EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000001589 (Gene tree)
Gene ID: 103034275
Gene Symbol: edc3
Alias: im:7151288|lsm16|wu:fb82d07|yjdc|zgc:112006
Full Name: enhancer of mRNA decapping 3
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 5167 bases
Position: chr24:40954550-40959716
Accession: 103034275
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000053065	FDF	PF09532.10	1.4e-10	1	1
ENSAMXP00000054847	FDF	PF09532.10	1.4e-10	1	1
ENSAMXP00000001627	FDF	PF09532.10	1.4e-10	1	1
ENSAMXP00000053065	LSM14	PF12701.7	6.8e-11	1	1
ENSAMXP00000054847	LSM14	PF12701.7	6.8e-11	1	1
ENSAMXP00000001627	LSM14	PF12701.7	6.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000001627	-	1998	-	ENSAMXP00000001627	505 (aa)	-	W5K217
ENSAMXT00000048441	-	2162	XM_007252861	ENSAMXP00000053065	504 (aa)	XP_007252923	UPI0003CD4859
ENSAMXT00000056301	-	2023	XM_022684147	ENSAMXP00000054847	504 (aa)	XP_022539868	UPI0003CD4859

Gene Model

Click here to download ENSAMXG00000001589's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000001589's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000001589	edc3	100	70.428	ENSG00000179151	EDC3	100	81.481	Homo_sapiens
ENSAMXG00000001589	edc3	100	60.665	ENSAPOG00000008655	EDC3	100	60.665	Acanthochromis_polyacanthus
ENSAMXG00000001589	edc3	100	82.341	ENSAPOG00000010791	edc3	100	82.341	Acanthochromis_polyacanthus
ENSAMXG00000001589	edc3	100	71.094	ENSAMEG00000008963	EDC3	100	71.094	Ailuropoda_melanoleuca
ENSAMXG00000001589	edc3	100	65.107	ENSACIG00000005330	EDC3	100	65.107	Amphilophus_citrinellus
ENSAMXG00000001589	edc3	100	79.563	ENSACIG00000017751	edc3	100	79.563	Amphilophus_citrinellus
ENSAMXG00000001589	edc3	100	63.796	ENSAOCG00000009103	-	100	63.796	Amphiprion_ocellaris
ENSAMXG00000001589	edc3	100	82.738	ENSAOCG00000005431	edc3	100	82.738	Amphiprion_ocellaris
ENSAMXG00000001589	edc3	100	63.992	ENSAPEG00000007841	EDC3	100	63.992	Amphiprion_percula
ENSAMXG00000001589	edc3	100	82.738	ENSAPEG00000000968	edc3	100	82.738	Amphiprion_percula
ENSAMXG00000001589	edc3	100	64.133	ENSATEG00000004205	-	100	64.133	Anabas_testudineus
ENSAMXG00000001589	edc3	100	82.341	ENSATEG00000015505	edc3	100	82.341	Anabas_testudineus
ENSAMXG00000001589	edc3	89	69.869	ENSAPLG00000008957	EDC3	100	69.869	Anas_platyrhynchos
ENSAMXG00000001589	edc3	78	69.424	ENSACAG00000000460	-	100	69.424	Anolis_carolinensis
ENSAMXG00000001589	edc3	100	70.392	ENSANAG00000024078	EDC3	100	70.392	Aotus_nancymaae
ENSAMXG00000001589	edc3	100	63.458	ENSACLG00000018776	-	100	63.458	Astatotilapia_calliptera
ENSAMXG00000001589	edc3	100	79.762	ENSACLG00000007232	edc3	100	79.762	Astatotilapia_calliptera
ENSAMXG00000001589	edc3	100	69.981	ENSBTAG00000007308	EDC3	100	69.981	Bos_taurus
ENSAMXG00000001589	edc3	100	70.600	ENSCJAG00000017681	EDC3	100	70.428	Callithrix_jacchus
ENSAMXG00000001589	edc3	100	70.898	ENSCAFG00000017935	EDC3	100	70.898	Canis_familiaris
ENSAMXG00000001589	edc3	100	70.898	ENSCAFG00020003909	EDC3	100	70.898	Canis_lupus_dingo
