EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000002046 (Gene tree)
Gene ID: 103047070
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 8565 bases
Position: chrAPWO02000109.1:1888727-1897291
Accession: 103047070
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000002090	CMS1	PF14617.6	6.3e-36	1	1
ENSAMXP00000002090	DEAD	PF00270.29	8.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000002090	-	1317	XM_022665661	ENSAMXP00000002090	294 (aa)	XP_022521382	W5K3C9

Gene Model

Click here to download ENSAMXG00000002046's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000002046's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000002046	cmss1	100	46.959	ENSG00000184220	CMSS1	99	56.790	Homo_sapiens
ENSAMXG00000002046	cmss1	69	70.443	ENSAPOG00000010604	cmss1	81	70.000	Acanthochromis_polyacanthus
ENSAMXG00000002046	cmss1	82	52.869	ENSAMEG00000004092	CMSS1	78	54.726	Ailuropoda_melanoleuca
ENSAMXG00000002046	cmss1	69	57.635	ENSACIG00000021854	cmss1	74	57.000	Amphilophus_citrinellus
ENSAMXG00000002046	cmss1	100	57.432	ENSAOCG00000013361	cmss1	100	59.184	Amphiprion_ocellaris
ENSAMXG00000002046	cmss1	100	57.770	ENSAPEG00000005829	cmss1	100	60.544	Amphiprion_percula
ENSAMXG00000002046	cmss1	100	60.544	ENSATEG00000008209	cmss1	100	60.204	Anabas_testudineus
ENSAMXG00000002046	cmss1	69	61.386	ENSAPLG00000010542	CMSS1	87	61.500	Anas_platyrhynchos
ENSAMXG00000002046	cmss1	96	49.301	ENSACAG00000011065	CMSS1	73	57.500	Anolis_carolinensis
ENSAMXG00000002046	cmss1	100	45.151	ENSANAG00000023565	CMSS1	100	44.816	Aotus_nancymaae
ENSAMXG00000002046	cmss1	100	59.184	ENSACLG00000027294	cmss1	100	59.184	Astatotilapia_calliptera
ENSAMXG00000002046	cmss1	100	47.959	ENSBTAG00000013663	CMSS1	100	46.000	Bos_taurus
ENSAMXG00000002046	cmss1	100	48.814	ENSCJAG00000000610	CMSS1	100	47.826	Callithrix_jacchus
ENSAMXG00000002046	cmss1	82	53.279	ENSCAFG00000009230	CMSS1	72	55.000	Canis_familiaris
ENSAMXG00000002046	cmss1	69	54.950	ENSCAFG00020024156	-	63	54.500	Canis_lupus_dingo
ENSAMXG00000002046	cmss1	82	53.279	ENSCAFG00020009464	-	73	55.000	Canis_lupus_dingo
ENSAMXG00000002046	cmss1	84	52.439	ENSCHIG00000013003	CMSS1	72	56.500	Capra_hircus
ENSAMXG00000002046	cmss1	82	53.086	ENSTSYG00000009266	CMSS1	77	55.500	Carlito_syrichta
ENSAMXG00000002046	cmss1	74	47.005	ENSCAPG00000013584	CMSS1	88	50.265	Cavia_aperea
ENSAMXG00000002046	cmss1	100	47.667	ENSCPOG00000014680	CMSS1	100	46.580	Cavia_porcellus
ENSAMXG00000002046	cmss1	100	47.973	ENSCCAG00000034685	CMSS1	100	46.488	Cebus_capucinus
ENSAMXG00000002046	cmss1	100	46.959	ENSCATG00000031980	CMSS1	100	46.000	Cercocebus_atys
ENSAMXG00000002046	cmss1	68	55.500	ENSCLAG00000011241	CMSS1	86	55.500	Chinchilla_lanigera
