	XRN1	100	96.175	Loxodonta_africana
ENSAMEG00000012538	XRN1	100	92.104	ENSMFAG00000032599	XRN1	100	92.104	Macaca_fascicularis
ENSAMEG00000012538	XRN1	100	92.046	ENSMMUG00000014038	XRN1	100	92.046	Macaca_mulatta
ENSAMEG00000012538	XRN1	100	91.873	ENSMNEG00000034217	XRN1	100	91.873	Macaca_nemestrina
ENSAMEG00000012538	XRN1	92	70.597	ENSMAMG00000013219	xrn1	94	76.844	Mastacembelus_armatus
ENSAMEG00000012538	XRN1	100	60.111	ENSMZEG00005015099	xrn1	96	61.386	Maylandia_zebra
ENSAMEG00000012538	XRN1	99	75.884	ENSMGAG00000006333	XRN1	100	75.420	Meleagris_gallopavo
ENSAMEG00000012538	XRN1	100	91.777	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSAMEG00000012538	XRN1	56	94.295	ENSMOCG00000008665	Xrn1	99	94.295	Microtus_ochrogaster
ENSAMEG00000012538	XRN1	100	79.886	ENSMODG00000021236	XRN1	100	79.361	Monodelphis_domestica
ENSAMEG00000012538	XRN1	94	66.589	ENSMALG00000004098	xrn1	94	66.406	Monopterus_albus
ENSAMEG00000012538	XRN1	96	94.471	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSAMEG00000012538	XRN1	100	88.266	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSAMEG00000012538	XRN1	100	88.324	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSAMEG00000012538	XRN1	100	88.324	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSAMEG00000012538	XRN1	100	93.993	ENSMPUG00000012040	XRN1	100	93.993	Mustela_putorius_furo
ENSAMEG00000012538	XRN1	100	92.379	ENSMLUG00000016885	XRN1	100	92.206	Myotis_lucifugus
ENSAMEG00000012538	XRN1	57	91.125	ENSNGAG00000023964	Xrn1	99	91.125	Nannospalax_galili
ENSAMEG00000012538	XRN1	100	91.700	ENSNLEG00000004726	XRN1	100	91.700	Nomascus_leucogenys
ENSAMEG00000012538	XRN1	71	98.969	ENSMEUG00000014473	-	73	99.029	Notamacropus_eugenii
ENSAMEG00000012538	XRN1	79	84.320	ENSOPRG00000007337	-	78	84.320	Ochotona_princeps
ENSAMEG00000012538	XRN1	100	61.425	ENSONIG00000016673	xrn1	99	64.137	Oreochromis_niloticus
ENSAMEG00000012538	XRN1	92	75.903	ENSOANG00000006735	XRN1	100	75.716	Ornithorhynchus_anatinus
ENSAMEG00000012538	XRN1	100	91.195	ENSOCUG00000001861	XRN1	100	91.023	Oryctolagus_cuniculus
ENSAMEG00000012538	XRN1	94	71.885	ENSORLG00000013005	xrn1	93	72.204	Oryzias_latipes
ENSAMEG00000012538	XRN1	94	72.298	ENSORLG00020005559	xrn1	93	72.284	Oryzias_latipes_hni
ENSAMEG00000012538	XRN1	100	60.970	ENSORLG00015022523	xrn1	89	72.125	Oryzias_latipes_hsok
ENSAMEG00000012538	XRN1	93	72.587	ENSOMEG00000015397	xrn1	100	72.786	Oryzias_melastigma
ENSAMEG00000012538	XRN1	100	88.050	ENSOGAG00000000170	XRN1	100	88.050	Otolemur_garnettii
ENSAMEG00000012538	XRN1	99	93.528	ENSOARG00000006343	XRN1	99	93.356	Ovis_aries
ENSAMEG00000012538	XRN1	100	91.522	ENSPPAG00000010180	XRN1	100	91.522	Pan_paniscus
ENSAMEG00000012538	XRN1	100	94.067	ENSPPRG00000007125	XRN1	100	94.067	Panthera_pardus
ENSAMEG00000012538	XRN1	100	94.124	ENSPTIG00000021081	XRN1	100	94.124	Panthera_tigris_altaica
ENSAMEG00000012538	XRN1	100	91.580	ENSPTRG00000015482	XRN1	100	91.580	Pan_troglodytes
ENSAMEG00000012538	XRN1	100	91.931	ENSPANG00000010638	XRN1	100	91.931	Papio_anubis
ENSAMEG00000012538	XRN1	100	77.550	ENSPSIG00000018050	XRN1	100	77.195	Pelodiscus_sinensis
