EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMEG00000016265 (Gene tree)
Gene ID: 100473041
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Plus strand
Length: 367485 bases
Position: chrGL193146.1:276943-644427
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000017219	RNA_pol_Rpb1_5	PF04998.17	5.5e-101	1	1
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	1	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	2	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	3	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	4	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	5	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	6	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	7	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	8	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	9	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	10	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	11	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	12	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	13	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	14	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	15	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	16	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	17	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	18	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	19	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	20	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	21	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	22	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	23	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	24	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	25	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	26	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	27	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	28	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	29	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	30	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	31	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	32	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	33	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	34	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	35	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	36	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	37	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	38	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	39	40
ENSAMEP00000017219	RNA_pol_Rpb1_R	PF05001.13	1.1e-29	40	40
ENSAMEP00000017219	RNA_pol_Rpb1_4	PF05000.17	3.1e-38	1	1
ENSAMEP00000017219	RNA_pol_Rpb1_2	PF00623.20	9.9e-75	1	1
ENSAMEP00000017219	RNA_pol_Rpb1_3	PF04983.18	2.4e-49	1	1
ENSAMEP00000017219	RNA_pol_Rpb1_1	PF04997.12	4.3e-109	1	1
ENSAMEP00000017219	RNA_pol_Rpb1_7	PF04990.12	1.8e-54	1	1