ENSAMXG00000002046	cmss1	69	56.436	ENSCSAG00000006024	CMSS1	82	56.000	Chlorocebus_sabaeus
ENSAMXG00000002046	cmss1	100	36.242	ENSCHOG00000012098	CMSS1	100	36.667	Choloepus_hoffmanni
ENSAMXG00000002046	cmss1	64	40.314	ENSCING00000014848	-	99	40.107	Ciona_intestinalis
ENSAMXG00000002046	cmss1	100	46.959	ENSCANG00000031337	CMSS1	100	45.667	Colobus_angolensis_palliatus
ENSAMXG00000002046	cmss1	100	45.763	ENSCGRG00001014305	Cmss1	100	45.118	Cricetulus_griseus_chok1gshd
ENSAMXG00000002046	cmss1	78	52.174	ENSCGRG00000006722	Cmss1	78	55.000	Cricetulus_griseus_crigri
ENSAMXG00000002046	cmss1	100	54.209	ENSCSEG00000004958	cmss1	100	52.649	Cynoglossus_semilaevis
ENSAMXG00000002046	cmss1	100	57.143	ENSCVAG00000005039	cmss1	100	55.892	Cyprinodon_variegatus
ENSAMXG00000002046	cmss1	100	63.973	ENSDARG00000112579	cmss1	100	64.094	Danio_rerio
ENSAMXG00000002046	cmss1	83	48.971	ENSDNOG00000040418	CMSS1	72	54.000	Dasypus_novemcinctus
ENSAMXG00000002046	cmss1	100	47.157	ENSDORG00000010461	Cmss1	100	45.819	Dipodomys_ordii
ENSAMXG00000002046	cmss1	68	55.500	ENSEASG00005010966	CMSS1	91	55.500	Equus_asinus_asinus
ENSAMXG00000002046	cmss1	82	53.689	ENSECAG00000015662	CMSS1	88	56.500	Equus_caballus
ENSAMXG00000002046	cmss1	100	33.673	ENSEEUG00000007624	-	100	33.898	Erinaceus_europaeus
ENSAMXG00000002046	cmss1	100	55.592	ENSELUG00000019459	cmss1	100	56.250	Esox_lucius
ENSAMXG00000002046	cmss1	100	47.667	ENSFCAG00000044577	CMSS1	100	46.179	Felis_catus
ENSAMXG00000002046	cmss1	78	56.957	ENSFALG00000005816	CMSS1	95	56.522	Ficedula_albicollis
ENSAMXG00000002046	cmss1	69	55.446	ENSFDAG00000012577	CMSS1	88	55.000	Fukomys_damarensis
ENSAMXG00000002046	cmss1	79	60.345	ENSFHEG00000012008	cmss1	95	60.000	Fundulus_heteroclitus
ENSAMXG00000002046	cmss1	99	59.107	ENSGMOG00000016729	cmss1	100	56.997	Gadus_morhua
ENSAMXG00000002046	cmss1	89	54.511	ENSGALG00000015267	CMSS1	87	58.696	Gallus_gallus
ENSAMXG00000002046	cmss1	70	65.700	ENSGAFG00000021217	cmss1	76	64.500	Gambusia_affinis
ENSAMXG00000002046	cmss1	99	56.014	ENSGACG00000002798	cmss1	100	54.882	Gasterosteus_aculeatus
ENSAMXG00000002046	cmss1	92	50.923	ENSGAGG00000019861	CMSS1	88	55.652	Gopherus_agassizii
ENSAMXG00000002046	cmss1	82	51.440	ENSGGOG00000014125	CMSS1	77	55.500	Gorilla_gorilla
ENSAMXG00000002046	cmss1	100	59.524	ENSHBUG00000008431	cmss1	100	57.483	Haplochromis_burtoni
ENSAMXG00000002046	cmss1	68	55.000	ENSHGLG00000019481	CMSS1	82	55.000	Heterocephalus_glaber_female
ENSAMXG00000002046	cmss1	68	55.000	ENSHGLG00100010314	CMSS1	80	55.000	Heterocephalus_glaber_male
ENSAMXG00000002046	cmss1	100	52.412	ENSHCOG00000003222	cmss1	100	55.892	Hippocampus_comes
ENSAMXG00000002046	cmss1	100	70.748	ENSIPUG00000011591	cmss1	100	68.707	Ictalurus_punctatus
