EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMEG00000017420 (Gene tree)
Gene ID: 100482705
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Minus strand
Length: 70365 bases
Position: chrGL193317.1:424850-495214
Accession: 100482705
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000018418	RRM_1	PF00076.22	2e-32	1	2
ENSAMEP00000018418	RRM_1	PF00076.22	2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000019159	PSPC1-201	1566	-	ENSAMEP00000018418	521 (aa)	XP_002925711	D2HT12

Gene Model

Click here to download ENSAMEG00000017420's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000017420's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMEG00000017420	PSPC1	89	60.390	ENSAMEG00000016057	NONO	80	67.282
ENSAMEG00000017420	PSPC1	89	58.723	ENSAMEG00000000815	SFPQ	89	67.098

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000017420	PSPC1	100	98.662	ENSG00000121390	PSPC1	100	98.662	Homo_sapiens
ENSAMEG00000017420	PSPC1	88	70.650	ENSAPOG00000015946	pspc1	88	68.530	Acanthochromis_polyacanthus
ENSAMEG00000017420	PSPC1	88	62.208	ENSACIG00000018695	pspc1	87	59.660	Amphilophus_citrinellus
ENSAMEG00000017420	PSPC1	88	70.146	ENSAOCG00000005279	pspc1	87	68.116	Amphiprion_ocellaris
ENSAMEG00000017420	PSPC1	88	71.277	ENSAPEG00000015927	pspc1	88	68.116	Amphiprion_percula
ENSAMEG00000017420	PSPC1	88	58.085	ENSATEG00000004878	pspc1	76	62.350	Anabas_testudineus
ENSAMEG00000017420	PSPC1	89	60.944	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSAMEG00000017420	PSPC1	77	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSAMEG00000017420	PSPC1	89	91.631	ENSACAG00000002093	PSPC1	99	84.528	Anolis_carolinensis
ENSAMEG00000017420	PSPC1	90	52.500	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSAMEG00000017420	PSPC1	100	98.656	ENSANAG00000000059	PSPC1	100	98.656	Aotus_nancymaae
ENSAMEG00000017420	PSPC1	99	57.463	ENSACLG00000027220	pspc1	100	54.545	Astatotilapia_calliptera
ENSAMEG00000017420	PSPC1	88	68.542	ENSAMXG00000036881	pspc1	84	70.524	Astyanax_mexicanus
ENSAMEG00000017420	PSPC1	100	96.353	ENSBTAG00000003934	PSPC1	100	96.353	Bos_taurus
ENSAMEG00000017420	PSPC1	100	98.656	ENSCJAG00000004554	PSPC1	100	98.656	Callithrix_jacchus
ENSAMEG00000017420	PSPC1	100	99.616	ENSCAFG00020002009	PSPC1	100	99.616	Canis_lupus_dingo
ENSAMEG00000017420	PSPC1	100	96.353	ENSCHIG00000016708	PSPC1	100	96.353	Capra_hircus
ENSAMEG00000017420	PSPC1	77	92.040	ENSTSYG00000032882	PSPC1	93	85.748	Carlito_syrichta
ENSAMEG00000017420	PSPC1	100	97.121	ENSCPOG00000000395	PSPC1	100	97.121	Cavia_porcellus
ENSAMEG00000017420	PSPC1	100	98.656	ENSCCAG00000033498	PSPC1	100	98.656	Cebus_capucinus
ENSAMEG00000017420	PSPC1	100	98.470	ENSCATG00000036434	PSPC1	100	98.470	Cercocebus_atys