ENSAMXG00000001589	edc3	100	70.175	ENSCHIG00000023658	EDC3	100	70.175	Capra_hircus
ENSAMXG00000001589	edc3	100	70.980	ENSTSYG00000004822	EDC3	100	70.980	Carlito_syrichta
ENSAMXG00000001589	edc3	100	70.565	ENSCPOG00000015595	EDC3	100	70.565	Cavia_porcellus
ENSAMXG00000001589	edc3	100	70.428	ENSCCAG00000021663	EDC3	100	70.428	Cebus_capucinus
ENSAMXG00000001589	edc3	100	70.623	ENSCATG00000037511	EDC3	100	70.623	Cercocebus_atys
ENSAMXG00000001589	edc3	100	70.565	ENSCLAG00000005700	EDC3	100	70.565	Chinchilla_lanigera
ENSAMXG00000001589	edc3	100	70.623	ENSCSAG00000014239	EDC3	100	70.623	Chlorocebus_sabaeus
ENSAMXG00000001589	edc3	100	71.512	ENSCPBG00000024239	EDC3	100	71.512	Chrysemys_picta_bellii
ENSAMXG00000001589	edc3	100	37.378	ENSCING00000022142	-	99	37.525	Ciona_intestinalis
ENSAMXG00000001589	edc3	100	70.623	ENSCANG00000028699	EDC3	100	70.623	Colobus_angolensis_palliatus
ENSAMXG00000001589	edc3	100	71.176	ENSCGRG00001013874	Edc3	100	71.176	Cricetulus_griseus_chok1gshd
ENSAMXG00000001589	edc3	100	71.176	ENSCGRG00000011885	Edc3	100	71.176	Cricetulus_griseus_crigri
ENSAMXG00000001589	edc3	99	79.324	ENSCSEG00000012996	edc3	99	79.324	Cynoglossus_semilaevis
ENSAMXG00000001589	edc3	100	79.960	ENSCVAG00000008023	edc3	100	79.960	Cyprinodon_variegatus
ENSAMXG00000001589	edc3	99	85.347	ENSDARG00000051931	edc3	99	85.347	Danio_rerio
ENSAMXG00000001589	edc3	100	63.883	ENSDNOG00000030661	EDC3	100	63.883	Dasypus_novemcinctus
ENSAMXG00000001589	edc3	65	81.481	ENSETEG00000002398	-	64	81.481	Echinops_telfairi
ENSAMXG00000001589	edc3	100	70.703	ENSEASG00005005071	EDC3	100	70.703	Equus_asinus_asinus
ENSAMXG00000001589	edc3	100	70.703	ENSECAG00000017994	EDC3	100	70.703	Equus_caballus
ENSAMXG00000001589	edc3	100	75.542	ENSELUG00000005794	edc3	100	75.542	Esox_lucius
ENSAMXG00000001589	edc3	100	69.608	ENSELUG00000007607	EDC3	100	69.608	Esox_lucius
ENSAMXG00000001589	edc3	100	71.289	ENSFCAG00000002014	EDC3	100	71.289	Felis_catus
ENSAMXG00000001589	edc3	98	69.080	ENSFALG00000004543	EDC3	96	69.080	Ficedula_albicollis
ENSAMXG00000001589	edc3	100	70.817	ENSFDAG00000012582	EDC3	100	70.817	Fukomys_damarensis
ENSAMXG00000001589	edc3	100	79.960	ENSFHEG00000009375	edc3	100	79.960	Fundulus_heteroclitus
ENSAMXG00000001589	edc3	100	77.886	ENSGMOG00000002715	edc3	100	79.447	Gadus_morhua
ENSAMXG00000001589	edc3	100	71.624	ENSGALG00000040181	EDC3	100	71.624	Gallus_gallus
ENSAMXG00000001589	edc3	100	78.373	ENSGAFG00000014433	edc3	100	78.175	Gambusia_affinis
ENSAMXG00000001589	edc3	99	63.086	ENSGACG00000014671	EDC3	99	64.008	Gasterosteus_aculeatus
ENSAMXG00000001589	edc3	100	77.976	ENSGACG00000009783	edc3	100	77.976	Gasterosteus_aculeatus
ENSAMXG00000001589	edc3	100	71.260	ENSGAGG00000023477	EDC3	100	71.260	Gopherus_agassizii
ENSAMXG00000001589	edc3	100	70.520	ENSGGOG00000003552	EDC3	100	70.520	Gorilla_gorilla
ENSAMXG00000001589	edc3	100	79.762	ENSHBUG00000003635	edc3	100	79.762	Haplochromis_burtoni
