EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000001929 (Gene tree)
Gene ID: 103027632
Gene Symbol: prpf6
Alias: c20orf14|fc12b02|wu:fa05f07|wu:fc12b02|zgc:65913
Full Name: pre-mRNA processing factor 6
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 31250 bases
Position: chr15:30055415-30086664
Accession: 103027632
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000001965	PRP1_N	PF06424.12	2.8e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000001965	-	5137	XM_022677536	ENSAMXP00000001965	974 (aa)	XP_022533257	W5K304

Gene Model

Click here to download ENSAMXG00000001929's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000001929's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000001929	prpf6	96	92.660	ENSG00000101161	PRPF6	99	92.234	Homo_sapiens
ENSAMXG00000001929	prpf6	100	93.033	ENSAPOG00000010395	prpf6	97	94.597	Acanthochromis_polyacanthus
ENSAMXG00000001929	prpf6	96	91.763	ENSAMEG00000001916	PRPF6	99	91.341	Ailuropoda_melanoleuca
ENSAMXG00000001929	prpf6	100	92.930	ENSACIG00000019862	prpf6	97	94.703	Amphilophus_citrinellus
ENSAMXG00000001929	prpf6	100	93.135	ENSAOCG00000012988	prpf6	97	94.703	Amphiprion_ocellaris
ENSAMXG00000001929	prpf6	96	88.185	ENSAPEG00000008301	prpf6	99	88.292	Amphiprion_percula
ENSAMXG00000001929	prpf6	100	93.033	ENSATEG00000005581	prpf6	97	94.597	Anabas_testudineus
ENSAMXG00000001929	prpf6	96	92.698	ENSACAG00000006464	PRPF6	96	92.275	Anolis_carolinensis
ENSAMXG00000001929	prpf6	96	92.660	ENSANAG00000012661	PRPF6	99	92.925	Aotus_nancymaae
ENSAMXG00000001929	prpf6	100	92.828	ENSACLG00000025875	prpf6	97	94.597	Astatotilapia_calliptera
ENSAMXG00000001929	prpf6	96	93.191	ENSBTAG00000011656	PRPF6	99	92.766	Bos_taurus
ENSAMXG00000001929	prpf6	96	92.660	ENSCJAG00000010616	PRPF6	99	92.234	Callithrix_jacchus
ENSAMXG00000001929	prpf6	96	93.617	ENSCAFG00000013165	PRPF6	99	93.191	Canis_familiaris
ENSAMXG00000001929	prpf6	96	93.617	ENSCAFG00020002050	PRPF6	99	93.191	Canis_lupus_dingo
ENSAMXG00000001929	prpf6	96	93.191	ENSCHIG00000018187	PRPF6	99	92.766	Capra_hircus
ENSAMXG00000001929	prpf6	96	93.191	ENSTSYG00000007814	PRPF6	99	92.766	Carlito_syrichta
ENSAMXG00000001929	prpf6	93	92.148	ENSCAPG00000015077	PRPF6	100	91.276	Cavia_aperea
ENSAMXG00000001929	prpf6	96	93.511	ENSCPOG00000007518	PRPF6	99	93.085	Cavia_porcellus
ENSAMXG00000001929	prpf6	96	89.681	ENSCCAG00000024564	PRPF6	99	89.362	Cebus_capucinus
ENSAMXG00000001929	prpf6	96	92.766	ENSCATG00000037473	PRPF6	99	92.340	Cercocebus_atys
ENSAMXG00000001929	prpf6	96	89.894	ENSCLAG00000003854	PRPF6	99	89.468	Chinchilla_lanigera