ENSAMEG00000017420	PSPC1	88	88.121	ENSCLAG00000005241	PSPC1	99	88.121	Chinchilla_lanigera
ENSAMEG00000017420	PSPC1	100	91.396	ENSCHOG00000008913	PSPC1	100	91.013	Choloepus_hoffmanni
ENSAMEG00000017420	PSPC1	99	86.692	ENSCPBG00000020859	PSPC1	99	88.031	Chrysemys_picta_bellii
ENSAMEG00000017420	PSPC1	59	58.766	ENSCSAVG00000003533	-	59	57.419	Ciona_savignyi
ENSAMEG00000017420	PSPC1	78	85.679	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSAMEG00000017420	PSPC1	100	96.941	ENSCGRG00001018368	Pspc1	100	96.941	Cricetulus_griseus_chok1gshd
ENSAMEG00000017420	PSPC1	100	96.941	ENSCGRG00000011724	Pspc1	100	96.941	Cricetulus_griseus_crigri
ENSAMEG00000017420	PSPC1	87	66.739	ENSCVAG00000007679	-	78	68.483	Cyprinodon_variegatus
ENSAMEG00000017420	PSPC1	99	66.854	ENSDARG00000006621	pspc1	100	67.150	Danio_rerio
ENSAMEG00000017420	PSPC1	100	96.558	ENSDNOG00000011078	PSPC1	100	96.558	Dasypus_novemcinctus
ENSAMEG00000017420	PSPC1	100	93.881	ENSDORG00000016050	Pspc1	100	93.308	Dipodomys_ordii
ENSAMEG00000017420	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSAMEG00000017420	PSPC1	62	45.087	ENSEBUG00000010133	pspc1	82	47.302	Eptatretus_burgeri
ENSAMEG00000017420	PSPC1	88	59.298	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSAMEG00000017420	PSPC1	100	98.464	ENSEASG00005000119	PSPC1	100	98.464	Equus_asinus_asinus
ENSAMEG00000017420	PSPC1	100	98.464	ENSECAG00000017286	PSPC1	100	98.464	Equus_caballus
ENSAMEG00000017420	PSPC1	73	93.443	ENSEEUG00000011288	-	88	82.500	Erinaceus_europaeus
ENSAMEG00000017420	PSPC1	99	65.193	ENSELUG00000003746	pspc1	94	71.501	Esox_lucius
ENSAMEG00000017420	PSPC1	100	99.424	ENSFCAG00000027841	PSPC1	100	99.424	Felis_catus
ENSAMEG00000017420	PSPC1	89	94.647	ENSFALG00000008750	PSPC1	99	87.954	Ficedula_albicollis
ENSAMEG00000017420	PSPC1	100	95.202	ENSFDAG00000002617	PSPC1	100	95.202	Fukomys_damarensis
ENSAMEG00000017420	PSPC1	88	66.953	ENSGMOG00000015074	pspc1	86	66.091	Gadus_morhua
ENSAMEG00000017420	PSPC1	88	95.238	ENSGALG00000017142	PSPC1	99	88.825	Gallus_gallus
ENSAMEG00000017420	PSPC1	62	78.154	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSAMEG00000017420	PSPC1	88	66.164	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSAMEG00000017420	PSPC1	91	59.583	ENSGAGG00000017325	-	58	67.105	Gopherus_agassizii
ENSAMEG00000017420	PSPC1	99	86.692	ENSGAGG00000019164	PSPC1	99	88.031	Gopherus_agassizii
ENSAMEG00000017420	PSPC1	100	98.470	ENSGGOG00000003414	PSPC1	100	98.470	Gorilla_gorilla
ENSAMEG00000017420	PSPC1	99	64.498	ENSHBUG00000001139	pspc1	100	64.126	Haplochromis_burtoni
ENSAMEG00000017420	PSPC1	100	97.505	ENSHGLG00000018811	PSPC1	100	97.505	Heterocephalus_glaber_female
