EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAMXG00000000452 (Gene tree)
Gene ID
103033460
Gene Symbol
pabpn1
Alias
fb19c03|wu:fb17e03|wu:fb18c06|wu:fb19c03|zgc:85979|zgc:92452
Full Name
poly(A) binding protein nuclear 1
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Plus strand
Length
15081 bases
Position
chr3:29152408-29167488
Accession
103033460
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000033286RRM_1PF00076.221.2e-1711
ENSAMXP00000000455RRM_1PF00076.222e-1711
ENSAMXP00000035506RRM_1PF00076.222.6e-1711
ENSAMXP00000045112RRM_1PF00076.223.3e-1411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000046334-534-ENSAMXP00000033286177 (aa)--
ENSAMXT00000033700-848XM_022683906ENSAMXP00000045112282 (aa)XP_022539627-
ENSAMXT00000000455-702-ENSAMXP00000000455233 (aa)-W5JYP5
ENSAMXT00000055953-789-ENSAMXP00000035506262 (aa)--
Gene Model
Click here to download ENSAMXG00000000452's gene model file
Pathways
Pathway IDPathway NameSource
amex03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000000452's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAMXG00000000452pabpn17733.333ENSAMXG00000019066dazap15333.333
ENSAMXG00000000452pabpn17170.866ENSAMXG00000010873PABPN1L7753.738
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000000452pabpn19483.929ENSG00000100836PABPN19483.929Homo_sapiens
ENSAMXG00000000452pabpn19483.929ENSG00000258643BCL2L2-PABPN17073.820Homo_sapiens
ENSAMXG00000000452pabpn110096.996ENSAPOG00000016425pabpn110096.996Acanthochromis_polyacanthus
ENSAMXG00000000452pabpn19483.929ENSAMEG00000007048BCL2L2-PABPN110085.789Ailuropoda_melanoleuca
ENSAMXG00000000452pabpn110097.175ENSACIG00000021744pabpn110097.175Amphilophus_citrinellus
ENSAMXG00000000452pabpn110096.996ENSAOCG00000015805pabpn110096.996Amphiprion_ocellaris
ENSAMXG00000000452pabpn110096.996ENSAPEG00000009623pabpn110096.996Amphiprion_percula
ENSAMXG00000000452pabpn110097.425ENSATEG00000020531pabpn110097.425Anabas_testudineus
ENSAMXG00000000452pabpn19483.929ENSACAG00000006185-8172.917Anolis_carolinensis
ENSAMXG00000000452pabpn19483.929ENSANAG00000024513-8476.860Aotus_nancymaae
ENSAMXG00000000452pabpn19495.964ENSACLG00000016374pabpn110085.417Astatotilapia_calliptera
ENSAMXG00000000452pabpn19483.929ENSBTAG00000006884PABPN18670.455Bos_taurus
ENSAMXG00000000452pabpn18184.828ENSBTAG00000050594-7484.409Bos_taurus
ENSAMXG00000000452pabpn19482.143ENSBTAG00000053753-7184.375Bos_taurus
ENSAMXG00000000452pabpn17362.121WBGene00003904pabp-28655.556Caenorhabditis_elegans
ENSAMXG00000000452pabpn19483.929ENSCJAG00000007960-8477.682Callithrix_jacchus
ENSAMXG00000000452pabpn19482.143ENSCJAG00000004407-8482.143Callithrix_jacchus
