EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000002219 (Gene tree)
Gene ID: 103043813
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 18096 bases
Position: chr19:34878173-34896268
Accession: 103043813
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000002266	SF3b1	PF08920.10	4.5e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000002266	-	6827	XM_007227766	ENSAMXP00000002266	1315 (aa)	XP_007227828	W5K3V5

Gene Model

Click here to download ENSAMXG00000002219's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000002219's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000002219	sf3b1	100	93.997	ENSG00000115524	SF3B1	100	94.149	Homo_sapiens
ENSAMXG00000002219	sf3b1	100	97.112	ENSAPOG00000011894	sf3b1	100	97.112	Acanthochromis_polyacanthus
ENSAMXG00000002219	sf3b1	99	93.884	ENSAMEG00000013809	SF3B1	99	94.037	Ailuropoda_melanoleuca
ENSAMXG00000002219	sf3b1	100	95.821	ENSACIG00000020910	sf3b1	97	95.821	Amphilophus_citrinellus
ENSAMXG00000002219	sf3b1	100	97.112	ENSAOCG00000004478	sf3b1	100	97.112	Amphiprion_ocellaris
ENSAMXG00000002219	sf3b1	100	97.112	ENSAPEG00000012937	sf3b1	100	97.112	Amphiprion_percula
ENSAMXG00000002219	sf3b1	100	97.340	ENSATEG00000020435	sf3b1	100	97.340	Anabas_testudineus
ENSAMXG00000002219	sf3b1	99	94.104	ENSAPLG00000003993	SF3B1	99	94.104	Anas_platyrhynchos
ENSAMXG00000002219	sf3b1	100	93.916	ENSACAG00000009612	SF3B1	100	93.916	Anolis_carolinensis
ENSAMXG00000002219	sf3b1	100	93.997	ENSANAG00000021577	SF3B1	100	95.377	Aotus_nancymaae
ENSAMXG00000002219	sf3b1	100	95.973	ENSACLG00000023470	sf3b1	100	95.973	Astatotilapia_calliptera
ENSAMXG00000002219	sf3b1	100	93.997	ENSBTAG00000008915	SF3B1	100	94.149	Bos_taurus
ENSAMXG00000002219	sf3b1	99	64.307	WBGene00011605	sftb-1	99	64.307	Caenorhabditis_elegans
ENSAMXG00000002219	sf3b1	100	93.997	ENSCJAG00000003902	SF3B1	100	94.149	Callithrix_jacchus
ENSAMXG00000002219	sf3b1	100	93.997	ENSCAFG00000010826	SF3B1	100	94.149	Canis_familiaris
ENSAMXG00000002219	sf3b1	100	93.997	ENSCAFG00020004750	SF3B1	100	94.149	Canis_lupus_dingo
ENSAMXG00000002219	sf3b1	100	93.997	ENSCHIG00000015226	SF3B1	100	94.149	Capra_hircus
ENSAMXG00000002219	sf3b1	100	93.921	ENSTSYG00000009214	SF3B1	100	94.073	Carlito_syrichta
ENSAMXG00000002219	sf3b1	99	93.826	ENSCAPG00000006547	SF3B1	99	93.979	Cavia_aperea
ENSAMXG00000002219	sf3b1	99	93.951	ENSCPOG00000009353	SF3B1	100	94.104	Cavia_porcellus
ENSAMXG00000002219	sf3b1	100	93.997	ENSCCAG00000020506	SF3B1	100	94.149	Cebus_capucinus
ENSAMXG00000002219	sf3b1	100	93.997	ENSCATG00000035735	SF3B1	100	94.149	Cercocebus_atys
ENSAMXG00000002219	sf3b1	99	93.956	ENSCLAG00000014767	SF3B1	99	94.109	Chinchilla_lanigera
ENSAMXG00000002219	sf3b1	100	93.997	ENSCSAG00000011505	SF3B1	100	94.149	Chlorocebus_sabaeus
ENSAMXG00000002219	sf3b1	83	92.816	ENSCHOG00000009860	SF3B1	76	92.816	Choloepus_hoffmanni
