EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000001647 (Gene tree)
Gene ID: -
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 8269 bases
Position: chr5:23707047-23715315
Accession: 103045496
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000001695	RRM_1	PF00076.22	2.1e-50	1	3
ENSAMXP00000001695	RRM_1	PF00076.22	2.1e-50	2	3
ENSAMXP00000001695	RRM_1	PF00076.22	2.1e-50	3	3
ENSAMXP00000001698	RRM_1	PF00076.22	5.5e-50	1	4
ENSAMXP00000001698	RRM_1	PF00076.22	5.5e-50	2	4
ENSAMXP00000001698	RRM_1	PF00076.22	5.5e-50	3	4
ENSAMXP00000001698	RRM_1	PF00076.22	5.5e-50	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000001695	-	1119	-	ENSAMXP00000001695	372 (aa)	-	W5K285
ENSAMXT00000001698	-	1995	XM_007256788	ENSAMXP00000001698	664 (aa)	XP_007256850	W5K288

Gene Model

Click here to download ENSAMXG00000001647's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000001647's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000001647	ncl	70	30.970	ENSAMXG00000018395	-	60	30.970

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000001647	ncl	81	74.247	ENSAPOG00000023888	ncl	66	70.416	Acanthochromis_polyacanthus
ENSAMXG00000001647	ncl	92	40.336	ENSAPOG00000014534	-	67	40.103	Acanthochromis_polyacanthus
ENSAMXG00000001647	ncl	81	68.771	ENSACIG00000013234	ncl	62	68.267	Amphilophus_citrinellus
ENSAMXG00000001647	ncl	92	39.216	ENSAOCG00000014792	-	61	39.948	Amphiprion_ocellaris
ENSAMXG00000001647	ncl	81	73.579	ENSAOCG00000003133	ncl	57	69.756	Amphiprion_ocellaris
ENSAMXG00000001647	ncl	81	73.579	ENSAPEG00000002769	ncl	57	69.512	Amphiprion_percula
ENSAMXG00000001647	ncl	92	39.496	ENSAPEG00000013612	-	60	40.206	Amphiprion_percula
ENSAMXG00000001647	ncl	81	71.572	ENSATEG00000013343	ncl	58	68.293	Anabas_testudineus
ENSAMXG00000001647	ncl	95	42.703	ENSATEG00000019862	-	80	42.132	Anabas_testudineus
ENSAMXG00000001647	ncl	81	59.477	ENSAPLG00000012897	-	63	57.672	Anas_platyrhynchos
ENSAMXG00000001647	ncl	81	62.376	ENSACAG00000001006	-	52	59.162	Anolis_carolinensis
ENSAMXG00000001647	ncl	81	66.777	ENSACLG00000026031	ncl	82	66.885	Astatotilapia_calliptera
ENSAMXG00000001647	ncl	77	40.625	ENSCHIG00000012665	-	55	39.740	Capra_hircus
ENSAMXG00000001647	ncl	70	46.552	ENSCHIG00000003401	-	53	46.491	Capra_hircus
ENSAMXG00000001647	ncl	81	62.092	ENSCPBG00000016444	-	56	60.477	Chrysemys_picta_bellii
ENSAMXG00000001647	ncl	84	69.967	ENSCSEG00000015089	ncl	56	69.967	Cynoglossus_semilaevis
ENSAMXG00000001647	ncl	82	71.382	ENSCVAG00000012600	ncl	54	68.883	Cyprinodon_variegatus
ENSAMXG00000001647	ncl	83	80.936	ENSDARG00000002710	ncl	79	80.328	Danio_rerio
ENSAMXG00000001647	ncl	80	45.973	ENSDNOG00000031611	-	67	46.133	Dasypus_novemcinctus
ENSAMXG00000001647	ncl	85	47.077	ENSEBUG00000016173	ncl	56	43.341	Eptatretus_burgeri