ENSAMXG00000001929	prpf6	96	88.161	ENSCSAG00000016742	PRPF6	99	87.738	Chlorocebus_sabaeus
ENSAMXG00000001929	prpf6	81	77.561	ENSCHOG00000003315	-	98	77.355	Choloepus_hoffmanni
ENSAMXG00000001929	prpf6	98	92.012	ENSCPBG00000013964	PRPF6	97	92.797	Chrysemys_picta_bellii
ENSAMXG00000001929	prpf6	97	73.194	ENSCING00000008817	-	99	72.775	Ciona_intestinalis
ENSAMXG00000001929	prpf6	96	92.660	ENSCANG00000038230	PRPF6	99	92.234	Colobus_angolensis_palliatus
ENSAMXG00000001929	prpf6	96	93.723	ENSCGRG00001022666	Prpf6	99	93.298	Cricetulus_griseus_chok1gshd
ENSAMXG00000001929	prpf6	96	89.581	ENSCSEG00000018561	prpf6	99	89.581	Cynoglossus_semilaevis
ENSAMXG00000001929	prpf6	100	92.418	ENSCVAG00000010550	prpf6	97	94.280	Cyprinodon_variegatus
ENSAMXG00000001929	prpf6	100	94.974	ENSDARG00000091367	prpf6	100	95.767	Danio_rerio
ENSAMXG00000001929	prpf6	96	92.979	ENSDNOG00000040544	PRPF6	99	92.660	Dasypus_novemcinctus
ENSAMXG00000001929	prpf6	87	92.640	ENSDORG00000005406	Prpf6	100	92.640	Dipodomys_ordii
ENSAMXG00000001929	prpf6	95	70.968	FBgn0036828	CG6841	99	71.075	Drosophila_melanogaster
ENSAMXG00000001929	prpf6	82	91.667	ENSETEG00000004447	PRPF6	85	91.667	Echinops_telfairi
ENSAMXG00000001929	prpf6	96	86.138	ENSEBUG00000008835	prpf6	100	85.714	Eptatretus_burgeri
ENSAMXG00000001929	prpf6	97	92.429	ENSEASG00005023115	PRPF6	99	92.766	Equus_asinus_asinus
ENSAMXG00000001929	prpf6	96	89.043	ENSECAG00000013983	PRPF6	99	88.617	Equus_caballus
ENSAMXG00000001929	prpf6	86	100.000	ENSEEUG00000000180	PRPF6	81	100.000	Erinaceus_europaeus
ENSAMXG00000001929	prpf6	97	93.151	ENSELUG00000001945	prpf6	94	93.151	Esox_lucius
ENSAMXG00000001929	prpf6	96	93.298	ENSFCAG00000001183	PRPF6	99	92.872	Felis_catus
ENSAMXG00000001929	prpf6	97	92.565	ENSFALG00000010326	-	98	92.340	Ficedula_albicollis
ENSAMXG00000001929	prpf6	98	85.166	ENSFALG00000006046	-	98	86.378	Ficedula_albicollis
ENSAMXG00000001929	prpf6	96	92.021	ENSFDAG00000006451	PRPF6	100	92.630	Fukomys_damarensis
ENSAMXG00000001929	prpf6	97	94.597	ENSFHEG00000000560	prpf6	97	94.597	Fundulus_heteroclitus
ENSAMXG00000001929	prpf6	97	92.910	ENSGMOG00000015622	prpf6	99	92.373	Gadus_morhua
ENSAMXG00000001929	prpf6	96	93.511	ENSGALG00000006001	PRPF6	99	93.191	Gallus_gallus
ENSAMXG00000001929	prpf6	100	88.012	ENSGAFG00000021109	prpf6	97	89.513	Gambusia_affinis
ENSAMXG00000001929	prpf6	97	93.750	ENSGACG00000002576	prpf6	99	93.750	Gasterosteus_aculeatus
ENSAMXG00000001929	prpf6	98	91.892	ENSGAGG00000008653	PRPF6	97	92.691	Gopherus_agassizii
ENSAMXG00000001929	prpf6	96	92.660	ENSGGOG00000016876	PRPF6	99	92.234	Gorilla_gorilla