ENSAMXG00000002046	cmss1	100	46.885	ENSSTOG00000019366	CMSS1	100	46.667	Ictidomys_tridecemlineatus
ENSAMXG00000002046	cmss1	100	48.148	ENSJJAG00000014894	Cmss1	100	46.026	Jaculus_jaculus
ENSAMXG00000002046	cmss1	69	58.621	ENSKMAG00000002390	cmss1	80	58.000	Kryptolebias_marmoratus
ENSAMXG00000002046	cmss1	69	65.686	ENSLBEG00000006298	cmss1	82	65.174	Labrus_bergylta
ENSAMXG00000002046	cmss1	69	60.891	ENSLACG00000009293	CMSS1	87	61.000	Latimeria_chalumnae
ENSAMXG00000002046	cmss1	100	50.508	ENSLOCG00000009391	cmss1	100	48.299	Lepisosteus_oculatus
ENSAMXG00000002046	cmss1	79	54.310	ENSLAFG00000017509	CMSS1	88	55.000	Loxodonta_africana
ENSAMXG00000002046	cmss1	100	46.622	ENSMFAG00000045006	CMSS1	100	45.333	Macaca_fascicularis
ENSAMXG00000002046	cmss1	100	46.284	ENSMMUG00000002939	CMSS1	100	45.000	Macaca_mulatta
ENSAMXG00000002046	cmss1	100	46.622	ENSMNEG00000031315	CMSS1	100	45.333	Macaca_nemestrina
ENSAMXG00000002046	cmss1	100	47.297	ENSMLEG00000033660	CMSS1	100	46.000	Mandrillus_leucophaeus
ENSAMXG00000002046	cmss1	100	62.925	ENSMAMG00000017176	cmss1	100	62.925	Mastacembelus_armatus
ENSAMXG00000002046	cmss1	100	59.184	ENSMZEG00005021886	cmss1	100	59.184	Maylandia_zebra
ENSAMXG00000002046	cmss1	78	58.696	ENSMGAG00000014360	CMSS1	99	58.696	Meleagris_gallopavo
ENSAMXG00000002046	cmss1	100	46.465	ENSMICG00000048977	CMSS1	100	46.465	Microcebus_murinus
ENSAMXG00000002046	cmss1	100	46.259	ENSMOCG00000021937	Cmss1	100	46.259	Microtus_ochrogaster
ENSAMXG00000002046	cmss1	89	58.397	ENSMMOG00000019794	cmss1	83	67.000	Mola_mola
ENSAMXG00000002046	cmss1	90	48.872	ENSMODG00000002275	CMSS1	85	52.609	Monodelphis_domestica
ENSAMXG00000002046	cmss1	100	62.245	ENSMALG00000004250	cmss1	100	61.224	Monopterus_albus
ENSAMXG00000002046	cmss1	100	46.284	MGP_CAROLIEiJ_G0020824	Cmss1	100	46.284	Mus_caroli
ENSAMXG00000002046	cmss1	100	46.622	ENSMUSG00000022748	Cmss1	100	46.622	Mus_musculus
ENSAMXG00000002046	cmss1	100	45.946	MGP_PahariEiJ_G0016524	Cmss1	100	45.918	Mus_pahari
ENSAMXG00000002046	cmss1	100	46.284	MGP_SPRETEiJ_G0021724	Cmss1	100	46.284	Mus_spretus
ENSAMXG00000002046	cmss1	82	52.675	ENSMPUG00000011324	CMSS1	77	54.774	Mustela_putorius_furo
ENSAMXG00000002046	cmss1	68	54.455	ENSMLUG00000001131	CMSS1	77	54.455	Myotis_lucifugus
ENSAMXG00000002046	cmss1	100	48.649	ENSNGAG00000020316	Cmss1	100	47.157	Nannospalax_galili
ENSAMXG00000002046	cmss1	100	59.524	ENSNBRG00000003095	cmss1	100	59.524	Neolamprologus_brichardi
ENSAMXG00000002046	cmss1	100	47.297	ENSNLEG00000034172	CMSS1	100	45.973	Nomascus_leucogenys
ENSAMXG00000002046	cmss1	69	46.040	ENSMEUG00000014505	CMSS1	88	46.000	Notamacropus_eugenii
