EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000001805 (Gene tree)
Gene ID: 103044643
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 9462 bases
Position: chr9:30912076-30921537
Accession: 103044643
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000001837	RRM_1	PF00076.22	2e-29	1	2
ENSAMXP00000001837	RRM_1	PF00076.22	2e-29	2	2
ENSAMXP00000038285	RRM_1	PF00076.22	2.5e-29	1	2
ENSAMXP00000038285	RRM_1	PF00076.22	2.5e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000040641	-	2425	XM_007231649	ENSAMXP00000038285	314 (aa)	XP_007231711	UPI0003CD764B
ENSAMXT00000001837	-	867	-	ENSAMXP00000001837	288 (aa)	-	W5K2M6

Gene Model

Click here to download ENSAMXG00000001805's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000001805's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000001805	trnau1apb	64	30.526	ENSAMXG00000037884	tia1l	77	30.114
ENSAMXG00000001805	trnau1apb	98	45.918	ENSAMXG00000013750	trnau1apa	95	44.551
ENSAMXG00000001805	trnau1apb	93	56.818	ENSAMXG00000029240	-	97	56.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000001805	trnau1apb	99	63.823	ENSAPOG00000010086	trnau1apb	99	66.667	Acanthochromis_polyacanthus
ENSAMXG00000001805	trnau1apb	99	67.500	ENSACIG00000001863	trnau1apb	99	65.938	Amphilophus_citrinellus
ENSAMXG00000001805	trnau1apb	99	66.568	ENSAOCG00000011891	trnau1apb	99	64.897	Amphiprion_ocellaris
ENSAMXG00000001805	trnau1apb	99	65.815	ENSAPEG00000008029	trnau1apb	99	66.562	Amphiprion_percula
ENSAMXG00000001805	trnau1apb	99	65.680	ENSATEG00000002196	trnau1apb	99	66.077	Anabas_testudineus
ENSAMXG00000001805	trnau1apb	99	66.769	ENSACLG00000003016	trnau1apb	99	64.923	Astatotilapia_calliptera
ENSAMXG00000001805	trnau1apb	97	63.142	ENSCSEG00000018215	trnau1apb	97	63.664	Cynoglossus_semilaevis
ENSAMXG00000001805	trnau1apb	94	58.333	ENSCVAG00000017866	trnau1apb	99	58.769	Cyprinodon_variegatus
ENSAMXG00000001805	trnau1apb	99	83.067	ENSDARG00000056475	trnau1apb	98	83.387	Danio_rerio
ENSAMXG00000001805	trnau1apb	99	74.843	ENSELUG00000016683	trnau1apb	98	76.415	Esox_lucius
ENSAMXG00000001805	trnau1apb	99	61.988	ENSFHEG00000001267	trnau1apb	99	61.404	Fundulus_heteroclitus
ENSAMXG00000001805	trnau1apb	98	61.631	ENSGMOG00000001160	trnau1apb	99	61.747	Gadus_morhua
ENSAMXG00000001805	trnau1apb	57	84.358	ENSGAFG00000006770	trnau1apb	99	65.409	Gambusia_affinis
ENSAMXG00000001805	trnau1apb	99	69.301	ENSGACG00000014944	trnau1apb	99	68.373	Gasterosteus_aculeatus
ENSAMXG00000001805	trnau1apb	68	46.512	ENSGAGG00000022384	-	77	44.186	Gopherus_agassizii
ENSAMXG00000001805	trnau1apb	99	67.797	ENSHBUG00000018944	trnau1apb	99	64.497	Haplochromis_burtoni
ENSAMXG00000001805	trnau1apb	78	72.294	ENSHCOG00000011350	trnau1apb	81	64.844	Hippocampus_comes
ENSAMXG00000001805	trnau1apb	99	88.535	ENSIPUG00000008843	tsp1l	99	90.764	Ictalurus_punctatus
ENSAMXG00000001805	trnau1apb	69	81.000	ENSKMAG00000010082	trnau1apb	99	62.757	Kryptolebias_marmoratus
ENSAMXG00000001805	trnau1apb	99	66.967	ENSLBEG00000020480	trnau1apb	99	66.766	Labrus_bergylta