ENSAMXG00000002219	sf3b1	100	94.068	ENSCPBG00000021902	SF3B1	99	95.122	Chrysemys_picta_bellii
ENSAMXG00000002219	sf3b1	69	77.863	ENSCING00000002558	-	99	78.084	Ciona_intestinalis
ENSAMXG00000002219	sf3b1	99	79.774	ENSCSAVG00000002559	-	99	79.790	Ciona_savignyi
ENSAMXG00000002219	sf3b1	100	93.997	ENSCANG00000029415	SF3B1	100	94.149	Colobus_angolensis_palliatus
ENSAMXG00000002219	sf3b1	100	93.997	ENSCGRG00001016990	Sf3b1	100	94.149	Cricetulus_griseus_chok1gshd
ENSAMXG00000002219	sf3b1	100	93.997	ENSCGRG00000005301	Sf3b1	100	94.149	Cricetulus_griseus_crigri
ENSAMXG00000002219	sf3b1	100	92.781	ENSCSEG00000003860	sf3b1	100	92.781	Cynoglossus_semilaevis
ENSAMXG00000002219	sf3b1	96	96.996	ENSCVAG00000003680	sf3b1	99	96.996	Cyprinodon_variegatus
ENSAMXG00000002219	sf3b1	100	97.115	ENSDARG00000056138	sf3b1	100	97.115	Danio_rerio
ENSAMXG00000002219	sf3b1	100	93.926	ENSDNOG00000011754	SF3B1	100	94.077	Dasypus_novemcinctus
ENSAMXG00000002219	sf3b1	99	92.113	ENSDORG00000002399	Sf3b1	100	92.113	Dipodomys_ordii
ENSAMXG00000002219	sf3b1	100	75.733	FBgn0031266	Sf3b1	100	75.733	Drosophila_melanogaster
ENSAMXG00000002219	sf3b1	83	92.936	ENSETEG00000009188	SF3B1	100	93.119	Echinops_telfairi
ENSAMXG00000002219	sf3b1	99	85.671	ENSEBUG00000004325	sf3b1	100	88.640	Eptatretus_burgeri
ENSAMXG00000002219	sf3b1	100	93.997	ENSEASG00005020159	SF3B1	98	94.149	Equus_asinus_asinus
ENSAMXG00000002219	sf3b1	100	93.997	ENSECAG00000021657	SF3B1	98	94.149	Equus_caballus
ENSAMXG00000002219	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSAMXG00000002219	sf3b1	100	96.299	ENSELUG00000005977	sf3b1	98	96.299	Esox_lucius
ENSAMXG00000002219	sf3b1	100	93.997	ENSFCAG00000005038	SF3B1	100	94.149	Felis_catus
ENSAMXG00000002219	sf3b1	99	94.028	ENSFALG00000004281	SF3B1	99	94.028	Ficedula_albicollis
ENSAMXG00000002219	sf3b1	100	93.997	ENSFDAG00000017510	SF3B1	100	94.149	Fukomys_damarensis
ENSAMXG00000002219	sf3b1	100	96.128	ENSFHEG00000014333	sf3b1	100	96.128	Fundulus_heteroclitus
ENSAMXG00000002219	sf3b1	100	95.679	ENSGMOG00000006773	sf3b1	100	95.982	Gadus_morhua
ENSAMXG00000002219	sf3b1	100	94.144	ENSGALG00000008038	SF3B1	100	94.144	Gallus_gallus
ENSAMXG00000002219	sf3b1	98	96.839	ENSGAFG00000000704	sf3b1	100	96.839	Gambusia_affinis
ENSAMXG00000002219	sf3b1	100	96.203	ENSGACG00000008839	sf3b1	100	96.203	Gasterosteus_aculeatus
ENSAMXG00000002219	sf3b1	100	93.429	ENSGAGG00000017478	SF3B1	100	93.429	Gopherus_agassizii
ENSAMXG00000002219	sf3b1	99	88.456	ENSGGOG00000009264	SF3B1	99	88.685	Gorilla_gorilla
ENSAMXG00000002219	sf3b1	99	96.043	ENSHBUG00000007705	sf3b1	99	96.043	Haplochromis_burtoni
ENSAMXG00000002219	sf3b1	99	93.956	ENSHGLG00000008285	-	99	94.109	Heterocephalus_glaber_female
ENSAMXG00000002219	sf3b1	99	91.966	ENSHGLG00100005535	-	99	92.119	Heterocephalus_glaber_male
ENSAMXG00000002219	sf3b1	100	96.145	ENSHCOG00000016775	sf3b1	100	96.145	Hippocampus_comes
ENSAMXG00000002219	sf3b1	100	98.631	ENSIPUG00000013171	sf3b1	100	98.631	Ictalurus_punctatus