ENSAMXG00000002046	cmss1	100	47.492	ENSOPRG00000002986	CMSS1	100	47.157	Ochotona_princeps
ENSAMXG00000002046	cmss1	100	40.461	ENSODEG00000001853	-	100	39.262	Octodon_degus
ENSAMXG00000002046	cmss1	100	46.441	ENSODEG00000003558	-	100	44.558	Octodon_degus
ENSAMXG00000002046	cmss1	69	45.545	ENSODEG00000009446	-	77	45.000	Octodon_degus
ENSAMXG00000002046	cmss1	100	47.000	ENSODEG00000005226	-	100	46.000	Octodon_degus
ENSAMXG00000002046	cmss1	69	65.517	ENSONIG00000006678	cmss1	77	65.000	Oreochromis_niloticus
ENSAMXG00000002046	cmss1	83	51.837	ENSOANG00000007529	CMSS1	99	53.478	Ornithorhynchus_anatinus
ENSAMXG00000002046	cmss1	82	52.675	ENSOCUG00000025366	CMSS1	72	55.500	Oryctolagus_cuniculus
ENSAMXG00000002046	cmss1	100	59.596	ENSORLG00000020340	cmss1	100	55.782	Oryzias_latipes
ENSAMXG00000002046	cmss1	88	50.579	ENSORLG00020012235	cmss1	85	56.000	Oryzias_latipes_hni
ENSAMXG00000002046	cmss1	90	52.963	ENSORLG00015015551	cmss1	75	57.000	Oryzias_latipes_hsok
ENSAMXG00000002046	cmss1	100	59.184	ENSOMEG00000012555	cmss1	100	58.784	Oryzias_melastigma
ENSAMXG00000002046	cmss1	69	54.950	ENSOGAG00000002045	CMSS1	88	54.500	Otolemur_garnettii
ENSAMXG00000002046	cmss1	84	52.227	ENSOARG00000017899	CMSS1	69	56.219	Ovis_aries
ENSAMXG00000002046	cmss1	82	51.440	ENSPPAG00000038515	CMSS1	74	55.500	Pan_paniscus
ENSAMXG00000002046	cmss1	100	47.667	ENSPPRG00000016767	CMSS1	100	46.622	Panthera_pardus
ENSAMXG00000002046	cmss1	100	47.333	ENSPTIG00000018274	CMSS1	100	46.154	Panthera_tigris_altaica
ENSAMXG00000002046	cmss1	100	47.297	ENSPTRG00000015157	CMSS1	100	45.847	Pan_troglodytes
ENSAMXG00000002046	cmss1	69	56.436	ENSPANG00000019980	CMSS1	80	56.000	Papio_anubis
ENSAMXG00000002046	cmss1	93	59.191	ENSPKIG00000012609	cmss1	97	58.736	Paramormyrops_kingsleyae
ENSAMXG00000002046	cmss1	69	59.901	ENSPSIG00000003849	CMSS1	99	56.957	Pelodiscus_sinensis
ENSAMXG00000002046	cmss1	69	65.686	ENSPMGG00000010286	cmss1	86	65.174	Periophthalmus_magnuspinnatus
ENSAMXG00000002046	cmss1	100	48.475	ENSPEMG00000016384	Cmss1	100	45.819	Peromyscus_maniculatus_bairdii
ENSAMXG00000002046	cmss1	69	52.941	ENSPMAG00000001146	cmss1	98	52.500	Petromyzon_marinus
ENSAMXG00000002046	cmss1	96	47.163	ENSPCIG00000015656	CMSS1	76	54.500	Phascolarctos_cinereus
ENSAMXG00000002046	cmss1	100	54.762	ENSPFOG00000016849	cmss1	100	53.872	Poecilia_formosa
ENSAMXG00000002046	cmss1	100	54.422	ENSPLAG00000008323	cmss1	100	53.535	Poecilia_latipinna
ENSAMXG00000002046	cmss1	100	55.782	ENSPMEG00000021020	cmss1	100	55.782	Poecilia_mexicana
ENSAMXG00000002046	cmss1	88	56.757	ENSPREG00000007618	cmss1	68	62.500	Poecilia_reticulata
ENSAMXG00000002046	cmss1	100	47.458	ENSPPYG00000013606	CMSS1	100	46.309	Pongo_abelii
