EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000000199 (Gene tree)
Gene ID: -
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 5045 bases
Position: chr24:45870930-45875974
Accession: 103045478
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000000205	Smg4_UPF3	PF03467.15	9.3e-42	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000000205	-	882	XM_007254428	ENSAMXP00000000205	293 (aa)	XP_007254490	W5JXZ5

Gene Model

Click here to download ENSAMXG00000000199's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000000199's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000000199	upf3b	88	58.719	ENSG00000125351	UPF3B	91	62.814	Homo_sapiens
ENSAMXG00000000199	upf3b	100	83.398	ENSAPOG00000012775	upf3b	69	83.398	Acanthochromis_polyacanthus
ENSAMXG00000000199	upf3b	88	61.210	ENSAMEG00000000163	UPF3B	57	61.210	Ailuropoda_melanoleuca
ENSAMXG00000000199	upf3b	56	67.066	ENSACIG00000020468	upf3a	79	70.085	Amphilophus_citrinellus
ENSAMXG00000000199	upf3b	100	82.558	ENSACIG00000013582	upf3b	66	82.558	Amphilophus_citrinellus
ENSAMXG00000000199	upf3b	100	83.268	ENSAOCG00000000706	upf3b	66	83.268	Amphiprion_ocellaris
ENSAMXG00000000199	upf3b	100	83.012	ENSAPEG00000005545	upf3b	66	83.012	Amphiprion_percula
ENSAMXG00000000199	upf3b	100	83.784	ENSATEG00000018742	upf3b	67	83.784	Anabas_testudineus
ENSAMXG00000000199	upf3b	95	66.000	ENSACAG00000003625	UPF3B	57	68.421	Anolis_carolinensis
ENSAMXG00000000199	upf3b	97	53.311	ENSANAG00000025598	-	95	53.311	Aotus_nancymaae
ENSAMXG00000000199	upf3b	97	59.740	ENSANAG00000021894	-	95	61.688	Aotus_nancymaae
ENSAMXG00000000199	upf3b	91	53.137	ENSANAG00000033169	-	100	55.351	Aotus_nancymaae
ENSAMXG00000000199	upf3b	98	82.239	ENSACLG00000001649	upf3b	67	82.239	Astatotilapia_calliptera
ENSAMXG00000000199	upf3b	97	59.740	ENSBTAG00000035615	UPF3B	99	61.688	Bos_taurus
ENSAMXG00000000199	upf3b	54	66.250	ENSBTAG00000047365	-	71	67.089	Bos_taurus
ENSAMXG00000000199	upf3b	97	59.547	ENSCJAG00000004975	UPF3B	95	61.364	Callithrix_jacchus
ENSAMXG00000000199	upf3b	88	60.854	ENSCAFG00000018426	UPF3B	59	60.854	Canis_familiaris
ENSAMXG00000000199	upf3b	88	61.733	ENSCAFG00020004074	UPF3B	57	61.733	Canis_lupus_dingo
ENSAMXG00000000199	upf3b	88	60.638	ENSCHIG00000000247	-	56	60.424	Capra_hircus
ENSAMXG00000000199	upf3b	97	59.740	ENSCHIG00000018011	-	99	61.688	Capra_hircus
ENSAMXG00000000199	upf3b	97	56.508	ENSTSYG00000014690	UPF3B	95	58.413	Carlito_syrichta
ENSAMXG00000000199	upf3b	62	51.832	ENSCCAG00000021964	-	67	61.780	Cebus_capucinus
ENSAMXG00000000199	upf3b	62	51.256	ENSCCAG00000029813	-	54	57.055	Cebus_capucinus
ENSAMXG00000000199	upf3b	97	59.871	ENSCATG00000017506	UPF3B	95	61.688	Cercocebus_atys