ENSAMXG00000001929	prpf6	100	92.828	ENSHBUG00000004496	prpf6	97	94.597	Haplochromis_burtoni
ENSAMXG00000001929	prpf6	96	93.511	ENSHGLG00000009222	PRPF6	99	93.085	Heterocephalus_glaber_female
ENSAMXG00000001929	prpf6	93	93.348	ENSHGLG00100016600	PRPF6	100	92.912	Heterocephalus_glaber_male
ENSAMXG00000001929	prpf6	100	91.393	ENSHCOG00000011513	prpf6	97	93.114	Hippocampus_comes
ENSAMXG00000001929	prpf6	100	94.980	ENSIPUG00000004912	prpf6	100	94.980	Ictalurus_punctatus
ENSAMXG00000001929	prpf6	96	90.967	ENSSTOG00000002922	PRPF6	99	90.117	Ictidomys_tridecemlineatus
ENSAMXG00000001929	prpf6	96	93.511	ENSJJAG00000000836	Prpf6	99	93.085	Jaculus_jaculus
ENSAMXG00000001929	prpf6	97	94.280	ENSKMAG00000017800	prpf6	97	94.280	Kryptolebias_marmoratus
ENSAMXG00000001929	prpf6	100	92.213	ENSLBEG00000012582	prpf6	97	93.856	Labrus_bergylta
ENSAMXG00000001929	prpf6	97	94.831	ENSLOCG00000004827	prpf6	97	93.038	Lepisosteus_oculatus
ENSAMXG00000001929	prpf6	96	92.979	ENSLAFG00000005272	PRPF6	99	92.553	Loxodonta_africana
ENSAMXG00000001929	prpf6	96	92.660	ENSMFAG00000037542	PRPF6	99	92.234	Macaca_fascicularis
ENSAMXG00000001929	prpf6	96	86.610	ENSMMUG00000015558	PRPF6	98	93.761	Macaca_mulatta
ENSAMXG00000001929	prpf6	96	79.852	ENSMNEG00000045555	PRPF6	99	79.427	Macaca_nemestrina
ENSAMXG00000001929	prpf6	100	92.520	ENSMAMG00000010718	prpf6	97	94.280	Mastacembelus_armatus
ENSAMXG00000001929	prpf6	97	94.286	ENSMZEG00005015261	-	100	94.286	Maylandia_zebra
ENSAMXG00000001929	prpf6	90	94.191	ENSMZEG00005026539	prpf6	100	94.191	Maylandia_zebra
ENSAMXG00000001929	prpf6	93	93.239	ENSMGAG00000006634	PRPF6	100	92.912	Meleagris_gallopavo
ENSAMXG00000001929	prpf6	96	93.723	ENSMAUG00000013969	Prpf6	99	93.298	Mesocricetus_auratus
ENSAMXG00000001929	prpf6	84	92.336	ENSMICG00000017793	PRPF6	98	92.355	Microcebus_murinus
ENSAMXG00000001929	prpf6	96	93.617	ENSMOCG00000001701	Prpf6	99	93.191	Microtus_ochrogaster
ENSAMXG00000001929	prpf6	96	94.092	ENSMMOG00000020419	prpf6	99	94.092	Mola_mola
ENSAMXG00000001929	prpf6	93	93.827	ENSMODG00000017051	PRPF6	99	93.333	Monodelphis_domestica
ENSAMXG00000001929	prpf6	95	94.583	ENSMALG00000000089	prpf6	100	94.583	Monopterus_albus
ENSAMXG00000001929	prpf6	96	87.340	MGP_CAROLIEiJ_G0024814	Prpf6	100	96.296	Mus_caroli
ENSAMXG00000001929	prpf6	96	93.723	ENSMUSG00000002455	Prpf6	100	96.296	Mus_musculus
ENSAMXG00000001929	prpf6	96	93.723	MGP_PahariEiJ_G0026262	Prpf6	100	96.296	Mus_pahari
ENSAMXG00000001929	prpf6	96	93.723	MGP_SPRETEiJ_G0025741	Prpf6	100	96.296	Mus_spretus
ENSAMXG00000001929	prpf6	86	93.179	ENSMPUG00000008673	PRPF6	98	93.179	Mustela_putorius_furo