ENSAMEG00000017420	PSPC1	67	93.103	ENSHGLG00100007962	PSPC1	100	93.103	Heterocephalus_glaber_male
ENSAMEG00000017420	PSPC1	73	70.757	ENSHCOG00000013251	pspc1	83	70.053	Hippocampus_comes
ENSAMEG00000017420	PSPC1	99	68.105	ENSIPUG00000013192	pspc1	100	67.917	Ictalurus_punctatus
ENSAMEG00000017420	PSPC1	100	97.897	ENSSTOG00000026833	PSPC1	100	97.897	Ictidomys_tridecemlineatus
ENSAMEG00000017420	PSPC1	100	97.132	ENSJJAG00000018334	Pspc1	100	97.132	Jaculus_jaculus
ENSAMEG00000017420	PSPC1	88	55.724	ENSKMAG00000013525	-	96	51.434	Kryptolebias_marmoratus
ENSAMEG00000017420	PSPC1	92	66.402	ENSLBEG00000004474	pspc1	78	71.198	Labrus_bergylta
ENSAMEG00000017420	PSPC1	99	76.394	ENSLACG00000010762	PSPC1	99	77.154	Latimeria_chalumnae
ENSAMEG00000017420	PSPC1	99	77.500	ENSLOCG00000010832	pspc1	99	77.500	Lepisosteus_oculatus
ENSAMEG00000017420	PSPC1	100	96.941	ENSLAFG00000010968	PSPC1	100	96.941	Loxodonta_africana
ENSAMEG00000017420	PSPC1	100	98.470	ENSMFAG00000032728	PSPC1	100	98.470	Macaca_fascicularis
ENSAMEG00000017420	PSPC1	100	98.470	ENSMMUG00000020262	PSPC1	100	98.470	Macaca_mulatta
ENSAMEG00000017420	PSPC1	100	98.470	ENSMNEG00000027401	PSPC1	100	98.470	Macaca_nemestrina
ENSAMEG00000017420	PSPC1	100	99.248	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSAMEG00000017420	PSPC1	88	67.835	ENSMAMG00000004333	pspc1	96	58.846	Mastacembelus_armatus
ENSAMEG00000017420	PSPC1	99	57.463	ENSMZEG00005005726	pspc1	100	54.545	Maylandia_zebra
ENSAMEG00000017420	PSPC1	78	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSAMEG00000017420	PSPC1	88	91.558	ENSMAUG00000021067	Pspc1	99	91.558	Mesocricetus_auratus
ENSAMEG00000017420	PSPC1	100	98.088	ENSMICG00000013970	PSPC1	100	98.088	Microcebus_murinus
ENSAMEG00000017420	PSPC1	100	96.941	ENSMOCG00000006060	Pspc1	100	96.941	Microtus_ochrogaster
ENSAMEG00000017420	PSPC1	88	43.927	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSAMEG00000017420	PSPC1	93	96.289	ENSMODG00000008029	PSPC1	78	96.289	Monodelphis_domestica
ENSAMEG00000017420	PSPC1	92	67.143	ENSMALG00000008914	pspc1	92	65.447	Monopterus_albus
ENSAMEG00000017420	PSPC1	100	96.947	MGP_CAROLIEiJ_G0019341	Pspc1	100	96.947	Mus_caroli
ENSAMEG00000017420	PSPC1	100	97.137	ENSMUSG00000021938	Pspc1	100	97.137	Mus_musculus
ENSAMEG00000017420	PSPC1	100	96.947	MGP_PahariEiJ_G0030359	Pspc1	100	96.947	Mus_pahari
ENSAMEG00000017420	PSPC1	100	96.947	MGP_SPRETEiJ_G0020232	Pspc1	100	96.947	Mus_spretus
ENSAMEG00000017420	PSPC1	100	99.424	ENSMPUG00000013347	PSPC1	100	99.424	Mustela_putorius_furo
ENSAMEG00000017420	PSPC1	100	96.947	ENSMLUG00000017663	PSPC1	100	96.947	Myotis_lucifugus
ENSAMEG00000017420	PSPC1	100	97.132	ENSNGAG00000011271	Pspc1	100	97.132	Nannospalax_galili
