EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000000342 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 3108 bases
Position: chr15:11991439-11994546
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000000353	RIO1	PF01163.22	8.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000000353	-	804	-	ENSAMXP00000000353	267 (aa)	-	W5JYE3

Gene Model

Click here to download ENSAMXG00000000342's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000000342's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000000342	-	93	47.809	ENSAMXG00000030509	-	73	47.809
ENSAMXG00000000342	-	92	33.977	ENSAMXG00000003794	chek2	50	33.977
ENSAMXG00000000342	-	88	31.276	ENSAMXG00000031117	camk1ga	55	31.276
ENSAMXG00000000342	-	94	34.328	ENSAMXG00000015364	stk33	54	34.328
ENSAMXG00000000342	-	93	31.102	ENSAMXG00000009127	rps6ka4	65	32.283

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000000342	-	93	44.488	ENSACAG00000006724	-	94	44.488	Anolis_carolinensis
ENSAMXG00000000342	-	93	46.400	ENSDARG00000017994	tssk6	93	46.400	Danio_rerio
ENSAMXG00000000342	-	93	49.004	ENSELUG00000019867	tssk6	94	49.004	Esox_lucius
ENSAMXG00000000342	-	93	47.809	ENSLACG00000008538	TSSK6	93	47.809	Latimeria_chalumnae
ENSAMXG00000000342	-	93	50.000	ENSPNAG00000020053	tssk6	91	50.000	Pygocentrus_nattereri