ENSAMEP00000017219	RNA_pol_Rpb1_6	PF04992.14	1.2e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000017925	-	5922	-	ENSAMEP00000017219	1973 (aa)	-	G1MCZ1
ENSAMET00000017886	-	1833	-	ENSAMEP00000017181	611 (aa)	-	G1MCV3
ENSAMET00000017876	-	1953	-	ENSAMEP00000017171	651 (aa)	-	G1MCU3
ENSAMET00000017877	-	945	-	ENSAMEP00000017172	315 (aa)	-	G1MCU4

Gene Model

Click here to download ENSAMEG00000016265's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml03020	RNA polymerase	KEGG
aml05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000016265's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMEG00000016265	-	66	38.394	ENSAMEG00000017801	POLR3A	91	38.251
ENSAMEG00000016265	-	59	35.238	ENSAMEG00000005807	POLR1A	69	35.238

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000016265	-	82	94.121	ENSAPOG00000006552	polr2a	91	94.114	Acanthochromis_polyacanthus
ENSAMEG00000016265	-	82	92.141	ENSACIG00000015982	polr2a	81	92.131	Amphilophus_citrinellus
ENSAMEG00000016265	-	97	92.079	ENSAOCG00000004255	polr2a	96	92.069	Amphiprion_ocellaris
ENSAMEG00000016265	-	82	94.183	ENSAPEG00000012623	polr2a	82	94.176	Amphiprion_percula
ENSAMEG00000016265	-	82	94.059	ENSATEG00000019644	polr2a	82	94.052	Anabas_testudineus
ENSAMEG00000016265	-	100	98.226	ENSACAG00000014561	POLR2A	100	98.226	Anolis_carolinensis
ENSAMEG00000016265	-	100	99.696	ENSANAG00000020093	-	100	99.696	Aotus_nancymaae
ENSAMEG00000016265	-	82	93.874	ENSACLG00000006735	polr2a	82	93.866	Astatotilapia_calliptera
ENSAMEG00000016265	-	82	94.431	ENSAMXG00000020046	polr2a	82	94.424	Astyanax_mexicanus
ENSAMEG00000016265	-	100	99.645	ENSBTAG00000046765	POLR2A	100	99.645	Bos_taurus
ENSAMEG00000016265	-	94	69.712	WBGene00000123	ama-1	99	72.727	Caenorhabditis_elegans
ENSAMEG00000016265	-	100	99.341	ENSCAFG00000016532	POLR2A	100	99.498	Canis_familiaris
ENSAMEG00000016265	-	100	98.835	ENSCAFG00020007929	-	100	98.835	Canis_lupus_dingo
ENSAMEG00000016265	-	100	99.645	ENSCHIG00000027173	-	100	99.645	Capra_hircus
ENSAMEG00000016265	-	100	97.111	ENSTSYG00000012803	-	100	97.719	Carlito_syrichta
ENSAMEG00000016265	-	98	95.394	ENSCAPG00000001882	-	98	98.293	Cavia_aperea
ENSAMEG00000016265	-	100	95.472	ENSCPOG00000014812	-	98	98.326	Cavia_porcellus
ENSAMEG00000016265	-	100	99.696	ENSCCAG00000020938	-	100	99.696	Cebus_capucinus
ENSAMEG00000016265	-	100	99.645	ENSCATG00000013680	-	100	99.645	Cercocebus_atys
ENSAMEG00000016265	-	100	99.544	ENSCLAG00000012196	-	100	99.544	Chinchilla_lanigera
ENSAMEG00000016265	-	82	90.394	ENSCSAG00000011644	-	82	90.394	Chlorocebus_sabaeus
ENSAMEG00000016265	-	100	93.715	ENSCPBG00000012697	POLR2A	100	93.715	Chrysemys_picta_bellii
ENSAMEG00000016265	-	99	76.274	ENSCING00000007884	-	99	76.533	Ciona_intestinalis
ENSAMEG00000016265	-	95	83.333	ENSCSAVG00000008334	-	99	83.871	Ciona_savignyi
ENSAMEG00000016265	-	100	98.986	ENSCANG00000010622	-	100	98.986	Colobus_angolensis_palliatus
ENSAMEG00000016265	-	100	90.813	ENSCGRG00001003538	Polr2a	100	94.419	Cricetulus_griseus_chok1gshd