ENSAMXG00000000199	upf3b	88	59.431	ENSCLAG00000003260	UPF3B	57	61.566	Chinchilla_lanigera
ENSAMXG00000000199	upf3b	88	58.156	ENSCSAG00000018348	UPF3B	56	60.071	Chlorocebus_sabaeus
ENSAMXG00000000199	upf3b	86	66.795	ENSCPBG00000020685	UPF3B	55	70.656	Chrysemys_picta_bellii
ENSAMXG00000000199	upf3b	63	41.398	ENSCING00000008396	-	98	45.223	Ciona_intestinalis
ENSAMXG00000000199	upf3b	97	59.871	ENSCANG00000029220	UPF3B	95	61.688	Colobus_angolensis_palliatus
ENSAMXG00000000199	upf3b	88	57.447	ENSCGRG00001006858	-	57	59.786	Cricetulus_griseus_chok1gshd
ENSAMXG00000000199	upf3b	88	54.643	ENSCGRG00001013643	-	73	54.643	Cricetulus_griseus_chok1gshd
ENSAMXG00000000199	upf3b	75	64.474	ENSCGRG00000007627	Upf3b	52	67.105	Cricetulus_griseus_crigri
ENSAMXG00000000199	upf3b	86	79.537	ENSCSEG00000002046	upf3b	61	79.537	Cynoglossus_semilaevis
ENSAMXG00000000199	upf3b	84	82.353	ENSCVAG00000005030	upf3b	56	79.231	Cyprinodon_variegatus
ENSAMXG00000000199	upf3b	86	81.853	ENSDARG00000000489	upf3b	69	81.853	Danio_rerio
ENSAMXG00000000199	upf3b	88	58.865	ENSDNOG00000008665	UPF3B	56	60.777	Dasypus_novemcinctus
ENSAMXG00000000199	upf3b	88	60.854	ENSDORG00000006077	Upf3b	58	60.854	Dipodomys_ordii
ENSAMXG00000000199	upf3b	88	59.273	ENSEASG00005012919	UPF3B	56	62.182	Equus_asinus_asinus
ENSAMXG00000000199	upf3b	88	59.273	ENSECAG00000016947	UPF3B	56	62.182	Equus_caballus
ENSAMXG00000000199	upf3b	86	80.695	ENSELUG00000020389	upf3b	69	76.344	Esox_lucius
ENSAMXG00000000199	upf3b	88	60.854	ENSFCAG00000004388	UPF3B	57	60.854	Felis_catus
ENSAMXG00000000199	upf3b	99	65.157	ENSFALG00000001569	UPF3B	56	65.385	Ficedula_albicollis
ENSAMXG00000000199	upf3b	97	61.566	ENSFDAG00000018869	UPF3B	57	61.566	Fukomys_damarensis
ENSAMXG00000000199	upf3b	63	81.283	ENSFHEG00000017895	upf3b	56	78.462	Fundulus_heteroclitus
ENSAMXG00000000199	upf3b	86	72.201	ENSGMOG00000001621	upf3b	54	72.201	Gadus_morhua
ENSAMXG00000000199	upf3b	100	64.388	ENSGALG00000008618	UPF3B	58	66.906	Gallus_gallus
ENSAMXG00000000199	upf3b	52	66.883	ENSGALG00000016815	-	70	70.093	Gallus_gallus
ENSAMXG00000000199	upf3b	88	80.749	ENSGAFG00000000829	upf3b	57	78.846	Gambusia_affinis
ENSAMXG00000000199	upf3b	91	76.812	ENSGACG00000017435	upf3b	100	79.348	Gasterosteus_aculeatus
ENSAMXG00000000199	upf3b	86	68.679	ENSGAGG00000001219	UPF3B	56	70.566	Gopherus_agassizii
ENSAMXG00000000199	upf3b	97	59.871	ENSGGOG00000023995	UPF3B	95	61.688	Gorilla_gorilla
ENSAMXG00000000199	upf3b	98	82.239	ENSHBUG00000017393	upf3b	67	82.239	Haplochromis_burtoni
ENSAMXG00000000199	upf3b	88	57.818	ENSHGLG00000011189	-	64	57.818	Heterocephalus_glaber_female
ENSAMXG00000000199	upf3b	88	60.854	ENSHGLG00000019582	-	57	60.854	Heterocephalus_glaber_female