ENSAMXG00000001589	edc3	100	63.654	ENSHBUG00000020817	EDC3	100	63.654	Haplochromis_burtoni
ENSAMXG00000001589	edc3	100	78.458	ENSHCOG00000016834	edc3	100	79.051	Hippocampus_comes
ENSAMXG00000001589	edc3	99	89.662	ENSIPUG00000005695	edc3	100	89.662	Ictalurus_punctatus
ENSAMXG00000001589	edc3	100	70.793	ENSSTOG00000013936	EDC3	100	70.793	Ictidomys_tridecemlineatus
ENSAMXG00000001589	edc3	100	71.289	ENSJJAG00000008074	Edc3	100	71.289	Jaculus_jaculus
ENSAMXG00000001589	edc3	100	61.886	ENSKMAG00000001987	EDC3	100	61.886	Kryptolebias_marmoratus
ENSAMXG00000001589	edc3	100	79.563	ENSKMAG00000001243	edc3	100	79.960	Kryptolebias_marmoratus
ENSAMXG00000001589	edc3	100	62.062	ENSLBEG00000017984	EDC3	100	62.062	Labrus_bergylta
ENSAMXG00000001589	edc3	100	80.556	ENSLBEG00000013435	edc3	99	80.754	Labrus_bergylta
ENSAMXG00000001589	edc3	100	72.222	ENSLACG00000014149	EDC3	100	72.222	Latimeria_chalumnae
ENSAMXG00000001589	edc3	99	75.542	ENSLOCG00000014625	edc3	99	75.937	Lepisosteus_oculatus
ENSAMXG00000001589	edc3	100	71.513	ENSLAFG00000002992	EDC3	100	71.513	Loxodonta_africana
ENSAMXG00000001589	edc3	100	70.955	ENSMFAG00000043074	EDC3	100	70.955	Macaca_fascicularis
ENSAMXG00000001589	edc3	100	70.955	ENSMMUG00000011071	EDC3	100	70.955	Macaca_mulatta
ENSAMXG00000001589	edc3	100	70.955	ENSMNEG00000035316	EDC3	100	70.955	Macaca_nemestrina
ENSAMXG00000001589	edc3	100	70.623	ENSMLEG00000030372	EDC3	100	70.623	Mandrillus_leucophaeus
ENSAMXG00000001589	edc3	99	61.840	ENSMAMG00000005423	-	99	61.840	Mastacembelus_armatus
ENSAMXG00000001589	edc3	100	80.952	ENSMAMG00000000505	edc3	100	80.952	Mastacembelus_armatus
ENSAMXG00000001589	edc3	100	79.563	ENSMZEG00005004892	edc3	100	79.563	Maylandia_zebra
ENSAMXG00000001589	edc3	100	64.637	ENSMZEG00005005654	EDC3	100	64.637	Maylandia_zebra
ENSAMXG00000001589	edc3	100	71.037	ENSMGAG00000002617	EDC3	100	71.037	Meleagris_gallopavo
ENSAMXG00000001589	edc3	100	71.289	ENSMICG00000043190	EDC3	100	71.289	Microcebus_murinus
ENSAMXG00000001589	edc3	100	70.703	ENSMOCG00000016205	Edc3	100	70.703	Microtus_ochrogaster
ENSAMXG00000001589	edc3	99	80.716	ENSMMOG00000012278	edc3	99	81.511	Mola_mola
ENSAMXG00000001589	edc3	100	70.543	ENSMODG00000009442	EDC3	100	70.543	Monodelphis_domestica
ENSAMXG00000001589	edc3	100	79.960	ENSMALG00000008658	edc3	100	79.960	Monopterus_albus
ENSAMXG00000001589	edc3	100	70.980	MGP_CAROLIEiJ_G0032280	Edc3	100	80.000	Mus_caroli
ENSAMXG00000001589	edc3	100	70.980	ENSMUSG00000038957	Edc3	100	80.000	Mus_musculus
ENSAMXG00000001589	edc3	100	70.980	MGP_PahariEiJ_G0015146	Edc3	100	80.000	Mus_pahari
ENSAMXG00000001589	edc3	100	70.588	MGP_SPRETEiJ_G0033420	Edc3	100	80.000	Mus_spretus
ENSAMXG00000001589	edc3	100	70.623	ENSMPUG00000017293	EDC3	100	70.623	Mustela_putorius_furo
ENSAMXG00000001589	edc3	100	71.206	ENSMLUG00000016382	EDC3	100	71.206	Myotis_lucifugus
ENSAMXG00000001589	edc3	100	70.485	ENSNGAG00000010923	Edc3	100	70.485	Nannospalax_galili
ENSAMXG00000001589	edc3	100	79.365	ENSNBRG00000002434	edc3	100	79.365	Neolamprologus_brichardi