ENSAMXG00000001805	trnau1apb	99	64.650	ENSLOCG00000013175	trnau1apb	98	63.898	Lepisosteus_oculatus
ENSAMXG00000001805	trnau1apb	99	66.071	ENSMAMG00000012192	trnau1apb	99	64.985	Mastacembelus_armatus
ENSAMXG00000001805	trnau1apb	99	66.172	ENSMZEG00005014852	trnau1apb	99	64.497	Maylandia_zebra
ENSAMXG00000001805	trnau1apb	68	45.833	ENSMGAG00000003234	-	98	44.186	Meleagris_gallopavo
ENSAMXG00000001805	trnau1apb	97	56.305	ENSMMOG00000021521	trnau1apb	100	56.433	Mola_mola
ENSAMXG00000001805	trnau1apb	99	62.342	ENSMALG00000003772	trnau1apb	99	64.952	Monopterus_albus
ENSAMXG00000001805	trnau1apb	97	67.398	ENSNBRG00000000751	trnau1apb	99	65.517	Neolamprologus_brichardi
ENSAMXG00000001805	trnau1apb	98	66.667	ENSONIG00000016639	trnau1apb	99	64.505	Oreochromis_niloticus
ENSAMXG00000001805	trnau1apb	63	81.000	ENSORLG00000013265	trnau1apb	99	63.848	Oryzias_latipes
ENSAMXG00000001805	trnau1apb	99	64.706	ENSORLG00020004464	trnau1apb	99	64.223	Oryzias_latipes_hni
ENSAMXG00000001805	trnau1apb	99	64.706	ENSORLG00015021098	trnau1apb	99	64.223	Oryzias_latipes_hsok
ENSAMXG00000001805	trnau1apb	63	80.000	ENSOMEG00000016531	trnau1apb	99	65.889	Oryzias_melastigma
ENSAMXG00000001805	trnau1apb	99	72.000	ENSPKIG00000007995	trnau1apb	98	71.385	Paramormyrops_kingsleyae
ENSAMXG00000001805	trnau1apb	68	47.442	ENSPSIG00000004189	-	77	45.413	Pelodiscus_sinensis
ENSAMXG00000001805	trnau1apb	98	59.933	ENSPMGG00000018509	trnau1apb	98	59.933	Periophthalmus_magnuspinnatus
ENSAMXG00000001805	trnau1apb	99	66.250	ENSPFOG00000003938	trnau1apb	99	64.706	Poecilia_formosa
ENSAMXG00000001805	trnau1apb	99	62.865	ENSPLAG00000015480	trnau1apb	99	62.573	Poecilia_latipinna
ENSAMXG00000001805	trnau1apb	99	62.865	ENSPMEG00000012743	trnau1apb	99	62.573	Poecilia_mexicana
ENSAMXG00000001805	trnau1apb	99	62.573	ENSPREG00000015035	trnau1apb	99	61.808	Poecilia_reticulata
ENSAMXG00000001805	trnau1apb	99	64.308	ENSPNYG00000012127	trnau1apb	99	62.462	Pundamilia_nyererei
ENSAMXG00000001805	trnau1apb	99	92.063	ENSPNAG00000019138	trnau1apb	98	93.333	Pygocentrus_nattereri
ENSAMXG00000001805	trnau1apb	99	73.171	ENSSFOG00015014158	trnau1apb	98	73.780	Scleropages_formosus
ENSAMXG00000001805	trnau1apb	97	64.848	ENSSMAG00000001745	trnau1apb	98	64.048	Scophthalmus_maximus
ENSAMXG00000001805	trnau1apb	99	65.089	ENSSDUG00000011109	trnau1apb	99	64.307	Seriola_dumerili
ENSAMXG00000001805	trnau1apb	99	65.385	ENSSLDG00000012947	trnau1apb	99	64.602	Seriola_lalandi_dorsalis
ENSAMXG00000001805	trnau1apb	68	36.293	ENSSPUG00000016701	-	82	35.573	Sphenodon_punctatus
ENSAMXG00000001805	trnau1apb	99	66.864	ENSSPAG00000006917	trnau1apb	99	67.974	Stegastes_partitus
ENSAMXG00000001805	trnau1apb	99	61.243	ENSTRUG00000008608	trnau1apb	99	60.588	Takifugu_rubripes
ENSAMXG00000001805	trnau1apb	98	61.386	ENSTNIG00000000916	trnau1apb	99	61.356	Tetraodon_nigroviridis
ENSAMXG00000001805	trnau1apb	93	61.639	ENSXCOG00000007974	trnau1apb	93	64.516	Xiphophorus_couchianus
ENSAMXG00000001805	trnau1apb	99	62.573	ENSXMAG00000029918	trnau1apb	99	62.281	Xiphophorus_maculatus