ENSAMXG00000000452pabpn19483.929ENSCAFG00000011482PABPN18671.970Canis_familiaris
ENSAMXG00000000452pabpn19483.929ENSCAFG00020007298-8671.591Canis_lupus_dingo
ENSAMXG00000000452pabpn19483.929ENSCAFG00020006651-8671.591Canis_lupus_dingo
ENSAMXG00000000452pabpn19483.929ENSCHIG00000012184PABPN18671.591Capra_hircus
ENSAMXG00000000452pabpn19483.929ENSTSYG00000033996BCL2L2-PABPN19483.929Carlito_syrichta
ENSAMXG00000000452pabpn17983.453ENSCAPG00000009461-9983.453Cavia_aperea
ENSAMXG00000000452pabpn19483.333ENSCPOG00000025574PABPN16883.254Cavia_porcellus
ENSAMXG00000000452pabpn19483.929ENSCCAG00000033954BCL2L2-PABPN18477.682Cebus_capucinus
ENSAMXG00000000452pabpn19483.929ENSCATG00000038536BCL2L2-PABPN18477.682Cercocebus_atys
ENSAMXG00000000452pabpn18583.444ENSCLAG00000012423PABPN15683.444Chinchilla_lanigera
ENSAMXG00000000452pabpn19482.738ENSCSAG00000016036PABPN18670.455Chlorocebus_sabaeus
ENSAMXG00000000452pabpn19476.190ENSCHOG00000004798BCL2L2-PABPN19272.273Choloepus_hoffmanni
ENSAMXG00000000452pabpn19484.524ENSCPBG00000026060-9484.524Chrysemys_picta_bellii
ENSAMXG00000000452pabpn110061.798ENSCING00000012468-8960.849Ciona_intestinalis
ENSAMXG00000000452pabpn110064.804ENSCSAVG00000002001-9360.714Ciona_savignyi
ENSAMXG00000000452pabpn19483.929ENSCANG00000009750BCL2L2-PABPN19483.929Colobus_angolensis_palliatus
ENSAMXG00000000452pabpn19471.084ENSCANG00000030980-8764.706Colobus_angolensis_palliatus
ENSAMXG00000000452pabpn19483.333ENSCGRG00001019696Pabpn19483.333Cricetulus_griseus_chok1gshd
ENSAMXG00000000452pabpn19483.333ENSCGRG00000011102Pabpn19192.517Cricetulus_griseus_crigri
ENSAMXG00000000452pabpn110096.610ENSCSEG00000008774pabpn110096.567Cynoglossus_semilaevis
ENSAMXG00000000452pabpn110091.453ENSCVAG00000003152pabpn110094.444Cyprinodon_variegatus
ENSAMXG00000000452pabpn19555.952ENSDARG00000087996pabpn1l9657.862Danio_rerio
ENSAMXG00000000452pabpn110098.305ENSDARG00000045373pabpn110097.738Danio_rerio
ENSAMXG00000000452pabpn19483.929ENSDNOG00000023682PABPN18671.591Dasypus_novemcinctus
ENSAMXG00000000452pabpn17484.211ENSDORG00000023928-8583.607Dipodomys_ordii
ENSAMXG00000000452pabpn19482.738ENSDORG00000028966-8670.833Dipodomys_ordii
ENSAMXG00000000452pabpn110062.360FBgn0005648Pabp29857.778Drosophila_melanogaster
ENSAMXG00000000452pabpn110081.356ENSEBUG00000002322pabpn19973.276Eptatretus_burgeri
ENSAMXG00000000452pabpn19483.929ENSEASG00005011716PABPN18671.591Equus_asinus_asinus
ENSAMXG00000000452pabpn19383.133ENSECAG00000011652PABPN18571.146Equus_caballus
ENSAMXG00000000452pabpn19480.952ENSEEUG00000012973-6979.803Erinaceus_europaeus
ENSAMXG00000000452pabpn110097.175ENSELUG00000022654pabpn110095.359Esox_lucius
ENSAMXG00000000452pabpn19483.929ENSFCAG00000031922PABPN18671.591Felis_catus