ENSAMEG00000017420	PSPC1	74	64.411	ENSNBRG00000014059	pspc1	92	62.000	Neolamprologus_brichardi
ENSAMEG00000017420	PSPC1	100	98.470	ENSNLEG00000001294	PSPC1	100	98.470	Nomascus_leucogenys
ENSAMEG00000017420	PSPC1	84	94.141	ENSMEUG00000000476	PSPC1	84	94.922	Notamacropus_eugenii
ENSAMEG00000017420	PSPC1	100	86.180	ENSODEG00000007817	-	100	81.214	Octodon_degus
ENSAMEG00000017420	PSPC1	100	85.249	ENSODEG00000019012	-	100	86.590	Octodon_degus
ENSAMEG00000017420	PSPC1	99	64.338	ENSONIG00000012010	pspc1	99	63.603	Oreochromis_niloticus
ENSAMEG00000017420	PSPC1	99	66.219	ENSOANG00000011381	-	99	64.299	Ornithorhynchus_anatinus
ENSAMEG00000017420	PSPC1	77	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSAMEG00000017420	PSPC1	100	97.706	ENSOCUG00000006153	PSPC1	100	97.706	Oryctolagus_cuniculus
ENSAMEG00000017420	PSPC1	88	70.213	ENSORLG00000004232	-	92	62.231	Oryzias_latipes
ENSAMEG00000017420	PSPC1	88	69.787	ENSORLG00020000578	PSPC1	92	63.168	Oryzias_latipes_hni
ENSAMEG00000017420	PSPC1	88	70.638	ENSORLG00015017480	pspc1	82	69.091	Oryzias_latipes_hsok
ENSAMEG00000017420	PSPC1	100	98.470	ENSOGAG00000012643	PSPC1	100	98.470	Otolemur_garnettii
ENSAMEG00000017420	PSPC1	100	91.587	ENSOARG00000014163	PSPC1	100	91.587	Ovis_aries
ENSAMEG00000017420	PSPC1	89	92.688	ENSPPAG00000009836	PSPC1	96	96.221	Pan_paniscus
ENSAMEG00000017420	PSPC1	100	99.424	ENSPPRG00000008833	PSPC1	100	99.424	Panthera_pardus
ENSAMEG00000017420	PSPC1	100	83.877	ENSPTIG00000016917	PSPC1	100	83.877	Panthera_tigris_altaica
ENSAMEG00000017420	PSPC1	98	97.082	ENSPTRG00000005677	PSPC1	99	98.560	Pan_troglodytes
ENSAMEG00000017420	PSPC1	100	98.662	ENSPANG00000001992	PSPC1	100	98.662	Papio_anubis
ENSAMEG00000017420	PSPC1	89	74.514	ENSPKIG00000003578	pspc1	86	73.932	Paramormyrops_kingsleyae
ENSAMEG00000017420	PSPC1	99	86.767	ENSPSIG00000005168	PSPC1	99	87.669	Pelodiscus_sinensis
ENSAMEG00000017420	PSPC1	59	70.476	ENSPMGG00000015135	pspc1	86	70.382	Periophthalmus_magnuspinnatus
ENSAMEG00000017420	PSPC1	100	97.323	ENSPEMG00000015214	Pspc1	100	97.323	Peromyscus_maniculatus_bairdii
ENSAMEG00000017420	PSPC1	99	96.743	ENSPCIG00000017680	PSPC1	100	96.743	Phascolarctos_cinereus
ENSAMEG00000017420	PSPC1	93	66.998	ENSPFOG00000003362	pspc1	94	65.936	Poecilia_formosa
ENSAMEG00000017420	PSPC1	69	64.658	ENSPLAG00000004407	-	53	60.212	Poecilia_latipinna
ENSAMEG00000017420	PSPC1	93	66.998	ENSPLAG00000011540	pspc1	93	65.936	Poecilia_latipinna
ENSAMEG00000017420	PSPC1	93	66.600	ENSPMEG00000008322	pspc1	93	65.538	Poecilia_mexicana
ENSAMEG00000017420	PSPC1	69	65.278	ENSPMEG00000001025	-	51	60.753	Poecilia_mexicana
ENSAMEG00000017420	PSPC1	93	66.600	ENSPREG00000007786	pspc1	93	65.538	Poecilia_reticulata
ENSAMEG00000017420	PSPC1	100	98.279	ENSPPYG00000005186	PSPC1	100	98.279	Pongo_abelii
