EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMEG00000020114 (Gene tree)
Gene ID: 100482395
Gene Symbol: PABPC5
Alias: PABP5
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Ailuropoda_melanoleuca
Status: putative
Strand: Minus strand
Length: 1143 bases
Position: chrGL194060.1:80603-81745
Accession: 13629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMEP00000021168	RRM_5	PF13893.6	1.5e-11	1	2
ENSAMEP00000021168	RRM_5	PF13893.6	1.5e-11	2	2
ENSAMEP00000021168	RRM_1	PF00076.22	4.9e-78	1	4
ENSAMEP00000021168	RRM_1	PF00076.22	4.9e-78	2	4
ENSAMEP00000021168	RRM_1	PF00076.22	4.9e-78	3	4
ENSAMEP00000021168	RRM_1	PF00076.22	4.9e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMET00000021937	PABPC5-201	1143	-	ENSAMEP00000021168	381 (aa)	-	D2I1W6

Gene Model

Click here to download ENSAMEG00000020114's gene model file

Pathways

Pathway ID	Pathway Name	Source
aml03013	RNA transport	KEGG
aml03015	mRNA surveillance pathway	KEGG
aml03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMEG00000020114's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMEG00000020114	PABPC5	96	60.882	ENSAMEG00000004099	PABPC1L	59	60.955
ENSAMEG00000020114	PABPC5	96	67.218	ENSAMEG00000011535	-	56	67.416
ENSAMEG00000020114	PABPC5	93	60.204	ENSAMEG00000019441	-	98	59.896
ENSAMEG00000020114	PABPC5	96	30.508	ENSAMEG00000011367	TRNAU1AP	62	30.409
ENSAMEG00000020114	PABPC5	97	63.881	ENSAMEG00000000348	PABPC1	58	64.888
ENSAMEG00000020114	PABPC5	94	35.802	ENSAMEG00000007555	ELAVL2	83	35.802
ENSAMEG00000020114	PABPC5	95	40.608	ENSAMEG00000015083	-	58	40.390

