EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMEG00000016174 (Gene tree)
Gene ID: 100467671
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Plus strand
Length: 21129 bases
Position: chrGL192835.1:1183692-1204820
Accession: 9348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000017084	zf-C2H2	PF00096.26	3.1e-19	1	2
ENSAMEP00000017084	zf-C2H2	PF00096.26	3.1e-19	2	2
ENSAMEP00000017084	zf-met	PF12874.7	2.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000017784	PRDM4-201	2409	-	ENSAMEP00000017084	802 (aa)	-	G1MCK6

Gene Model

Click here to download ENSAMEG00000016174's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000016174's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMEG00000016174	PRDM4	50	32.727	ENSAMEG00000002162	PRDM15	55	31.651
ENSAMEG00000016174	PRDM4	50	34.118	ENSAMEG00000002425	PRDM10	52	36.054

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000016174	PRDM4	99	97.372	ENSG00000110851	PRDM4	99	97.372	Homo_sapiens
ENSAMEG00000016174	PRDM4	99	87.109	ENSAPLG00000009846	PRDM4	99	86.859	Anas_platyrhynchos
ENSAMEG00000016174	PRDM4	99	97.247	ENSANAG00000024800	PRDM4	99	97.247	Aotus_nancymaae
ENSAMEG00000016174	PRDM4	99	97.372	ENSBTAG00000012999	PRDM4	99	97.372	Bos_taurus
ENSAMEG00000016174	PRDM4	99	96.746	ENSCJAG00000015261	PRDM4	99	96.746	Callithrix_jacchus
ENSAMEG00000016174	PRDM4	100	98.005	ENSCAFG00000001788	PRDM4	100	98.005	Canis_familiaris
ENSAMEG00000016174	PRDM4	99	98.498	ENSCAFG00020004916	PRDM4	99	98.498	Canis_lupus_dingo
ENSAMEG00000016174	PRDM4	99	97.372	ENSCHIG00000019409	PRDM4	99	97.372	Capra_hircus
ENSAMEG00000016174	PRDM4	99	97.497	ENSTSYG00000009248	PRDM4	99	97.497	Carlito_syrichta
ENSAMEG00000016174	PRDM4	99	90.750	ENSCAPG00000013937	PRDM4	99	91.000	Cavia_aperea
ENSAMEG00000016174	PRDM4	99	90.447	ENSCPOG00000022385	PRDM4	100	90.447	Cavia_porcellus
ENSAMEG00000016174	PRDM4	99	97.372	ENSCCAG00000036033	PRDM4	99	97.372	Cebus_capucinus
ENSAMEG00000016174	PRDM4	99	96.996	ENSCATG00000044797	PRDM4	99	96.996	Cercocebus_atys
ENSAMEG00000016174	PRDM4	99	92.671	ENSCLAG00000007545	PRDM4	100	92.919	Chinchilla_lanigera
ENSAMEG00000016174	PRDM4	99	97.247	ENSCSAG00000002896	PRDM4	99	97.247	Chlorocebus_sabaeus
ENSAMEG00000016174	PRDM4	75	97.196	ENSCHOG00000001744	PRDM4	85	97.196	Choloepus_hoffmanni
ENSAMEG00000016174	PRDM4	99	88.596	ENSCPBG00000023187	PRDM4	100	88.471	Chrysemys_picta_bellii
ENSAMEG00000016174	PRDM4	99	97.121	ENSCANG00000021804	PRDM4	99	97.121	Colobus_angolensis_palliatus
ENSAMEG00000016174	PRDM4	99	92.919	ENSCGRG00001015102	-	100	92.919	Cricetulus_griseus_chok1gshd
ENSAMEG00000016174	PRDM4	96	92.912	ENSCGRG00000004044	-	100	92.912	Cricetulus_griseus_crigri
ENSAMEG00000016174	PRDM4	99	96.370	ENSDNOG00000032478	PRDM4	99	96.695	Dasypus_novemcinctus
ENSAMEG00000016174	PRDM4	99	81.704	ENSDORG00000015081	-	100	81.955	Dipodomys_ordii