ENSAMXG00000001647	ncl	84	66.447	ENSELUG00000006033	ncl	54	65.591	Esox_lucius
ENSAMXG00000001647	ncl	82	49.671	ENSELUG00000022826	-	80	47.507	Esox_lucius
ENSAMXG00000001647	ncl	81	58.170	ENSFALG00000007592	-	54	56.316	Ficedula_albicollis
ENSAMXG00000001647	ncl	84	66.333	ENSFHEG00000018000	ncl	61	65.217	Fundulus_heteroclitus
ENSAMXG00000001647	ncl	83	62.460	ENSGMOG00000001341	ncl	64	60.723	Gadus_morhua
ENSAMXG00000001647	ncl	81	60.784	ENSGALG00000032930	NCL	55	58.575	Gallus_gallus
ENSAMXG00000001647	ncl	84	72.910	ENSGAFG00000015375	ncl	51	69.149	Gambusia_affinis
ENSAMXG00000001647	ncl	84	67.677	ENSGACG00000008970	ncl	55	67.340	Gasterosteus_aculeatus
ENSAMXG00000001647	ncl	81	61.438	ENSGAGG00000013330	-	56	59.416	Gopherus_agassizii
ENSAMXG00000001647	ncl	83	69.000	ENSHBUG00000006869	ncl	58	65.854	Haplochromis_burtoni
ENSAMXG00000001647	ncl	91	65.882	ENSHCOG00000010234	ncl	53	65.263	Hippocampus_comes
ENSAMXG00000001647	ncl	82	77.451	ENSIPUG00000024556	ncl	79	79.355	Ictalurus_punctatus
ENSAMXG00000001647	ncl	82	70.903	ENSKMAG00000008111	ncl	59	65.802	Kryptolebias_marmoratus
ENSAMXG00000001647	ncl	82	72.517	ENSLBEG00000019073	ncl	56	69.496	Labrus_bergylta
ENSAMXG00000001647	ncl	86	41.617	ENSLBEG00000007915	-	66	40.513	Labrus_bergylta
ENSAMXG00000001647	ncl	84	42.025	ENSLBEG00000014278	-	82	39.237	Labrus_bergylta
ENSAMXG00000001647	ncl	81	50.162	ENSLACG00000022167	-	79	48.128	Latimeria_chalumnae
ENSAMXG00000001647	ncl	82	66.450	ENSLACG00000009328	ncl	64	58.295	Latimeria_chalumnae
ENSAMXG00000001647	ncl	82	67.987	ENSLOCG00000004828	ncl	51	65.416	Lepisosteus_oculatus
ENSAMXG00000001647	ncl	91	40.171	ENSMAMG00000003479	-	69	39.691	Mastacembelus_armatus
ENSAMXG00000001647	ncl	80	69.000	ENSMZEG00005017438	ncl	58	65.610	Maylandia_zebra
ENSAMXG00000001647	ncl	81	60.458	ENSMGAG00000008147	-	84	62.115	Meleagris_gallopavo
ENSAMXG00000001647	ncl	82	69.937	ENSMMOG00000008553	ncl	82	72.459	Mola_mola
ENSAMXG00000001647	ncl	81	58.306	ENSMODG00000002470	-	54	55.699	Monodelphis_domestica
ENSAMXG00000001647	ncl	84	64.590	ENSMALG00000014827	ncl	51	31.679	Monopterus_albus
ENSAMXG00000001647	ncl	81	38.433	ENSMPUG00000001663	-	69	58.889	Mustela_putorius_furo
ENSAMXG00000001647	ncl	77	68.990	ENSNBRG00000001232	ncl	79	68.641	Neolamprologus_brichardi
ENSAMXG00000001647	ncl	77	68.990	ENSNBRG00000000146	-	82	68.641	Neolamprologus_brichardi
ENSAMXG00000001647	ncl	81	59.468	ENSMEUG00000012335	-	54	56.464	Notamacropus_eugenii
ENSAMXG00000001647	ncl	85	37.855	ENSONIG00000010631	-	97	37.736	Oreochromis_niloticus
ENSAMXG00000001647	ncl	83	69.000	ENSONIG00000012508	ncl	67	62.185	Oreochromis_niloticus
ENSAMXG00000001647	ncl	84	60.328	ENSOANG00000008732	-	61	56.136	Ornithorhynchus_anatinus
ENSAMXG00000001647	ncl	86	36.905	ENSORLG00000004645	-	84	35.101	Oryzias_latipes
ENSAMXG00000001647	ncl	83	72.241	ENSORLG00000007055	ncl	64	68.966	Oryzias_latipes