ENSAMXG00000000199	upf3b	88	58.719	ENSHGLG00100002042	-	59	60.854	Heterocephalus_glaber_male
ENSAMXG00000000199	upf3b	88	57.818	ENSHGLG00100001889	-	65	57.818	Heterocephalus_glaber_male
ENSAMXG00000000199	upf3b	92	78.378	ENSHCOG00000017004	upf3b	66	78.378	Hippocampus_comes
ENSAMXG00000000199	upf3b	61	64.674	ENSHCOG00000013985	upf3a	73	67.052	Hippocampus_comes
ENSAMXG00000000199	upf3b	100	83.784	ENSIPUG00000019249	upf3b	70	83.784	Ictalurus_punctatus
ENSAMXG00000000199	upf3b	52	63.226	ENSSTOG00000030282	-	67	61.875	Ictidomys_tridecemlineatus
ENSAMXG00000000199	upf3b	88	59.220	ENSSTOG00000001101	UPF3B	57	60.854	Ictidomys_tridecemlineatus
ENSAMXG00000000199	upf3b	52	63.871	ENSJJAG00000018099	-	83	57.627	Jaculus_jaculus
ENSAMXG00000000199	upf3b	88	58.511	ENSJJAG00000000053	Upf3b	57	60.498	Jaculus_jaculus
ENSAMXG00000000199	upf3b	100	81.467	ENSKMAG00000020300	upf3b	68	81.467	Kryptolebias_marmoratus
ENSAMXG00000000199	upf3b	86	79.537	ENSLBEG00000028689	upf3b	56	79.537	Labrus_bergylta
ENSAMXG00000000199	upf3b	97	78.261	ENSLACG00000008691	UPF3B	65	76.154	Latimeria_chalumnae
ENSAMXG00000000199	upf3b	100	75.290	ENSLOCG00000015238	upf3b	58	75.290	Lepisosteus_oculatus
ENSAMXG00000000199	upf3b	88	60.854	ENSLAFG00000001267	UPF3B	57	60.854	Loxodonta_africana
ENSAMXG00000000199	upf3b	67	52.113	ENSMFAG00000045275	-	88	53.886	Macaca_fascicularis
ENSAMXG00000000199	upf3b	97	59.871	ENSMFAG00000045414	UPF3B	95	61.688	Macaca_fascicularis
ENSAMXG00000000199	upf3b	55	53.631	ENSMMUG00000046682	-	77	55.975	Macaca_mulatta
ENSAMXG00000000199	upf3b	97	59.871	ENSMMUG00000020222	UPF3B	95	61.688	Macaca_mulatta
ENSAMXG00000000199	upf3b	67	51.643	ENSMNEG00000040898	-	88	53.368	Macaca_nemestrina
ENSAMXG00000000199	upf3b	97	59.871	ENSMNEG00000039794	UPF3B	95	61.688	Macaca_nemestrina
ENSAMXG00000000199	upf3b	97	59.871	ENSMLEG00000010999	UPF3B	95	61.688	Mandrillus_leucophaeus
ENSAMXG00000000199	upf3b	98	82.239	ENSMZEG00005007871	upf3b	67	82.239	Maylandia_zebra
ENSAMXG00000000199	upf3b	97	59.740	ENSMICG00000001743	UPF3B	95	61.688	Microcebus_murinus
ENSAMXG00000000199	upf3b	88	57.801	ENSMOCG00000017893	Upf3b	56	59.717	Microtus_ochrogaster
ENSAMXG00000000199	upf3b	100	79.615	ENSMMOG00000004183	upf3b	70	80.769	Mola_mola
ENSAMXG00000000199	upf3b	88	70.536	ENSMODG00000010232	UPF3B	67	70.536	Monodelphis_domestica
ENSAMXG00000000199	upf3b	77	83.152	ENSMALG00000008042	upf3b	55	77.992	Monopterus_albus
ENSAMXG00000000199	upf3b	88	59.786	MGP_CAROLIEiJ_G0032999	Upf3b	57	61.146	Mus_caroli
ENSAMXG00000000199	upf3b	88	57.651	ENSMUSG00000036572	Upf3b	57	61.146	Mus_musculus
ENSAMXG00000000199	upf3b	88	57.651	MGP_PahariEiJ_G0031543	Upf3b	57	61.783	Mus_pahari
ENSAMXG00000000199	upf3b	88	57.651	MGP_SPRETEiJ_G0034152	Upf3b	57	61.146	Mus_spretus