ENSAMEG00000017420	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSAMEG00000017420	PSPC1	100	93.881	ENSPCOG00000014364	PSPC1	100	93.881	Propithecus_coquereli
ENSAMEG00000017420	PSPC1	100	95.010	ENSPVAG00000005036	PSPC1	100	95.202	Pteropus_vampyrus
ENSAMEG00000017420	PSPC1	99	57.649	ENSPNYG00000008893	pspc1	100	54.731	Pundamilia_nyererei
ENSAMEG00000017420	PSPC1	99	68.411	ENSPNAG00000016511	pspc1	100	68.224	Pygocentrus_nattereri
ENSAMEG00000017420	PSPC1	100	97.132	ENSRNOG00000020782	Pspc1	100	97.132	Rattus_norvegicus
ENSAMEG00000017420	PSPC1	93	99.179	ENSRBIG00000036057	PSPC1	100	99.179	Rhinopithecus_bieti
ENSAMEG00000017420	PSPC1	100	98.853	ENSRROG00000036334	PSPC1	100	98.853	Rhinopithecus_roxellana
ENSAMEG00000017420	PSPC1	79	88.620	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSAMEG00000017420	PSPC1	100	90.667	ENSSHAG00000004696	PSPC1	100	91.048	Sarcophilus_harrisii
ENSAMEG00000017420	PSPC1	82	79.021	ENSSFOG00015001395	pspc1	90	78.241	Scleropages_formosus
ENSAMEG00000017420	PSPC1	88	67.155	ENSSMAG00000001761	pspc1	86	75.072	Scophthalmus_maximus
ENSAMEG00000017420	PSPC1	88	68.966	ENSSDUG00000010651	pspc1	76	74.186	Seriola_dumerili
ENSAMEG00000017420	PSPC1	88	64.502	ENSSLDG00000004284	pspc1	90	58.910	Seriola_lalandi_dorsalis
ENSAMEG00000017420	PSPC1	100	90.211	ENSSARG00000000888	PSPC1	100	90.403	Sorex_araneus
ENSAMEG00000017420	PSPC1	89	53.814	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSAMEG00000017420	PSPC1	99	75.283	ENSSPUG00000008550	PSPC1	99	75.816	Sphenodon_punctatus
ENSAMEG00000017420	PSPC1	88	69.278	ENSSPAG00000001921	pspc1	82	70.678	Stegastes_partitus
ENSAMEG00000017420	PSPC1	100	97.126	ENSSSCG00000009569	PSPC1	100	97.126	Sus_scrofa
ENSAMEG00000017420	PSPC1	89	94.647	ENSTGUG00000011295	PSPC1	100	94.647	Taeniopygia_guttata
ENSAMEG00000017420	PSPC1	95	60.117	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSAMEG00000017420	PSPC1	88	65.236	ENSTNIG00000010358	pspc1	90	64.588	Tetraodon_nigroviridis
ENSAMEG00000017420	PSPC1	100	77.543	ENSTBEG00000002361	PSPC1	100	75.670	Tupaia_belangeri
ENSAMEG00000017420	PSPC1	100	97.505	ENSTTRG00000003343	PSPC1	100	97.505	Tursiops_truncatus
ENSAMEG00000017420	PSPC1	67	100.000	ENSUAMG00000012309	PSPC1	100	100.000	Ursus_americanus
ENSAMEG00000017420	PSPC1	93	99.795	ENSUMAG00000013993	PSPC1	100	99.795	Ursus_maritimus
ENSAMEG00000017420	PSPC1	77	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSAMEG00000017420	PSPC1	100	99.616	ENSVVUG00000006414	PSPC1	100	99.616	Vulpes_vulpes
ENSAMEG00000017420	PSPC1	66	73.521	ENSXCOG00000017438	pspc1	84	73.239	Xiphophorus_couchianus
ENSAMEG00000017420	PSPC1	66	73.803	ENSXMAG00000007929	pspc1	84	73.521	Xiphophorus_maculatus