ENSAMXG00000001647	ncl	91	36.827	ENSORLG00020003497	-	76	35.768	Oryzias_latipes_hni
ENSAMXG00000001647	ncl	83	72.241	ENSORLG00020017943	ncl	64	68.966	Oryzias_latipes_hni
ENSAMXG00000001647	ncl	81	71.667	ENSORLG00015013815	ncl	84	71.475	Oryzias_latipes_hsok
ENSAMXG00000001647	ncl	86	37.952	ENSORLG00015006613	-	78	35.714	Oryzias_latipes_hsok
ENSAMXG00000001647	ncl	84	69.536	ENSOMEG00000020786	ncl	64	66.098	Oryzias_melastigma
ENSAMXG00000001647	ncl	84	35.714	ENSOMEG00000015864	-	82	35.325	Oryzias_melastigma
ENSAMXG00000001647	ncl	81	73.510	ENSPKIG00000002604	ncl	67	69.744	Paramormyrops_kingsleyae
ENSAMXG00000001647	ncl	81	73.000	ENSPMGG00000004709	ncl	79	72.964	Periophthalmus_magnuspinnatus
ENSAMXG00000001647	ncl	86	58.117	ENSPCIG00000003293	-	53	54.592	Phascolarctos_cinereus
ENSAMXG00000001647	ncl	80	71.572	ENSPFOG00000024205	ncl	55	66.829	Poecilia_formosa
ENSAMXG00000001647	ncl	80	71.572	ENSPLAG00000024026	ncl	51	67.905	Poecilia_latipinna
ENSAMXG00000001647	ncl	80	71.572	ENSPMEG00000006000	ncl	63	67.639	Poecilia_mexicana
ENSAMXG00000001647	ncl	80	69.000	ENSPNYG00000020494	ncl	58	65.610	Pundamilia_nyererei
ENSAMXG00000001647	ncl	80	83.278	ENSPNAG00000006192	ncl	56	78.398	Pygocentrus_nattereri
ENSAMXG00000001647	ncl	84	52.486	ENSSHAG00000007489	-	51	49.265	Sarcophilus_harrisii
ENSAMXG00000001647	ncl	86	53.870	ENSSHAG00000002702	-	62	51.238	Sarcophilus_harrisii
ENSAMXG00000001647	ncl	86	43.119	ENSSFOG00015013153	-	77	41.158	Scleropages_formosus
ENSAMXG00000001647	ncl	81	69.900	ENSSMAG00000021241	ncl	62	65.753	Scophthalmus_maximus
ENSAMXG00000001647	ncl	87	43.750	ENSSMAG00000007582	-	61	43.342	Scophthalmus_maximus
ENSAMXG00000001647	ncl	84	43.119	ENSSDUG00000010922	-	76	41.667	Seriola_dumerili
ENSAMXG00000001647	ncl	84	73.667	ENSSDUG00000006128	ncl	84	72.848	Seriola_dumerili
ENSAMXG00000001647	ncl	84	43.210	ENSSLDG00000015784	-	70	41.148	Seriola_lalandi_dorsalis
ENSAMXG00000001647	ncl	84	73.510	ENSSLDG00000002012	ncl	52	73.510	Seriola_lalandi_dorsalis
ENSAMXG00000001647	ncl	81	59.561	ENSSPUG00000008244	-	60	57.584	Sphenodon_punctatus
ENSAMXG00000001647	ncl	92	40.974	ENSSPAG00000001859	-	61	40.263	Stegastes_partitus
ENSAMXG00000001647	ncl	77	72.727	ENSSPAG00000002637	ncl	79	72.378	Stegastes_partitus
ENSAMXG00000001647	ncl	81	58.224	ENSTGUG00000009782	-	60	56.658	Taeniopygia_guttata
ENSAMXG00000001647	ncl	82	71.895	ENSTNIG00000012186	ncl	63	67.506	Tetraodon_nigroviridis
ENSAMXG00000001647	ncl	81	59.603	ENSXETG00000009517	ncl	74	58.245	Xenopus_tropicalis
ENSAMXG00000001647	ncl	89	37.427	ENSXCOG00000007369	-	91	40.065	Xiphophorus_couchianus
ENSAMXG00000001647	ncl	81	48.188	ENSXCOG00000003524	ncl	85	57.756	Xiphophorus_couchianus
ENSAMXG00000001647	ncl	84	72.910	ENSXMAG00000005914	ncl	56	68.537	Xiphophorus_maculatus