ENSAMXG00000002046	cmss1	100	47.797	ENSPCOG00000020035	CMSS1	100	46.801	Propithecus_coquereli
ENSAMXG00000002046	cmss1	100	41.356	ENSPVAG00000017031	CMSS1	100	38.591	Pteropus_vampyrus
ENSAMXG00000002046	cmss1	93	60.073	ENSPNYG00000013428	cmss1	97	60.821	Pundamilia_nyererei
ENSAMXG00000002046	cmss1	100	75.421	ENSPNAG00000007912	cmss1	100	75.084	Pygocentrus_nattereri
ENSAMXG00000002046	cmss1	84	50.813	ENSRNOG00000027888	Cmss1	88	52.609	Rattus_norvegicus
ENSAMXG00000002046	cmss1	100	47.635	ENSRBIG00000037931	CMSS1	100	46.780	Rhinopithecus_bieti
ENSAMXG00000002046	cmss1	100	47.635	ENSRROG00000042910	CMSS1	100	46.780	Rhinopithecus_roxellana
ENSAMXG00000002046	cmss1	82	52.263	ENSSBOG00000030980	CMSS1	76	55.000	Saimiri_boliviensis_boliviensis
ENSAMXG00000002046	cmss1	69	54.950	ENSSHAG00000009321	CMSS1	79	55.000	Sarcophilus_harrisii
ENSAMXG00000002046	cmss1	100	58.644	ENSSFOG00015001509	cmss1	100	57.483	Scleropages_formosus
ENSAMXG00000002046	cmss1	100	57.483	ENSSMAG00000001653	cmss1	100	56.803	Scophthalmus_maximus
ENSAMXG00000002046	cmss1	100	59.864	ENSSDUG00000007719	cmss1	100	58.844	Seriola_dumerili
ENSAMXG00000002046	cmss1	70	67.633	ENSSLDG00000012300	cmss1	67	67.000	Seriola_lalandi_dorsalis
ENSAMXG00000002046	cmss1	100	40.404	ENSSARG00000003584	CMSS1	100	39.057	Sorex_araneus
ENSAMXG00000002046	cmss1	69	58.416	ENSSPUG00000003865	CMSS1	88	58.500	Sphenodon_punctatus
ENSAMXG00000002046	cmss1	70	71.845	ENSSPAG00000019182	cmss1	62	71.000	Stegastes_partitus
ENSAMXG00000002046	cmss1	100	46.780	ENSSSCG00000011970	CMSS1	100	44.966	Sus_scrofa
ENSAMXG00000002046	cmss1	78	57.826	ENSTGUG00000013635	CMSS1	99	58.261	Taeniopygia_guttata
ENSAMXG00000002046	cmss1	100	59.864	ENSTRUG00000015265	cmss1	100	57.823	Takifugu_rubripes
ENSAMXG00000002046	cmss1	69	63.547	ENSTNIG00000002880	cmss1	72	63.000	Tetraodon_nigroviridis
ENSAMXG00000002046	cmss1	69	38.119	ENSTBEG00000016722	CMSS1	71	37.500	Tupaia_belangeri
ENSAMXG00000002046	cmss1	100	46.441	ENSTTRG00000001562	CMSS1	100	45.238	Tursiops_truncatus
ENSAMXG00000002046	cmss1	82	53.086	ENSUAMG00000024209	CMSS1	90	55.000	Ursus_americanus
ENSAMXG00000002046	cmss1	82	53.086	ENSUMAG00000001983	CMSS1	77	55.000	Ursus_maritimus
ENSAMXG00000002046	cmss1	54	56.250	ENSVPAG00000000263	CMSS1	57	56.250	Vicugna_pacos
ENSAMXG00000002046	cmss1	82	53.689	ENSVVUG00000021647	-	81	55.000	Vulpes_vulpes
ENSAMXG00000002046	cmss1	69	54.455	ENSVVUG00000007776	-	79	54.000	Vulpes_vulpes
ENSAMXG00000002046	cmss1	100	52.542	ENSXETG00000011858	cmss1	100	48.814	Xenopus_tropicalis
ENSAMXG00000002046	cmss1	94	55.435	ENSXCOG00000018724	cmss1	68	63.500	Xiphophorus_couchianus
ENSAMXG00000002046	cmss1	88	57.529	ENSXMAG00000011243	cmss1	75	63.500	Xiphophorus_maculatus