ENSAMXG00000000199	upf3b	88	61.210	ENSMPUG00000001531	UPF3B	59	61.210	Mustela_putorius_furo
ENSAMXG00000000199	upf3b	86	60.584	ENSMLUG00000010821	UPF3B	57	62.774	Myotis_lucifugus
ENSAMXG00000000199	upf3b	88	58.511	ENSNGAG00000008231	Upf3b	57	60.142	Nannospalax_galili
ENSAMXG00000000199	upf3b	63	84.211	ENSNBRG00000011560	upf3b	97	87.500	Neolamprologus_brichardi
ENSAMXG00000000199	upf3b	67	51.456	ENSNLEG00000027516	-	88	53.226	Nomascus_leucogenys
ENSAMXG00000000199	upf3b	79	63.598	ENSNLEG00000014897	UPF3B	65	72.131	Nomascus_leucogenys
ENSAMXG00000000199	upf3b	69	51.092	ENSODEG00000007164	-	86	53.886	Octodon_degus
ENSAMXG00000000199	upf3b	67	54.412	ENSODEG00000006064	-	89	55.676	Octodon_degus
ENSAMXG00000000199	upf3b	88	61.210	ENSODEG00000002186	-	63	61.210	Octodon_degus
ENSAMXG00000000199	upf3b	53	61.392	ENSODEG00000009176	-	63	61.392	Octodon_degus
ENSAMXG00000000199	upf3b	100	83.398	ENSONIG00000002536	upf3b	67	83.398	Oreochromis_niloticus
ENSAMXG00000000199	upf3b	88	57.801	ENSOCUG00000010213	UPF3B	56	59.717	Oryctolagus_cuniculus
ENSAMXG00000000199	upf3b	100	76.062	ENSORLG00000001026	upf3b	69	76.062	Oryzias_latipes
ENSAMXG00000000199	upf3b	100	71.141	ENSORLG00020003758	upf3b	100	71.141	Oryzias_latipes_hni
ENSAMXG00000000199	upf3b	100	76.062	ENSORLG00015012954	upf3b	69	76.062	Oryzias_latipes_hsok
ENSAMXG00000000199	upf3b	87	80.749	ENSOMEG00000014736	upf3b	71	78.764	Oryzias_melastigma
ENSAMXG00000000199	upf3b	65	56.039	ENSOGAG00000033003	-	59	58.719	Otolemur_garnettii
ENSAMXG00000000199	upf3b	88	59.075	ENSOGAG00000004643	-	57	61.210	Otolemur_garnettii
ENSAMXG00000000199	upf3b	88	59.649	ENSOARG00000016051	-	57	59.441	Ovis_aries
ENSAMXG00000000199	upf3b	97	59.871	ENSPPAG00000040390	UPF3B	95	61.688	Pan_paniscus
ENSAMXG00000000199	upf3b	88	60.854	ENSPPRG00000023536	UPF3B	57	60.854	Panthera_pardus
ENSAMXG00000000199	upf3b	97	59.416	ENSPTIG00000015264	UPF3B	95	61.364	Panthera_tigris_altaica
ENSAMXG00000000199	upf3b	97	59.871	ENSPTRG00000022228	UPF3B	95	61.688	Pan_troglodytes
ENSAMXG00000000199	upf3b	57	55.135	ENSPANG00000029350	-	86	56.180	Papio_anubis
ENSAMXG00000000199	upf3b	97	59.871	ENSPANG00000000900	UPF3B	95	61.688	Papio_anubis
ENSAMXG00000000199	upf3b	100	80.385	ENSPKIG00000019226	upf3b	99	82.692	Paramormyrops_kingsleyae
ENSAMXG00000000199	upf3b	59	70.166	ENSPSIG00000005833	UPF3B	63	72.928	Pelodiscus_sinensis
ENSAMXG00000000199	upf3b	86	81.538	ENSPMGG00000016067	upf3b	94	81.538	Periophthalmus_magnuspinnatus
ENSAMXG00000000199	upf3b	88	60.142	ENSPEMG00000012352	Upf3b	57	60.142	Peromyscus_maniculatus_bairdii
ENSAMXG00000000199	upf3b	85	50.847	ENSPCIG00000019590	-	69	68.553	Phascolarctos_cinereus
ENSAMXG00000000199	upf3b	91	81.818	ENSPLAG00000019922	upf3b	66	79.615	Poecilia_latipinna