ENSAMXG00000001929	prpf6	96	93.617	ENSNGAG00000003365	Prpf6	99	93.191	Nannospalax_galili
ENSAMXG00000001929	prpf6	100	92.930	ENSNBRG00000015025	prpf6	97	94.703	Neolamprologus_brichardi
ENSAMXG00000001929	prpf6	96	92.660	ENSNLEG00000010208	PRPF6	99	92.234	Nomascus_leucogenys
ENSAMXG00000001929	prpf6	96	84.137	ENSMEUG00000009824	-	90	84.387	Notamacropus_eugenii
ENSAMXG00000001929	prpf6	96	87.766	ENSODEG00000004841	PRPF6	99	87.340	Octodon_degus
ENSAMXG00000001929	prpf6	100	92.828	ENSONIG00000017406	prpf6	97	94.597	Oreochromis_niloticus
ENSAMXG00000001929	prpf6	96	93.617	ENSOANG00000004920	PRPF6	99	93.191	Ornithorhynchus_anatinus
ENSAMXG00000001929	prpf6	95	91.631	ENSOCUG00000014151	PRPF6	100	91.202	Oryctolagus_cuniculus
ENSAMXG00000001929	prpf6	100	91.803	ENSORLG00000009592	prpf6	97	93.326	Oryzias_latipes
ENSAMXG00000001929	prpf6	100	91.906	ENSORLG00020001458	prpf6	97	93.432	Oryzias_latipes_hni
ENSAMXG00000001929	prpf6	100	91.906	ENSORLG00015018762	prpf6	97	93.432	Oryzias_latipes_hsok
ENSAMXG00000001929	prpf6	100	92.213	ENSOMEG00000012174	prpf6	97	93.644	Oryzias_melastigma
ENSAMXG00000001929	prpf6	96	86.291	ENSOGAG00000007573	PRPF6	99	85.866	Otolemur_garnettii
ENSAMXG00000001929	prpf6	96	92.577	ENSOARG00000008776	PRPF6	99	92.153	Ovis_aries
ENSAMXG00000001929	prpf6	96	92.660	ENSPPAG00000008686	PRPF6	99	92.234	Pan_paniscus
ENSAMXG00000001929	prpf6	96	93.298	ENSPPRG00000008497	PRPF6	99	92.872	Panthera_pardus
ENSAMXG00000001929	prpf6	93	93.130	ENSPTIG00000011184	PRPF6	97	92.694	Panthera_tigris_altaica
ENSAMXG00000001929	prpf6	96	92.660	ENSPTRG00000013765	PRPF6	99	92.234	Pan_troglodytes
ENSAMXG00000001929	prpf6	96	92.447	ENSPANG00000024135	PRPF6	99	92.021	Papio_anubis
ENSAMXG00000001929	prpf6	97	95.042	ENSPKIG00000005627	prpf6	99	94.620	Paramormyrops_kingsleyae
ENSAMXG00000001929	prpf6	90	93.197	ENSPSIG00000007717	PRPF6	100	92.744	Pelodiscus_sinensis
ENSAMXG00000001929	prpf6	99	91.385	ENSPMGG00000008925	prpf6	97	92.381	Periophthalmus_magnuspinnatus
ENSAMXG00000001929	prpf6	96	93.723	ENSPEMG00000016036	Prpf6	99	93.298	Peromyscus_maniculatus_bairdii
ENSAMXG00000001929	prpf6	97	86.134	ENSPMAG00000006144	prpf6	100	86.134	Petromyzon_marinus
ENSAMXG00000001929	prpf6	96	93.723	ENSPCIG00000017909	PRPF6	99	93.298	Phascolarctos_cinereus
ENSAMXG00000001929	prpf6	100	91.777	ENSPFOG00000006431	prpf6	96	93.494	Poecilia_formosa
ENSAMXG00000001929	prpf6	100	92.520	ENSPLAG00000005974	prpf6	97	94.280	Poecilia_latipinna
ENSAMXG00000001929	prpf6	100	92.828	ENSPMEG00000009977	prpf6	97	94.492	Poecilia_mexicana