ENSAMXG00000000452pabpn19483.333ENSFDAG00000018381BCL2L2-PABPN19483.333Fukomys_damarensis
ENSAMXG00000000452pabpn110094.850ENSFHEG00000007215pabpn110094.850Fundulus_heteroclitus
ENSAMXG00000000452pabpn19399.394ENSGMOG00000003922pabpn110085.614Gadus_morhua
ENSAMXG00000000452pabpn19481.765ENSGALG00000052930-6182.938Gallus_gallus
ENSAMXG00000000452pabpn110097.021ENSGAFG00000017099pabpn110097.021Gambusia_affinis
ENSAMXG00000000452pabpn110090.688ENSGACG00000002167pabpn110090.688Gasterosteus_aculeatus
ENSAMXG00000000452pabpn19468.072ENSGGOG00000039675-9166.667Gorilla_gorilla
ENSAMXG00000000452pabpn19483.929ENSGGOG00000022683-8477.682Gorilla_gorilla
ENSAMXG00000000452pabpn19472.024ENSGGOG00000025919-9871.141Gorilla_gorilla
ENSAMXG00000000452pabpn110097.425ENSHBUG00000019523pabpn110097.425Haplochromis_burtoni
ENSAMXG00000000452pabpn19464.286ENSHGLG00000009842-9364.286Heterocephalus_glaber_female
ENSAMXG00000000452pabpn19483.333ENSHGLG00000002927-9292.517Heterocephalus_glaber_female
ENSAMXG00000000452pabpn19370.060ENSHGLG00000018588-7075.132Heterocephalus_glaber_female
ENSAMXG00000000452pabpn19370.060ENSHGLG00100015565-8766.087Heterocephalus_glaber_male
ENSAMXG00000000452pabpn19475.000ENSHGLG00100018935-9475.000Heterocephalus_glaber_male
ENSAMXG00000000452pabpn19483.333ENSHGLG00100006673-9292.517Heterocephalus_glaber_male
ENSAMXG00000000452pabpn110096.567ENSHCOG00000004655pabpn110096.567Hippocampus_comes
ENSAMXG00000000452pabpn110090.558ENSIPUG00000000180-9990.558Ictalurus_punctatus
ENSAMXG00000000452pabpn110098.305ENSIPUG00000008085PABPN110097.854Ictalurus_punctatus
ENSAMXG00000000452pabpn19483.929ENSSTOG00000029847BCL2L2-PABPN19483.929Ictidomys_tridecemlineatus
ENSAMXG00000000452pabpn19483.929ENSJJAG00000023507Gm205219483.929Jaculus_jaculus
ENSAMXG00000000452pabpn110096.581ENSKMAG00000018748pabpn110096.581Kryptolebias_marmoratus
ENSAMXG00000000452pabpn110097.425ENSLBEG00000027266pabpn110097.425Labrus_bergylta
ENSAMXG00000000452pabpn18786.624ENSLACG00000000646pabpn19477.376Latimeria_chalumnae
ENSAMXG00000000452pabpn110066.292ENSLOCG00000004694pabpn1l9966.512Lepisosteus_oculatus
ENSAMXG00000000452pabpn19398.182ENSLOCG00000000796pabpn110086.909Lepisosteus_oculatus
ENSAMXG00000000452pabpn18684.211ENSLAFG00000031227-10084.211Loxodonta_africana
ENSAMXG00000000452pabpn18076.056ENSMFAG00000031355-9976.056Macaca_fascicularis
ENSAMXG00000000452pabpn19483.929ENSMFAG00000032183BCL2L2-PABPN19483.929Macaca_fascicularis
ENSAMXG00000000452pabpn19483.929ENSMMUG00000014747BCL2L2-PABPN110083.673Macaca_mulatta
ENSAMXG00000000452pabpn18574.667ENSMMUG00000048382-6968.900Macaca_mulatta
ENSAMXG00000000452pabpn19469.822ENSMNEG00000035750-9976.056Macaca_nemestrina