ENSAMXG00000001589	edc3	100	64.637	ENSNBRG00000007881	EDC3	100	64.637	Neolamprologus_brichardi
ENSAMXG00000001589	edc3	100	61.284	ENSNLEG00000014577	EDC3	100	61.284	Nomascus_leucogenys
ENSAMXG00000001589	edc3	100	70.646	ENSMEUG00000009077	EDC3	100	70.646	Notamacropus_eugenii
ENSAMXG00000001589	edc3	80	81.481	ENSOPRG00000009540	-	79	81.481	Ochotona_princeps
ENSAMXG00000001589	edc3	100	65.437	ENSONIG00000002932	-	100	65.437	Oreochromis_niloticus
ENSAMXG00000001589	edc3	100	80.357	ENSONIG00000008434	edc3	100	80.357	Oreochromis_niloticus
ENSAMXG00000001589	edc3	78	67.662	ENSOCUG00000017740	EDC3	86	67.662	Oryctolagus_cuniculus
ENSAMXG00000001589	edc3	100	62.402	ENSORLG00000014399	-	98	62.402	Oryzias_latipes
ENSAMXG00000001589	edc3	100	77.183	ENSORLG00000004883	edc3	100	77.183	Oryzias_latipes
ENSAMXG00000001589	edc3	100	77.579	ENSORLG00020012262	edc3	100	77.579	Oryzias_latipes_hni
ENSAMXG00000001589	edc3	100	62.402	ENSORLG00020019446	-	100	62.402	Oryzias_latipes_hni
ENSAMXG00000001589	edc3	100	62.598	ENSORLG00015017635	-	96	62.598	Oryzias_latipes_hsok
ENSAMXG00000001589	edc3	100	77.579	ENSORLG00015005634	edc3	100	77.579	Oryzias_latipes_hsok
ENSAMXG00000001589	edc3	100	78.571	ENSOMEG00000014026	edc3	100	78.571	Oryzias_melastigma
ENSAMXG00000001589	edc3	100	61.886	ENSOMEG00000017354	EDC3	100	61.886	Oryzias_melastigma
ENSAMXG00000001589	edc3	100	71.373	ENSOGAG00000014441	EDC3	100	70.980	Otolemur_garnettii
ENSAMXG00000001589	edc3	100	69.455	ENSOARG00000003476	EDC3	100	69.844	Ovis_aries
ENSAMXG00000001589	edc3	100	70.520	ENSPPAG00000040143	EDC3	100	70.520	Pan_paniscus
ENSAMXG00000001589	edc3	100	71.094	ENSPPRG00000006257	EDC3	100	71.094	Panthera_pardus
ENSAMXG00000001589	edc3	100	71.094	ENSPTIG00000017424	EDC3	100	71.094	Panthera_tigris_altaica
ENSAMXG00000001589	edc3	100	70.520	ENSPTRG00000007279	EDC3	100	70.520	Pan_troglodytes
ENSAMXG00000001589	edc3	100	70.623	ENSPANG00000015997	EDC3	100	70.623	Papio_anubis
ENSAMXG00000001589	edc3	100	75.394	ENSPKIG00000019810	EDC3	100	75.394	Paramormyrops_kingsleyae
ENSAMXG00000001589	edc3	100	76.621	ENSPKIG00000004416	edc3	100	76.621	Paramormyrops_kingsleyae
ENSAMXG00000001589	edc3	100	65.134	ENSPSIG00000008474	EDC3	100	65.134	Pelodiscus_sinensis
ENSAMXG00000001589	edc3	100	77.953	ENSPMGG00000007223	edc3	100	77.953	Periophthalmus_magnuspinnatus
ENSAMXG00000001589	edc3	100	70.565	ENSPEMG00000015260	Edc3	100	70.565	Peromyscus_maniculatus_bairdii
ENSAMXG00000001589	edc3	100	70.254	ENSPCIG00000006276	EDC3	70	70.392	Phascolarctos_cinereus
ENSAMXG00000001589	edc3	100	80.159	ENSPFOG00000012204	edc3	100	80.159	Poecilia_formosa
ENSAMXG00000001589	edc3	100	80.159	ENSPLAG00000014420	edc3	100	80.159	Poecilia_latipinna
ENSAMXG00000001589	edc3	100	80.159	ENSPMEG00000023289	edc3	100	80.159	Poecilia_mexicana
ENSAMXG00000001589	edc3	100	79.563	ENSPREG00000016022	edc3	100	79.563	Poecilia_reticulata
ENSAMXG00000001589	edc3	100	69.557	ENSPPYG00000006642	EDC3	100	69.557	Pongo_abelii