ENSAMEG00000016265	-	82	95.951	ENSCGRG00000012105	Polr2a	95	95.890	Cricetulus_griseus_crigri
ENSAMEG00000016265	-	82	93.441	ENSCSEG00000002635	polr2a	82	93.432	Cynoglossus_semilaevis
ENSAMEG00000016265	-	82	94.307	ENSCVAG00000005156	polr2a	82	94.300	Cyprinodon_variegatus
ENSAMEG00000016265	-	82	94.125	ENSDARG00000099966	polr2a	82	94.118	Danio_rerio
ENSAMEG00000016265	-	100	96.706	ENSDNOG00000016482	-	100	96.706	Dasypus_novemcinctus
ENSAMEG00000016265	-	100	99.696	ENSDORG00000008667	Polr2a	100	99.696	Dipodomys_ordii
ENSAMEG00000016265	-	99	69.778	FBgn0003277	RpII215	99	74.564	Drosophila_melanogaster
ENSAMEG00000016265	-	94	87.707	ENSETEG00000002540	-	94	84.348	Echinops_telfairi
ENSAMEG00000016265	-	81	87.796	ENSEBUG00000013967	polr2a	82	87.205	Eptatretus_burgeri
ENSAMEG00000016265	-	100	96.706	ENSEASG00005019114	-	100	96.807	Equus_asinus_asinus
ENSAMEG00000016265	-	100	99.645	ENSECAG00000018485	POLR2A	100	99.645	Equus_caballus
ENSAMEG00000016265	-	87	99.599	ENSEEUG00000001154	-	95	99.599	Erinaceus_europaeus
ENSAMEG00000016265	-	89	89.729	ENSELUG00000014284	polr2a	84	90.456	Esox_lucius
ENSAMEG00000016265	-	100	99.645	ENSFDAG00000008287	-	100	99.645	Fukomys_damarensis
ENSAMEG00000016265	-	85	94.307	ENSFHEG00000001768	polr2a	98	94.300	Fundulus_heteroclitus
ENSAMEG00000016265	-	99	90.018	ENSGMOG00000007725	polr2a	100	100.000	Gadus_morhua
ENSAMEG00000016265	-	97	94.366	ENSGAFG00000005389	polr2a	99	92.069	Gambusia_affinis
ENSAMEG00000016265	-	99	90.404	ENSGACG00000019366	polr2a	100	87.915	Gasterosteus_aculeatus
ENSAMEG00000016265	-	100	97.876	ENSGGOG00000014800	-	100	97.876	Gorilla_gorilla
ENSAMEG00000016265	-	85	93.874	ENSHBUG00000018937	polr2a	98	93.866	Haplochromis_burtoni
ENSAMEG00000016265	-	100	99.645	ENSHGLG00000012381	POLR2A	100	99.645	Heterocephalus_glaber_female
ENSAMEG00000016265	-	100	99.645	ENSHGLG00100014843	POLR2A	100	99.645	Heterocephalus_glaber_male
ENSAMEG00000016265	-	82	93.688	ENSHCOG00000011874	polr2a	82	93.680	Hippocampus_comes
ENSAMEG00000016265	-	82	93.812	ENSIPUG00000002613	Polr2a	82	93.804	Ictalurus_punctatus
ENSAMEG00000016265	-	100	99.696	ENSSTOG00000001304	-	100	99.696	Ictidomys_tridecemlineatus
ENSAMEG00000016265	-	100	99.595	ENSJJAG00000013049	Polr2a	100	99.595	Jaculus_jaculus
ENSAMEG00000016265	-	80	85.006	ENSKMAG00000016343	polr2a	86	89.286	Kryptolebias_marmoratus
ENSAMEG00000016265	-	82	93.812	ENSLBEG00000027652	polr2a	82	93.804	Labrus_bergylta
ENSAMEG00000016265	-	80	86.869	ENSLACG00000012071	POLR2A	81	86.924	Latimeria_chalumnae
ENSAMEG00000016265	-	91	94.598	ENSLOCG00000013863	polr2a	99	94.296	Lepisosteus_oculatus
ENSAMEG00000016265	-	100	99.645	ENSLAFG00000008626	-	100	99.645	Loxodonta_africana
ENSAMEG00000016265	-	50	98.059	ENSMFAG00000007042	-	99	98.059	Macaca_fascicularis
ENSAMEG00000016265	-	100	99.645	ENSMMUG00000023620	-	100	99.645	Macaca_mulatta
ENSAMEG00000016265	-	100	98.939	ENSMNEG00000040407	-	100	98.939	Macaca_nemestrina
ENSAMEG00000016265	-	99	94.726	ENSMLEG00000030263	-	99	98.059	Mandrillus_leucophaeus