ENSAMXG00000000452pabpn19483.929ENSMNEG00000045065BCL2L2-PABPN18477.682Macaca_nemestrina
ENSAMXG00000000452pabpn19483.929ENSMLEG00000043862BCL2L2-PABPN19483.929Mandrillus_leucophaeus
ENSAMXG00000000452pabpn19467.066ENSMLEG00000034623-9973.944Mandrillus_leucophaeus
ENSAMXG00000000452pabpn19996.087ENSMAMG00000007979pabpn110087.279Mastacembelus_armatus
ENSAMXG00000000452pabpn19597.738ENSMZEG00005011904pabpn110087.368Maylandia_zebra
ENSAMXG00000000452pabpn19483.333ENSMAUG00000007383Gm205218771.756Mesocricetus_auratus
ENSAMXG00000000452pabpn19483.929ENSMICG00000010002BCL2L2-PABPN18478.390Microcebus_murinus
ENSAMXG00000000452pabpn19482.738ENSMOCG00000018557Gm205219092.517Microtus_ochrogaster
ENSAMXG00000000452pabpn110097.854ENSMMOG00000005405pabpn110097.854Mola_mola
ENSAMXG00000000452pabpn19283.030ENSMODG00000004535-8568.199Monodelphis_domestica
ENSAMXG00000000452pabpn19997.391ENSMALG00000019612pabpn110085.965Monopterus_albus
ENSAMXG00000000452pabpn19482.143MGP_CAROLIEiJ_G0019276Gm205217072.961Mus_caroli
ENSAMXG00000000452pabpn19482.143MGP_CAROLIEiJ_G0019277Pabpn19091.837Mus_caroli
ENSAMXG00000000452pabpn19482.738ENSMUSG00000092232Gm205217073.391Mus_musculus
ENSAMXG00000000452pabpn19482.738ENSMUSG00000022194Pabpn19091.837Mus_musculus
ENSAMXG00000000452pabpn19482.738MGP_PahariEiJ_G0030295Pabpn110095.238Mus_pahari
ENSAMXG00000000452pabpn19482.738MGP_PahariEiJ_G0030294Gm205217073.391Mus_pahari
ENSAMXG00000000452pabpn19482.738MGP_SPRETEiJ_G0020166Pabpn19091.837Mus_spretus
ENSAMXG00000000452pabpn19482.738MGP_SPRETEiJ_G0020165Gm205217073.391Mus_spretus
ENSAMXG00000000452pabpn18783.974ENSMPUG00000006775-9283.974Mustela_putorius_furo
ENSAMXG00000000452pabpn110084.916ENSMLUG00000003800-10084.737Myotis_lucifugus
ENSAMXG00000000452pabpn19482.143ENSMLUG00000028677-8574.576Myotis_lucifugus
ENSAMXG00000000452pabpn19482.249ENSMLUG00000012452-6980.952Myotis_lucifugus
ENSAMXG00000000452pabpn19483.929ENSNGAG00000019529Gm205217074.249Nannospalax_galili
ENSAMXG00000000452pabpn110097.175ENSNBRG00000023955pabpn110097.175Neolamprologus_brichardi
ENSAMXG00000000452pabpn18462.416ENSNLEG00000035292-9962.416Nomascus_leucogenys
ENSAMXG00000000452pabpn19483.929ENSNLEG00000015007-7483.732Nomascus_leucogenys
ENSAMXG00000000452pabpn19267.073ENSNLEG00000030598-7768.421Nomascus_leucogenys
ENSAMXG00000000452pabpn110073.743ENSODEG00000011555-8972.619Octodon_degus
ENSAMXG00000000452pabpn19472.289ENSODEG00000003739-8863.424Octodon_degus
ENSAMXG00000000452pabpn19483.333ENSODEG00000002083BCL2L2-PABPN16883.254Octodon_degus
ENSAMXG00000000452pabpn19597.738ENSONIG00000008112pabpn110087.018Oreochromis_niloticus
ENSAMXG00000000452pabpn18386.395ENSOANG00000009218-10086.395Ornithorhynchus_anatinus