ENSAMXG00000000199	upf3b	91	81.818	ENSPLAG00000005105	upf3b	68	77.985	Poecilia_latipinna
ENSAMXG00000000199	upf3b	55	67.284	ENSPLAG00000011960	upf3a	76	61.364	Poecilia_latipinna
ENSAMXG00000000199	upf3b	91	81.818	ENSPMEG00000023532	upf3b	66	79.615	Poecilia_mexicana
ENSAMXG00000000199	upf3b	50	84.354	ENSPREG00000012214	upf3b	95	86.014	Poecilia_reticulata
ENSAMXG00000000199	upf3b	97	57.453	ENSPPYG00000020675	-	95	59.561	Pongo_abelii
ENSAMXG00000000199	upf3b	88	58.156	ENSPCAG00000009464	UPF3B	56	60.071	Procavia_capensis
ENSAMXG00000000199	upf3b	97	59.416	ENSPCOG00000021960	UPF3B	95	61.364	Propithecus_coquereli
ENSAMXG00000000199	upf3b	98	82.239	ENSPNYG00000009846	upf3b	67	82.239	Pundamilia_nyererei
ENSAMXG00000000199	upf3b	100	87.259	ENSPNAG00000021528	upf3b	100	85.382	Pygocentrus_nattereri
ENSAMXG00000000199	upf3b	88	57.651	ENSRNOG00000039994	Upf3b	57	59.786	Rattus_norvegicus
ENSAMXG00000000199	upf3b	68	59.223	ENSRBIG00000037219	UPF3B	51	62.136	Rhinopithecus_bieti
ENSAMXG00000000199	upf3b	97	59.871	ENSRROG00000041031	UPF3B	95	61.688	Rhinopithecus_roxellana
ENSAMXG00000000199	upf3b	97	60.854	ENSSBOG00000019740	UPF3B	94	63.819	Saimiri_boliviensis_boliviensis
ENSAMXG00000000199	upf3b	100	80.695	ENSSFOG00015005614	upf3b	57	80.695	Scleropages_formosus
ENSAMXG00000000199	upf3b	55	65.644	ENSSMAG00000003858	upf3a	95	60.690	Scophthalmus_maximus
ENSAMXG00000000199	upf3b	98	76.080	ENSSMAG00000012913	upf3b	98	75.908	Scophthalmus_maximus
ENSAMXG00000000199	upf3b	98	83.398	ENSSDUG00000005682	upf3b	66	83.398	Seriola_dumerili
ENSAMXG00000000199	upf3b	61	63.187	ENSSDUG00000009680	upf3a	57	76.344	Seriola_dumerili
ENSAMXG00000000199	upf3b	98	83.784	ENSSLDG00000003130	upf3b	66	83.784	Seriola_lalandi_dorsalis
ENSAMXG00000000199	upf3b	61	67.005	ENSSPUG00000013082	UPF3B	57	66.182	Sphenodon_punctatus
ENSAMXG00000000199	upf3b	56	67.273	ENSSPAG00000007938	upf3a	70	67.532	Stegastes_partitus
ENSAMXG00000000199	upf3b	98	82.625	ENSSPAG00000009989	upf3b	69	82.625	Stegastes_partitus
ENSAMXG00000000199	upf3b	88	60.854	ENSSSCG00000012617	UPF3B	57	60.854	Sus_scrofa
ENSAMXG00000000199	upf3b	88	71.111	ENSTGUG00000003413	UPF3B	52	73.333	Taeniopygia_guttata
ENSAMXG00000000199	upf3b	95	77.992	ENSTRUG00000010645	upf3b	67	77.992	Takifugu_rubripes
ENSAMXG00000000199	upf3b	88	62.816	ENSUAMG00000024565	UPF3B	57	62.816	Ursus_americanus
ENSAMXG00000000199	upf3b	88	61.733	ENSVVUG00000011594	UPF3B	92	63.000	Vulpes_vulpes
ENSAMXG00000000199	upf3b	62	71.739	ENSXETG00000007440	upf3b	79	74.595	Xenopus_tropicalis
ENSAMXG00000000199	upf3b	92	81.622	ENSXCOG00000016586	upf3b	95	84.615	Xiphophorus_couchianus
ENSAMXG00000000199	upf3b	88	81.283	ENSXMAG00000013680	upf3b	57	79.615	Xiphophorus_maculatus