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMEG00000020114	PABPC5	100	97.375	ENSG00000174740	PABPC5	99	97.375	Homo_sapiens
ENSAMEG00000020114	PABPC5	100	97.375	ENSANAG00000005063	PABPC5	99	97.375	Aotus_nancymaae
ENSAMEG00000020114	PABPC5	100	96.850	ENSBTAG00000019942	PABPC5	99	96.850	Bos_taurus
ENSAMEG00000020114	PABPC5	100	96.850	ENSCJAG00000003665	PABPC5	99	96.850	Callithrix_jacchus
ENSAMEG00000020114	PABPC5	100	98.950	ENSCAFG00000017452	PABPC5	99	98.950	Canis_familiaris
ENSAMEG00000020114	PABPC5	100	96.850	ENSCHIG00000019004	PABPC5	99	96.850	Capra_hircus
ENSAMEG00000020114	PABPC5	100	96.850	ENSTSYG00000036351	PABPC5	99	96.850	Carlito_syrichta
ENSAMEG00000020114	PABPC5	99	87.895	ENSCAPG00000010714	PABPC5	99	87.895	Cavia_aperea
ENSAMEG00000020114	PABPC5	100	93.963	ENSCPOG00000002555	PABPC5	99	93.963	Cavia_porcellus
ENSAMEG00000020114	PABPC5	100	97.375	ENSCCAG00000032154	PABPC5	99	97.375	Cebus_capucinus
ENSAMEG00000020114	PABPC5	100	97.375	ENSCATG00000043083	PABPC5	99	97.375	Cercocebus_atys
ENSAMEG00000020114	PABPC5	100	95.276	ENSCLAG00000000647	PABPC5	99	95.276	Chinchilla_lanigera
ENSAMEG00000020114	PABPC5	100	97.375	ENSCSAG00000000065	PABPC5	99	97.375	Chlorocebus_sabaeus
ENSAMEG00000020114	PABPC5	100	97.375	ENSCANG00000011473	PABPC5	99	97.375	Colobus_angolensis_palliatus
ENSAMEG00000020114	PABPC5	100	93.701	ENSCGRG00000018699	Pabpc5	99	93.701	Cricetulus_griseus_crigri
ENSAMEG00000020114	PABPC5	100	78.534	ENSETEG00000011832	PABPC5	99	78.534	Echinops_telfairi
ENSAMEG00000020114	PABPC5	100	98.163	ENSEASG00005014396	PABPC5	99	98.163	Equus_asinus_asinus
ENSAMEG00000020114	PABPC5	100	98.163	ENSECAG00000003452	PABPC5	99	98.163	Equus_caballus
ENSAMEG00000020114	PABPC5	100	99.213	ENSFCAG00000004998	PABPC5	99	99.213	Felis_catus
ENSAMEG00000020114	PABPC5	100	96.325	ENSFDAG00000000126	PABPC5	99	96.325	Fukomys_damarensis
ENSAMEG00000020114	PABPC5	100	97.375	ENSGGOG00000007622	PABPC5	99	97.375	Gorilla_gorilla
ENSAMEG00000020114	PABPC5	95	96.774	ENSJJAG00000011960	Pabpc5	99	96.774	Jaculus_jaculus
ENSAMEG00000020114	PABPC5	100	97.375	ENSMFAG00000024561	PABPC5	99	97.375	Macaca_fascicularis
ENSAMEG00000020114	PABPC5	100	97.375	ENSMMUG00000011562	PABPC5	99	97.375	Macaca_mulatta
ENSAMEG00000020114	PABPC5	100	97.375	ENSMNEG00000037604	PABPC5	99	97.375	Macaca_nemestrina
ENSAMEG00000020114	PABPC5	100	97.375	ENSMLEG00000028318	PABPC5	99	97.375	Mandrillus_leucophaeus
ENSAMEG00000020114	PABPC5	100	96.325	ENSMICG00000041706	PABPC5	99	96.325	Microcebus_murinus
ENSAMEG00000020114	PABPC5	100	95.538	ENSMOCG00000001554	Pabpc5	99	95.538	Microtus_ochrogaster
ENSAMEG00000020114	PABPC5	99	93.668	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.668	Mus_caroli
ENSAMEG00000020114	PABPC5	99	94.195	ENSMUSG00000034732	Pabpc5	99	94.195	Mus_musculus
ENSAMEG00000020114	PABPC5	100	94.488	MGP_PahariEiJ_G0031908	Pabpc5	99	94.488	Mus_pahari
ENSAMEG00000020114	PABPC5	99	94.195	MGP_SPRETEiJ_G0034533	Pabpc5	99	94.195	Mus_spretus
ENSAMEG00000020114	PABPC5	100	98.425	ENSMPUG00000018465	PABPC5	99	98.425	Mustela_putorius_furo
ENSAMEG00000020114	PABPC5	100	96.588	ENSMLUG00000008244	PABPC5	99	96.588	Myotis_lucifugus
ENSAMEG00000020114	PABPC5	95	95.853	ENSNGAG00000004371	Pabpc5	99	95.853	Nannospalax_galili
ENSAMEG00000020114	PABPC5	100	97.375	ENSNLEG00000035086	PABPC5	99	97.375	Nomascus_leucogenys
ENSAMEG00000020114	PABPC5	98	97.727	ENSOPRG00000000856	PABPC5	99	97.727	Ochotona_princeps
ENSAMEG00000020114	PABPC5	100	97.113	ENSOCUG00000010919	PABPC5	99	97.113	Oryctolagus_cuniculus
ENSAMEG00000020114	PABPC5	100	96.588	ENSOGAG00000006882	PABPC5	99	96.588	Otolemur_garnettii
ENSAMEG00000020114	PABPC5	100	97.113	ENSOARG00000010260	PABPC5	99	97.113	Ovis_aries
ENSAMEG00000020114	PABPC5	100	97.113	ENSPPAG00000007378	PABPC5	99	97.113	Pan_paniscus
ENSAMEG00000020114	PABPC5	100	99.213	ENSPPRG00000010742	PABPC5	99	99.213	Panthera_pardus
ENSAMEG00000020114	PABPC5	100	99.213	ENSPTIG00000001480	PABPC5	99	99.213	Panthera_tigris_altaica
ENSAMEG00000020114	PABPC5	100	97.375	ENSPTRG00000022078	PABPC5	99	97.375	Pan_troglodytes
ENSAMEG00000020114	PABPC5	100	97.375	ENSPANG00000018282	PABPC5	99	97.375	Papio_anubis
ENSAMEG00000020114	PABPC5	100	94.488	ENSPEMG00000000171	Pabpc5	99	94.488	Peromyscus_maniculatus_bairdii
ENSAMEG00000020114	PABPC5	100	97.375	ENSPPYG00000020526	PABPC5	99	97.375	Pongo_abelii
ENSAMEG00000020114	PABPC5	99	96.727	ENSPCAG00000015577	PABPC5	100	96.727	Procavia_capensis
ENSAMEG00000020114	PABPC5	100	97.113	ENSPCOG00000000676	PABPC5	99	97.113	Propithecus_coquereli
ENSAMEG00000020114	PABPC5	100	97.900	ENSPVAG00000006465	PABPC5	99	97.900	Pteropus_vampyrus
ENSAMEG00000020114	PABPC5	100	94.226	ENSRNOG00000003354	Pabpc5	99	94.226	Rattus_norvegicus
ENSAMEG00000020114	PABPC5	100	97.375	ENSRBIG00000011760	PABPC5	99	97.375	Rhinopithecus_bieti
ENSAMEG00000020114	PABPC5	100	97.375	ENSRROG00000036708	PABPC5	99	97.375	Rhinopithecus_roxellana
ENSAMEG00000020114	PABPC5	100	97.375	ENSSBOG00000008658	PABPC5	99	97.375	Saimiri_boliviensis_boliviensis
ENSAMEG00000020114	PABPC5	100	94.751	ENSSARG00000014012	PABPC5	99	94.751	Sorex_araneus
ENSAMEG00000020114	PABPC5	100	97.638	ENSSSCG00000040194	PABPC5	99	97.638	Sus_scrofa
ENSAMEG00000020114	PABPC5	100	97.900	ENSTBEG00000016482	PABPC5	99	97.900	Tupaia_belangeri
ENSAMEG00000020114	PABPC5	100	99.475	ENSUAMG00000013627	PABPC5	99	99.475	Ursus_americanus
ENSAMEG00000020114	PABPC5	100	99.213	ENSUMAG00000023934	PABPC5	99	99.213	Ursus_maritimus
ENSAMEG00000020114	PABPC5	100	97.638	ENSVPAG00000001063	PABPC5	99	97.638	Vicugna_pacos
ENSAMEG00000020114	PABPC5	100	99.213	ENSVVUG00000013172	PABPC5	99	99.213	Vulpes_vulpes