ENSAMXG00000001589	edc3	89	81.481	ENSPCAG00000002802	EDC3	88	81.481	Procavia_capensis
ENSAMXG00000001589	edc3	100	71.289	ENSPCOG00000013364	EDC3	100	71.289	Propithecus_coquereli
ENSAMXG00000001589	edc3	100	71.765	ENSPVAG00000014733	EDC3	100	71.765	Pteropus_vampyrus
ENSAMXG00000001589	edc3	100	79.762	ENSPNYG00000021797	edc3	100	79.762	Pundamilia_nyererei
ENSAMXG00000001589	edc3	100	63.654	ENSPNYG00000009669	EDC3	100	63.654	Pundamilia_nyererei
ENSAMXG00000001589	edc3	100	92.857	ENSPNAG00000019657	edc3	100	92.857	Pygocentrus_nattereri
ENSAMXG00000001589	edc3	99	70.727	ENSRNOG00000019579	Edc3	99	70.370	Rattus_norvegicus
ENSAMXG00000001589	edc3	100	70.623	ENSRBIG00000019488	EDC3	100	70.623	Rhinopithecus_bieti
ENSAMXG00000001589	edc3	100	70.623	ENSRROG00000034959	EDC3	100	70.623	Rhinopithecus_roxellana
ENSAMXG00000001589	edc3	100	70.175	ENSSBOG00000004896	EDC3	100	70.175	Saimiri_boliviensis_boliviensis
ENSAMXG00000001589	edc3	96	69.919	ENSSHAG00000015075	EDC3	95	69.919	Sarcophilus_harrisii
ENSAMXG00000001589	edc3	100	72.047	ENSSFOG00015002439	edc3	100	72.157	Scleropages_formosus
ENSAMXG00000001589	edc3	100	79.412	ENSSFOG00015016939	edc3	100	80.315	Scleropages_formosus
ENSAMXG00000001589	edc3	99	63.780	ENSSMAG00000010176	-	99	63.780	Scophthalmus_maximus
ENSAMXG00000001589	edc3	100	79.960	ENSSMAG00000010695	edc3	100	80.556	Scophthalmus_maximus
ENSAMXG00000001589	edc3	100	81.151	ENSSDUG00000021844	edc3	100	81.944	Seriola_dumerili
ENSAMXG00000001589	edc3	100	66.667	ENSSDUG00000007671	EDC3	100	66.667	Seriola_dumerili
ENSAMXG00000001589	edc3	100	81.349	ENSSLDG00000022046	edc3	100	82.143	Seriola_lalandi_dorsalis
ENSAMXG00000001589	edc3	80	81.855	ENSSARG00000003907	EDC3	80	81.855	Sorex_araneus
ENSAMXG00000001589	edc3	100	69.455	ENSSPUG00000008232	EDC3	100	69.455	Sphenodon_punctatus
ENSAMXG00000001589	edc3	100	64.591	ENSSPAG00000020327	EDC3	100	64.591	Stegastes_partitus
ENSAMXG00000001589	edc3	100	81.349	ENSSPAG00000010009	edc3	100	81.349	Stegastes_partitus
ENSAMXG00000001589	edc3	100	70.680	ENSSSCG00000001903	EDC3	100	70.680	Sus_scrofa
ENSAMXG00000001589	edc3	100	70.577	ENSTGUG00000004007	EDC3	100	70.577	Taeniopygia_guttata
ENSAMXG00000001589	edc3	100	79.167	ENSTRUG00000017078	edc3	100	79.167	Takifugu_rubripes
ENSAMXG00000001589	edc3	100	79.447	ENSTNIG00000016047	edc3	100	79.447	Tetraodon_nigroviridis
ENSAMXG00000001589	edc3	100	70.760	ENSTTRG00000007990	EDC3	100	70.760	Tursiops_truncatus
ENSAMXG00000001589	edc3	100	71.094	ENSUAMG00000026710	-	100	71.094	Ursus_americanus
ENSAMXG00000001589	edc3	100	71.094	ENSUMAG00000005006	EDC3	96	71.094	Ursus_maritimus
ENSAMXG00000001589	edc3	80	72.222	ENSVPAG00000003499	-	79	72.222	Vicugna_pacos
ENSAMXG00000001589	edc3	100	70.898	ENSVVUG00000018601	EDC3	100	70.898	Vulpes_vulpes
ENSAMXG00000001589	edc3	69	75.072	ENSXETG00000010622	edc3	99	76.218	Xenopus_tropicalis
ENSAMXG00000001589	edc3	100	79.365	ENSXMAG00000007377	edc3	100	79.365	Xiphophorus_maculatus