ENSAMEG00000016265	-	82	93.936	ENSMAMG00000003351	polr2a	82	93.928	Mastacembelus_armatus
ENSAMEG00000016265	-	82	93.874	ENSMZEG00005021429	polr2a	82	93.866	Maylandia_zebra
ENSAMEG00000016265	-	50	99.694	ENSMAUG00000021055	-	99	99.694	Mesocricetus_auratus
ENSAMEG00000016265	-	100	99.595	ENSMICG00000013372	-	100	99.595	Microcebus_murinus
ENSAMEG00000016265	-	100	92.836	ENSMOCG00000018279	Polr2a	100	93.139	Microtus_ochrogaster
ENSAMEG00000016265	-	87	93.441	ENSMMOG00000012515	polr2a	95	93.432	Mola_mola
ENSAMEG00000016265	-	100	99.392	ENSMODG00000007009	-	100	99.392	Monodelphis_domestica
ENSAMEG00000016265	-	94	91.291	ENSMALG00000008716	polr2a	99	92.007	Monopterus_albus
ENSAMEG00000016265	-	100	99.645	MGP_CAROLIEiJ_G0016587	Polr2a	100	99.645	Mus_caroli
ENSAMEG00000016265	-	100	99.645	ENSMUSG00000005198	Polr2a	100	99.645	Mus_musculus
ENSAMEG00000016265	-	100	97.879	MGP_PahariEiJ_G0017718	Polr2a	100	97.879	Mus_pahari
ENSAMEG00000016265	-	100	99.645	MGP_SPRETEiJ_G0017423	Polr2a	100	99.645	Mus_spretus
ENSAMEG00000016265	-	100	99.696	ENSMPUG00000009648	-	100	99.696	Mustela_putorius_furo
ENSAMEG00000016265	-	100	99.190	ENSMLUG00000009088	-	100	99.190	Myotis_lucifugus
ENSAMEG00000016265	-	100	99.696	ENSNGAG00000002543	Polr2a	100	99.696	Nannospalax_galili
ENSAMEG00000016265	-	82	91.832	ENSNBRG00000002005	polr2a	81	91.822	Neolamprologus_brichardi
ENSAMEG00000016265	-	100	98.483	ENSNLEG00000009460	-	100	98.483	Nomascus_leucogenys
ENSAMEG00000016265	-	94	99.455	ENSMEUG00000008611	-	93	99.455	Notamacropus_eugenii
ENSAMEG00000016265	-	80	99.496	ENSOPRG00000015116	-	99	99.496	Ochotona_princeps
ENSAMEG00000016265	-	82	94.059	ENSONIG00000009231	polr2a	82	94.052	Oreochromis_niloticus
ENSAMEG00000016265	-	100	97.112	ENSOCUG00000017929	-	100	97.429	Oryctolagus_cuniculus
ENSAMEG00000016265	-	82	93.936	ENSORLG00000006431	polr2a	82	93.928	Oryzias_latipes
ENSAMEG00000016265	-	82	93.936	ENSORLG00020010235	polr2a	82	93.928	Oryzias_latipes_hni
ENSAMEG00000016265	-	82	93.936	ENSORLG00015007075	polr2a	82	93.928	Oryzias_latipes_hsok
ENSAMEG00000016265	-	92	94.045	ENSOMEG00000010713	polr2a	100	94.045	Oryzias_melastigma
ENSAMEG00000016265	-	100	99.544	ENSOGAG00000033608	-	100	99.544	Otolemur_garnettii
ENSAMEG00000016265	-	98	99.472	ENSOARG00000013874	-	100	99.472	Ovis_aries
ENSAMEG00000016265	-	100	96.503	ENSPPAG00000043734	-	100	97.111	Pan_paniscus
ENSAMEG00000016265	-	100	98.483	ENSPTRG00000008691	POLR2A	100	98.483	Pan_troglodytes
ENSAMEG00000016265	-	100	98.986	ENSPANG00000024099	-	100	98.986	Papio_anubis
ENSAMEG00000016265	-	77	92.528	ENSPKIG00000005727	polr2a	85	82.000	Paramormyrops_kingsleyae
ENSAMEG00000016265	-	98	96.182	ENSPSIG00000014006	POLR2A	100	96.182	Pelodiscus_sinensis
ENSAMEG00000016265	-	100	93.871	ENSPMGG00000019734	polr2a	99	94.300	Periophthalmus_magnuspinnatus
ENSAMEG00000016265	-	100	99.696	ENSPEMG00000012521	Polr2a	100	99.696	Peromyscus_maniculatus_bairdii