ENSAMXG00000000452pabpn19483.333ENSOCUG00000016174PABPN19571.756Oryctolagus_cuniculus
ENSAMXG00000000452pabpn19997.391ENSORLG00000027900pabpn19895.238Oryzias_latipes
ENSAMXG00000000452pabpn19997.391ENSORLG00020004681pabpn110084.642Oryzias_latipes_hni
ENSAMXG00000000452pabpn110097.854ENSORLG00015000018pabpn110097.854Oryzias_latipes_hsok
ENSAMXG00000000452pabpn19597.738ENSOMEG00000016618pabpn110086.667Oryzias_melastigma
ENSAMXG00000000452pabpn19483.929ENSOGAG00000008710PABPN18671.591Otolemur_garnettii
ENSAMXG00000000452pabpn19483.929ENSOARG00000019336BCL2L2-PABPN16473.820Ovis_aries
ENSAMXG00000000452pabpn19468.675ENSPPAG00000039421-9368.675Pan_paniscus
ENSAMXG00000000452pabpn19483.929ENSPPAG00000028984BCL2L2-PABPN19283.974Pan_paniscus
ENSAMXG00000000452pabpn19483.929ENSPPRG00000010567PABPN18671.591Panthera_pardus
ENSAMXG00000000452pabpn19483.929ENSPTIG00000001063BCL2L2-PABPN19483.929Panthera_tigris_altaica
ENSAMXG00000000452pabpn110064.103ENSPTRG00000047273-9361.508Pan_troglodytes
ENSAMXG00000000452pabpn19483.929ENSPTRG00000006167BCL2L28477.682Pan_troglodytes
ENSAMXG00000000452pabpn19471.257ENSPANG00000023326-9976.761Papio_anubis
ENSAMXG00000000452pabpn19483.929ENSPANG00000021100BCL2L2-PABPN18477.682Papio_anubis
ENSAMXG00000000452pabpn18370.068ENSPKIG00000008340pabpn1l8667.222Paramormyrops_kingsleyae
ENSAMXG00000000452pabpn110098.305ENSPKIG00000008144-10085.614Paramormyrops_kingsleyae
ENSAMXG00000000452pabpn110095.708ENSPKIG00000018052pabpn110095.708Paramormyrops_kingsleyae
ENSAMXG00000000452pabpn16584.348ENSPSIG00000011959-8484.348Pelodiscus_sinensis
ENSAMXG00000000452pabpn19597.285ENSPMGG00000022027pabpn110085.409Periophthalmus_magnuspinnatus
ENSAMXG00000000452pabpn19483.333ENSPEMG00000008332Gm205218992.517Peromyscus_maniculatus_bairdii
ENSAMXG00000000452pabpn17289.062ENSPMAG00000006212pabpn19965.587Petromyzon_marinus
ENSAMXG00000000452pabpn19483.929ENSPCIG00000027751-8671.591Phascolarctos_cinereus
ENSAMXG00000000452pabpn110096.154ENSPFOG00000010351pabpn19996.154Poecilia_formosa
ENSAMXG00000000452pabpn19996.121ENSPLAG00000022696pabpn110086.760Poecilia_latipinna
ENSAMXG00000000452pabpn110096.154ENSPMEG00000020856pabpn110096.154Poecilia_mexicana
ENSAMXG00000000452pabpn110096.581ENSPREG00000011278pabpn110096.581Poecilia_reticulata
ENSAMXG00000000452pabpn18783.974ENSPPYG00000005663PABPN18971.032Pongo_abelii
ENSAMXG00000000452pabpn18466.883ENSPCAG00000005902PABPN18460.400Procavia_capensis
ENSAMXG00000000452pabpn19483.929ENSPCOG00000028047BCL2L2-PABPN18478.390Propithecus_coquereli
ENSAMXG00000000452pabpn19483.333ENSPVAG00000005270PABPN18670.342Pteropus_vampyrus
ENSAMXG00000000452pabpn110097.425ENSPNYG00000013182pabpn110097.425Pundamilia_nyererei