ENSAMXG00000001929	prpf6	100	92.930	ENSPREG00000017993	prpf6	92	94.597	Poecilia_reticulata
ENSAMXG00000001929	prpf6	96	92.128	ENSPPYG00000011256	PRPF6	99	91.702	Pongo_abelii
ENSAMXG00000001929	prpf6	91	95.261	ENSPCAG00000006536	PRPF6	88	94.608	Procavia_capensis
ENSAMXG00000001929	prpf6	96	92.766	ENSPCOG00000016881	PRPF6	99	92.340	Propithecus_coquereli
ENSAMXG00000001929	prpf6	96	87.021	ENSPVAG00000014316	PRPF6	99	86.596	Pteropus_vampyrus
ENSAMXG00000001929	prpf6	100	75.640	ENSPNYG00000001939	prpf6	96	83.051	Pundamilia_nyererei
ENSAMXG00000001929	prpf6	100	96.103	ENSPNAG00000015606	prpf6	100	96.103	Pygocentrus_nattereri
ENSAMXG00000001929	prpf6	96	93.723	ENSRNOG00000051498	Prpf6	99	93.298	Rattus_norvegicus
ENSAMXG00000001929	prpf6	96	92.660	ENSRBIG00000043613	PRPF6	99	92.234	Rhinopithecus_bieti
ENSAMXG00000001929	prpf6	96	89.936	ENSRROG00000040969	PRPF6	98	92.388	Rhinopithecus_roxellana
ENSAMXG00000001929	prpf6	87	89.912	ENSSBOG00000020632	PRPF6	93	87.716	Saimiri_boliviensis_boliviensis
ENSAMXG00000001929	prpf6	96	93.723	ENSSHAG00000016810	PRPF6	99	93.298	Sarcophilus_harrisii
ENSAMXG00000001929	prpf6	95	95.699	ENSSFOG00015020859	prpf6	100	95.269	Scleropages_formosus
ENSAMXG00000001929	prpf6	97	94.068	ENSSMAG00000008112	prpf6	97	94.068	Scophthalmus_maximus
ENSAMXG00000001929	prpf6	100	92.725	ENSSDUG00000016142	prpf6	97	94.597	Seriola_dumerili
ENSAMXG00000001929	prpf6	100	92.725	ENSSLDG00000025283	prpf6	97	94.597	Seriola_lalandi_dorsalis
ENSAMXG00000001929	prpf6	90	91.714	ENSSPUG00000018260	PRPF6	100	91.260	Sphenodon_punctatus
ENSAMXG00000001929	prpf6	100	92.623	ENSSPAG00000015850	prpf6	97	94.386	Stegastes_partitus
ENSAMXG00000001929	prpf6	97	91.710	ENSSSCG00000029119	PRPF6	98	92.610	Sus_scrofa
ENSAMXG00000001929	prpf6	96	93.319	ENSTGUG00000007221	PRPF6	99	93.001	Taeniopygia_guttata
ENSAMXG00000001929	prpf6	100	91.906	ENSTRUG00000002920	prpf6	97	93.750	Takifugu_rubripes
ENSAMXG00000001929	prpf6	96	87.261	ENSTNIG00000017873	prpf6	99	87.261	Tetraodon_nigroviridis
ENSAMXG00000001929	prpf6	85	94.444	ENSTBEG00000005348	PRPF6	85	92.222	Tupaia_belangeri
ENSAMXG00000001929	prpf6	96	93.191	ENSTTRG00000013068	PRPF6	99	92.766	Tursiops_truncatus
ENSAMXG00000001929	prpf6	94	91.630	ENSUMAG00000021631	PRPF6	98	91.196	Ursus_maritimus
ENSAMXG00000001929	prpf6	96	93.617	ENSVVUG00000014948	PRPF6	99	93.191	Vulpes_vulpes
ENSAMXG00000001929	prpf6	96	92.479	ENSXETG00000012054	prpf6	97	92.055	Xenopus_tropicalis
ENSAMXG00000001929	prpf6	100	92.828	ENSXCOG00000008082	prpf6	97	94.492	Xiphophorus_couchianus
ENSAMXG00000001929	prpf6	100	92.828	ENSXMAG00000015581	prpf6	97	94.492	Xiphophorus_maculatus