ENSAMEG00000016265	-	96	87.173	ENSPCIG00000028851	-	96	87.173	Phascolarctos_cinereus
ENSAMEG00000016265	-	85	94.245	ENSPFOG00000007890	polr2a	99	94.238	Poecilia_formosa
ENSAMEG00000016265	-	85	94.245	ENSPLAG00000007399	polr2a	99	94.238	Poecilia_latipinna
ENSAMEG00000016265	-	85	94.245	ENSPMEG00000002071	polr2a	99	94.238	Poecilia_mexicana
ENSAMEG00000016265	-	82	94.183	ENSPREG00000013122	polr2a	82	94.176	Poecilia_reticulata
ENSAMEG00000016265	-	100	96.506	ENSPPYG00000007924	-	100	98.633	Pongo_abelii
ENSAMEG00000016265	-	92	99.474	ENSPCAG00000006951	-	92	99.474	Procavia_capensis
ENSAMEG00000016265	-	100	98.690	ENSPCOG00000025260	-	100	98.690	Propithecus_coquereli
ENSAMEG00000016265	-	100	99.442	ENSPVAG00000005069	-	100	99.442	Pteropus_vampyrus
ENSAMEG00000016265	-	82	94.290	ENSPNYG00000022340	polr2a	82	93.928	Pundamilia_nyererei
ENSAMEG00000016265	-	82	94.245	ENSPNAG00000011237	polr2a	82	94.238	Pygocentrus_nattereri
ENSAMEG00000016265	-	100	99.696	ENSRNOG00000028834	Polr2a	100	99.696	Rattus_norvegicus
ENSAMEG00000016265	-	82	99.195	ENSRBIG00000002471	-	100	96.249	Rhinopithecus_bieti
ENSAMEG00000016265	-	100	99.290	ENSRROG00000029583	-	100	99.290	Rhinopithecus_roxellana
ENSAMEG00000016265	-	83	88.000	YDL140C	RPO21	99	80.180	Saccharomyces_cerevisiae
ENSAMEG00000016265	-	100	99.696	ENSSBOG00000000808	-	100	99.696	Saimiri_boliviensis_boliviensis
ENSAMEG00000016265	-	92	99.257	ENSSHAG00000002858	-	84	99.257	Sarcophilus_harrisii
ENSAMEG00000016265	-	82	94.307	ENSSFOG00015023275	polr2a	82	94.300	Scleropages_formosus
ENSAMEG00000016265	-	82	93.688	ENSSMAG00000009137	polr2a	82	93.680	Scophthalmus_maximus
ENSAMEG00000016265	-	82	94.059	ENSSDUG00000020466	polr2a	82	94.052	Seriola_dumerili
ENSAMEG00000016265	-	82	94.059	ENSSLDG00000020613	polr2a	82	94.052	Seriola_lalandi_dorsalis
ENSAMEG00000016265	-	97	94.687	ENSSARG00000005875	-	99	94.687	Sorex_araneus
ENSAMEG00000016265	-	100	94.121	ENSSPAG00000016741	polr2a	94	94.114	Stegastes_partitus
ENSAMEG00000016265	-	100	98.936	ENSSSCG00000028278	-	100	98.936	Sus_scrofa
ENSAMEG00000016265	-	99	88.250	ENSTRUG00000012320	polr2a	81	88.235	Takifugu_rubripes
ENSAMEG00000016265	-	99	92.574	ENSTNIG00000010136	polr2a	100	92.565	Tetraodon_nigroviridis
ENSAMEG00000016265	-	77	100.000	ENSTBEG00000013294	-	58	100.000	Tupaia_belangeri
ENSAMEG00000016265	-	100	98.125	ENSTTRG00000014273	-	100	98.125	Tursiops_truncatus
ENSAMEG00000016265	-	96	96.539	ENSUAMG00000014866	-	100	99.320	Ursus_americanus
ENSAMEG00000016265	-	99	97.209	ENSUMAG00000015732	-	100	97.209	Ursus_maritimus
ENSAMEG00000016265	-	65	100.000	ENSVPAG00000008842	-	76	100.000	Vicugna_pacos
ENSAMEG00000016265	-	100	96.407	ENSVVUG00000027878	-	100	98.327	Vulpes_vulpes
ENSAMEG00000016265	-	99	96.822	ENSXETG00000012465	polr2a	100	96.822	Xenopus_tropicalis
ENSAMEG00000016265	-	90	92.105	ENSXCOG00000001804	polr2a	94	92.007	Xiphophorus_couchianus
ENSAMEG00000016265	-	82	94.183	ENSXMAG00000015687	polr2a	82	94.176	Xiphophorus_maculatus