ENSAMEG00000012538	XRN1	56	77.394	ENSPMGG00000002648	xrn1	98	77.865	Periophthalmus_magnuspinnatus
ENSAMEG00000012538	XRN1	56	95.246	ENSPEMG00000020610	Xrn1	99	95.246	Peromyscus_maniculatus_bairdii
ENSAMEG00000012538	XRN1	64	50.126	ENSPMAG00000002975	xrn1	91	77.586	Petromyzon_marinus
ENSAMEG00000012538	XRN1	95	87.638	ENSPCIG00000028735	XRN1	99	89.604	Phascolarctos_cinereus
ENSAMEG00000012538	XRN1	91	63.430	ENSPFOG00000013932	xrn1	99	63.505	Poecilia_formosa
ENSAMEG00000012538	XRN1	91	62.407	ENSPLAG00000021653	xrn1	99	62.942	Poecilia_latipinna
ENSAMEG00000012538	XRN1	89	63.094	ENSPMEG00000003076	xrn1	95	63.228	Poecilia_mexicana
ENSAMEG00000012538	XRN1	95	69.497	ENSPREG00000021147	xrn1	96	69.418	Poecilia_reticulata
ENSAMEG00000012538	XRN1	100	90.675	ENSPPYG00000014172	XRN1	100	90.675	Pongo_abelii
ENSAMEG00000012538	XRN1	88	81.920	ENSPCAG00000005638	XRN1	96	81.920	Procavia_capensis
ENSAMEG00000012538	XRN1	100	91.820	ENSPCOG00000013089	XRN1	99	97.626	Propithecus_coquereli
ENSAMEG00000012538	XRN1	94	92.913	ENSPVAG00000016265	XRN1	96	92.913	Pteropus_vampyrus
ENSAMEG00000012538	XRN1	94	71.271	ENSPNYG00000010570	xrn1	93	71.113	Pundamilia_nyererei
ENSAMEG00000012538	XRN1	99	60.161	ENSPNAG00000023531	xrn1	97	60.795	Pygocentrus_nattereri
ENSAMEG00000012538	XRN1	100	88.754	ENSRNOG00000042951	Xrn1	100	88.639	Rattus_norvegicus
ENSAMEG00000012538	XRN1	100	91.239	ENSRBIG00000041227	XRN1	100	91.239	Rhinopithecus_bieti
ENSAMEG00000012538	XRN1	66	53.951	YGL173C	XRN1	73	53.951	Saccharomyces_cerevisiae
ENSAMEG00000012538	XRN1	100	91.124	ENSSBOG00000029561	XRN1	100	91.124	Saimiri_boliviensis_boliviensis
ENSAMEG00000012538	XRN1	99	81.257	ENSSHAG00000016207	XRN1	100	80.664	Sarcophilus_harrisii
ENSAMEG00000012538	XRN1	100	61.044	ENSSFOG00015024211	xrn1	97	62.043	Scleropages_formosus
ENSAMEG00000012538	XRN1	91	72.039	ENSSMAG00000016534	xrn1	94	71.958	Scophthalmus_maximus
ENSAMEG00000012538	XRN1	88	72.159	ENSSDUG00000010306	xrn1	92	72.159	Seriola_dumerili
ENSAMEG00000012538	XRN1	94	69.243	ENSSLDG00000021543	xrn1	96	71.644	Seriola_lalandi_dorsalis
ENSAMEG00000012538	XRN1	65	85.315	ENSSARG00000007741	-	81	85.315	Sorex_araneus
ENSAMEG00000012538	XRN1	100	76.795	ENSTGUG00000008498	XRN1	100	76.048	Taeniopygia_guttata
ENSAMEG00000012538	XRN1	94	69.500	ENSTRUG00000004895	xrn1	96	76.618	Takifugu_rubripes
ENSAMEG00000012538	XRN1	100	57.577	ENSTNIG00000017615	xrn1	96	58.830	Tetraodon_nigroviridis
ENSAMEG00000012538	XRN1	85	96.226	ENSTBEG00000003256	XRN1	84	96.226	Tupaia_belangeri
ENSAMEG00000012538	XRN1	100	88.215	ENSTTRG00000012914	XRN1	100	88.215	Tursiops_truncatus
ENSAMEG00000012538	XRN1	100	96.880	ENSUAMG00000001608	XRN1	99	98.813	Ursus_americanus
ENSAMEG00000012538	XRN1	100	98.444	ENSUMAG00000013625	XRN1	100	98.444	Ursus_maritimus
ENSAMEG00000012538	XRN1	100	89.302	ENSVPAG00000004690	XRN1	100	89.302	Vicugna_pacos
ENSAMEG00000012538	XRN1	100	97.349	ENSVVUG00000024461	XRN1	99	98.813	Vulpes_vulpes
ENSAMEG00000012538	XRN1	100	67.063	ENSXETG00000000619	xrn1	97	87.903	Xenopus_tropicalis
ENSAMEG00000012538	XRN1	94	72.358	ENSXCOG00000007917	xrn1	92	72.358	Xiphophorus_couchianus
ENSAMEG00000012538	XRN1	93	71.707	ENSXMAG00000018320	xrn1	94	71.789	Xiphophorus_maculatus