ENSAMEG00000016174	PRDM4	93	45.582	ENSEBUG00000003775	prdm4	99	45.994	Eptatretus_burgeri
ENSAMEG00000016174	PRDM4	99	97.747	ENSECAG00000015423	PRDM4	100	97.541	Equus_caballus
ENSAMEG00000016174	PRDM4	94	93.617	ENSEEUG00000006569	PRDM4	99	93.617	Erinaceus_europaeus
ENSAMEG00000016174	PRDM4	99	60.558	ENSELUG00000015265	prdm4	99	60.194	Esox_lucius
ENSAMEG00000016174	PRDM4	99	98.999	ENSFCAG00000022478	PRDM4	99	98.999	Felis_catus
ENSAMEG00000016174	PRDM4	99	87.594	ENSFALG00000013342	PRDM4	100	87.469	Ficedula_albicollis
ENSAMEG00000016174	PRDM4	100	86.692	ENSGALG00000012619	PRDM4	100	86.443	Gallus_gallus
ENSAMEG00000016174	PRDM4	100	88.030	ENSGAGG00000002763	PRDM4	95	87.905	Gopherus_agassizii
ENSAMEG00000016174	PRDM4	99	97.372	ENSGGOG00000001244	PRDM4	99	97.372	Gorilla_gorilla
ENSAMEG00000016174	PRDM4	99	93.484	ENSHGLG00000004590	PRDM4	98	93.609	Heterocephalus_glaber_female
ENSAMEG00000016174	PRDM4	99	92.432	ENSHGLG00100007464	PRDM4	100	92.556	Heterocephalus_glaber_male
ENSAMEG00000016174	PRDM4	95	60.931	ENSIPUG00000024162	prdm4	94	60.931	Ictalurus_punctatus
ENSAMEG00000016174	PRDM4	100	96.633	ENSSTOG00000016168	PRDM4	100	96.633	Ictidomys_tridecemlineatus
ENSAMEG00000016174	PRDM4	79	95.076	ENSJJAG00000022448	-	93	95.076	Jaculus_jaculus
ENSAMEG00000016174	PRDM4	99	72.435	ENSLACG00000007452	PRDM4	99	73.424	Latimeria_chalumnae
ENSAMEG00000016174	PRDM4	78	53.017	ENSLOCG00000017092	prdm4	100	53.017	Lepisosteus_oculatus
ENSAMEG00000016174	PRDM4	98	97.212	ENSLAFG00000001483	PRDM4	100	97.212	Loxodonta_africana
ENSAMEG00000016174	PRDM4	99	97.372	ENSMFAG00000041862	PRDM4	99	97.372	Macaca_fascicularis
ENSAMEG00000016174	PRDM4	100	97.132	ENSMMUG00000015550	PRDM4	99	97.372	Macaca_mulatta
ENSAMEG00000016174	PRDM4	99	97.121	ENSMNEG00000032319	PRDM4	99	97.121	Macaca_nemestrina
ENSAMEG00000016174	PRDM4	99	97.247	ENSMLEG00000039607	PRDM4	99	97.247	Mandrillus_leucophaeus
ENSAMEG00000016174	PRDM4	99	79.775	ENSMGAG00000012815	PRDM4	100	79.526	Meleagris_gallopavo
ENSAMEG00000016174	PRDM4	99	96.370	ENSMICG00000007807	PRDM4	99	96.370	Microcebus_murinus
ENSAMEG00000016174	PRDM4	100	93.142	ENSMOCG00000000753	Prdm4	99	93.392	Microtus_ochrogaster
ENSAMEG00000016174	PRDM4	99	94.110	ENSMUSG00000035529	Prdm4	100	94.236	Mus_musculus
ENSAMEG00000016174	PRDM4	99	93.609	MGP_PahariEiJ_G0031398	Prdm4	100	93.655	Mus_pahari
ENSAMEG00000016174	PRDM4	99	94.862	MGP_SPRETEiJ_G0016505	Prdm4	100	94.924	Mus_spretus
ENSAMEG00000016174	PRDM4	100	93.168	ENSMPUG00000012238	PRDM4	100	92.422	Mustela_putorius_furo
ENSAMEG00000016174	PRDM4	100	97.382	ENSMLUG00000000767	PRDM4	100	97.382	Myotis_lucifugus
ENSAMEG00000016174	PRDM4	99	95.614	ENSNGAG00000018627	Prdm4	100	95.614	Nannospalax_galili
ENSAMEG00000016174	PRDM4	99	97.247	ENSNLEG00000006748	PRDM4	99	97.247	Nomascus_leucogenys
ENSAMEG00000016174	PRDM4	89	89.227	ENSMEUG00000004495	PRDM4	89	89.227	Notamacropus_eugenii