ENSAMXG00000000452pabpn110064.246ENSPNAG00000021666pabpn1l9565.979Pygocentrus_nattereri
ENSAMXG00000000452pabpn110099.435ENSPNAG00000023526pabpn110099.142Pygocentrus_nattereri
ENSAMXG00000000452pabpn19483.333ENSRNOG00000042195Pabpn18571.756Rattus_norvegicus
ENSAMXG00000000452pabpn19471.429ENSRBIG00000042811-9568.722Rhinopithecus_bieti
ENSAMXG00000000452pabpn18783.974ENSRBIG00000040762BCL2L2-PABPN16873.303Rhinopithecus_bieti
ENSAMXG00000000452pabpn19472.289ENSRBIG00000039547-8266.964Rhinopithecus_bieti
ENSAMXG00000000452pabpn19467.059ENSRROG00000036409-7065.939Rhinopithecus_roxellana
ENSAMXG00000000452pabpn19483.929ENSRROG00000045535BCL2L2-PABPN19483.929Rhinopithecus_roxellana
ENSAMXG00000000452pabpn19472.892ENSRROG00000040409-8267.411Rhinopithecus_roxellana
ENSAMXG00000000452pabpn19477.901ENSSBOG00000026930BCL2L2-PABPN19283.974Saimiri_boliviensis_boliviensis
ENSAMXG00000000452pabpn110068.156ENSSHAG00000007707-9963.025Sarcophilus_harrisii
ENSAMXG00000000452pabpn19483.929ENSSHAG00000014841-8785.789Sarcophilus_harrisii
ENSAMXG00000000452pabpn110097.175ENSSFOG00015014718pabpn110096.996Scleropages_formosus
ENSAMXG00000000452pabpn110097.175ENSSFOG00015012565pabpn110090.598Scleropages_formosus
ENSAMXG00000000452pabpn17272.656ENSSFOG00015015833pabpn1l8466.848Scleropages_formosus
ENSAMXG00000000452pabpn110097.175ENSSMAG00000020157pabpn110096.996Scophthalmus_maximus
ENSAMXG00000000452pabpn19996.957ENSSDUG00000020582pabpn110087.018Seriola_dumerili
ENSAMXG00000000452pabpn110097.425ENSSLDG00000007118pabpn110097.425Seriola_lalandi_dorsalis
ENSAMXG00000000452pabpn19485.119ENSSPUG00000018308-9485.119Sphenodon_punctatus
ENSAMXG00000000452pabpn110096.567ENSSPAG00000021658pabpn110096.567Stegastes_partitus
ENSAMXG00000000452pabpn15767.961ENSSSCG00000038472-6668.085Sus_scrofa
ENSAMXG00000000452pabpn19483.929ENSSSCG00000002023PABPN18671.591Sus_scrofa
ENSAMXG00000000452pabpn19965.730ENSSSCG00000034805-7959.716Sus_scrofa
ENSAMXG00000000452pabpn110095.708ENSTRUG00000023664pabpn110095.708Takifugu_rubripes
ENSAMXG00000000452pabpn19489.820ENSTNIG00000005369pabpn19396.040Tetraodon_nigroviridis
ENSAMXG00000000452pabpn19483.929ENSUAMG00000024460PABPN16883.732Ursus_americanus
ENSAMXG00000000452pabpn19483.929ENSUMAG00000014288BCL2L2-PABPN17073.820Ursus_maritimus
ENSAMXG00000000452pabpn19483.929ENSVVUG00000019912BCL2L2-PABPN17684.536Vulpes_vulpes
ENSAMXG00000000452pabpn19484.524ENSXETG00000014597pabpn17382.028Xenopus_tropicalis
ENSAMXG00000000452pabpn19786.628ENSXCOG00000005158pabpn19886.628Xiphophorus_couchianus
ENSAMXG00000000452pabpn110097.009ENSXMAG00000006196pabpn110097.009Xiphophorus_maculatus

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