ENSAMEG00000016174	PRDM4	88	94.609	ENSOPRG00000010192	PRDM4	89	94.609	Ochotona_princeps
ENSAMEG00000016174	PRDM4	99	90.727	ENSODEG00000014750	PRDM4	99	90.852	Octodon_degus
ENSAMEG00000016174	PRDM4	99	91.114	ENSOANG00000005526	PRDM4	99	91.114	Ornithorhynchus_anatinus
ENSAMEG00000016174	PRDM4	93	97.000	ENSOCUG00000012859	PRDM4	96	97.000	Oryctolagus_cuniculus
ENSAMEG00000016174	PRDM4	99	97.368	ENSOGAG00000011945	PRDM4	100	97.368	Otolemur_garnettii
ENSAMEG00000016174	PRDM4	99	97.247	ENSOARG00000017955	PRDM4	99	97.247	Ovis_aries
ENSAMEG00000016174	PRDM4	99	97.372	ENSPPAG00000038438	PRDM4	99	97.372	Pan_paniscus
ENSAMEG00000016174	PRDM4	99	98.999	ENSPPRG00000004144	PRDM4	99	98.999	Panthera_pardus
ENSAMEG00000016174	PRDM4	99	98.999	ENSPTIG00000005847	PRDM4	99	98.999	Panthera_tigris_altaica
ENSAMEG00000016174	PRDM4	99	97.372	ENSPTRG00000005400	PRDM4	99	97.372	Pan_troglodytes
ENSAMEG00000016174	PRDM4	99	97.372	ENSPANG00000022084	PRDM4	99	97.372	Papio_anubis
ENSAMEG00000016174	PRDM4	99	60.333	ENSPKIG00000000875	prdm4	99	59.739	Paramormyrops_kingsleyae
ENSAMEG00000016174	PRDM4	91	81.973	ENSPSIG00000012066	PRDM4	100	81.973	Pelodiscus_sinensis
ENSAMEG00000016174	PRDM4	99	94.862	ENSPEMG00000014598	Prdm4	100	94.862	Peromyscus_maniculatus_bairdii
ENSAMEG00000016174	PRDM4	99	89.152	ENSPCIG00000009471	PRDM4	99	89.152	Phascolarctos_cinereus
ENSAMEG00000016174	PRDM4	99	97.497	ENSPPYG00000004913	PRDM4	99	97.497	Pongo_abelii
ENSAMEG00000016174	PRDM4	83	97.778	ENSPCAG00000009987	PRDM4	83	97.778	Procavia_capensis
ENSAMEG00000016174	PRDM4	99	96.370	ENSPCOG00000021060	PRDM4	99	96.370	Propithecus_coquereli
ENSAMEG00000016174	PRDM4	99	97.000	ENSPVAG00000001596	PRDM4	99	97.000	Pteropus_vampyrus
ENSAMEG00000016174	PRDM4	99	93.992	ENSRNOG00000004962	Prdm4	100	93.867	Rattus_norvegicus
ENSAMEG00000016174	PRDM4	99	97.121	ENSRBIG00000035488	PRDM4	99	97.121	Rhinopithecus_bieti
ENSAMEG00000016174	PRDM4	99	97.247	ENSRROG00000012779	PRDM4	99	97.247	Rhinopithecus_roxellana
ENSAMEG00000016174	PRDM4	99	97.247	ENSSBOG00000000403	PRDM4	99	97.247	Saimiri_boliviensis_boliviensis
ENSAMEG00000016174	PRDM4	99	63.882	ENSSFOG00015023358	prdm4	99	62.854	Scleropages_formosus
ENSAMEG00000016174	PRDM4	99	97.747	ENSSSCG00000000160	PRDM4	99	97.747	Sus_scrofa
ENSAMEG00000016174	PRDM4	100	87.406	ENSTGUG00000010962	-	100	87.282	Taeniopygia_guttata
ENSAMEG00000016174	PRDM4	73	89.949	ENSTBEG00000001732	PRDM4	84	89.949	Tupaia_belangeri
ENSAMEG00000016174	PRDM4	99	96.871	ENSTTRG00000011056	PRDM4	99	96.871	Tursiops_truncatus
ENSAMEG00000016174	PRDM4	99	99.124	ENSUAMG00000022796	PRDM4	99	99.124	Ursus_americanus
ENSAMEG00000016174	PRDM4	99	99.124	ENSUMAG00000017231	PRDM4	99	99.124	Ursus_maritimus
ENSAMEG00000016174	PRDM4	99	97.995	ENSVPAG00000002215	PRDM4	100	97.995	Vicugna_pacos
ENSAMEG00000016174	PRDM4	99	98.498	ENSVVUG00000023397	PRDM4	99	98.498	Vulpes_vulpes