ENSAMXG00000002219	sf3b1	100	93.997	ENSSTOG00000011034	SF3B1	100	94.149	Ictidomys_tridecemlineatus
ENSAMXG00000002219	sf3b1	99	93.932	ENSJJAG00000010903	Sf3b1	99	94.086	Jaculus_jaculus
ENSAMXG00000002219	sf3b1	100	96.437	ENSKMAG00000004009	sf3b1	100	96.437	Kryptolebias_marmoratus
ENSAMXG00000002219	sf3b1	100	96.505	ENSLBEG00000022208	sf3b1	100	96.505	Labrus_bergylta
ENSAMXG00000002219	sf3b1	99	90.875	ENSLACG00000014832	SF3B1	99	90.951	Latimeria_chalumnae
ENSAMXG00000002219	sf3b1	100	95.764	ENSLOCG00000003899	sf3b1	100	95.764	Lepisosteus_oculatus
ENSAMXG00000002219	sf3b1	100	93.997	ENSLAFG00000001956	SF3B1	100	94.149	Loxodonta_africana
ENSAMXG00000002219	sf3b1	99	93.956	ENSMMUG00000022430	SF3B1	99	94.109	Macaca_mulatta
ENSAMXG00000002219	sf3b1	100	93.997	ENSMNEG00000042333	SF3B1	100	95.377	Macaca_nemestrina
ENSAMXG00000002219	sf3b1	94	88.656	ENSMLEG00000026141	SF3B1	98	89.148	Mandrillus_leucophaeus
ENSAMXG00000002219	sf3b1	100	97.036	ENSMAMG00000010241	sf3b1	100	97.036	Mastacembelus_armatus
ENSAMXG00000002219	sf3b1	100	95.973	ENSMZEG00005021254	sf3b1	100	95.973	Maylandia_zebra
ENSAMXG00000002219	sf3b1	99	93.492	ENSMGAG00000007017	SF3B1	99	93.492	Meleagris_gallopavo
ENSAMXG00000002219	sf3b1	99	89.748	ENSMAUG00000009071	Sf3b1	99	89.901	Mesocricetus_auratus
ENSAMXG00000002219	sf3b1	100	93.997	ENSMICG00000013879	SF3B1	100	94.149	Microcebus_murinus
ENSAMXG00000002219	sf3b1	99	89.679	ENSMOCG00000000455	Sf3b1	99	89.679	Microtus_ochrogaster
ENSAMXG00000002219	sf3b1	84	96.458	ENSMMOG00000000475	sf3b1	100	96.458	Mola_mola
ENSAMXG00000002219	sf3b1	100	93.541	ENSMODG00000012275	SF3B1	100	93.693	Monodelphis_domestica
ENSAMXG00000002219	sf3b1	100	96.960	ENSMALG00000017211	sf3b1	100	96.960	Monopterus_albus
ENSAMXG00000002219	sf3b1	100	93.997	MGP_CAROLIEiJ_G0014141	Sf3b1	100	94.149	Mus_caroli
ENSAMXG00000002219	sf3b1	100	93.997	ENSMUSG00000025982	Sf3b1	100	94.149	Mus_musculus
ENSAMXG00000002219	sf3b1	100	93.997	MGP_SPRETEiJ_G0014947	Sf3b1	100	94.149	Mus_spretus
ENSAMXG00000002219	sf3b1	100	93.997	ENSMPUG00000007799	SF3B1	100	94.149	Mustela_putorius_furo
ENSAMXG00000002219	sf3b1	100	92.857	ENSMLUG00000000840	SF3B1	100	93.009	Myotis_lucifugus
ENSAMXG00000002219	sf3b1	99	93.674	ENSNGAG00000021884	-	100	93.826	Nannospalax_galili
ENSAMXG00000002219	sf3b1	100	91.572	ENSNBRG00000015816	sf3b1	100	91.572	Neolamprologus_brichardi
ENSAMXG00000002219	sf3b1	100	93.997	ENSNLEG00000006861	SF3B1	100	94.149	Nomascus_leucogenys
ENSAMXG00000002219	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSAMXG00000002219	sf3b1	100	83.511	ENSOPRG00000008596	SF3B1	100	83.511	Ochotona_princeps
ENSAMXG00000002219	sf3b1	100	93.997	ENSODEG00000011153	-	100	94.149	Octodon_degus
ENSAMXG00000002219	sf3b1	100	95.973	ENSONIG00000013758	sf3b1	100	95.973	Oreochromis_niloticus
ENSAMXG00000002219	sf3b1	82	96.494	ENSOCUG00000012722	-	96	96.494	Oryctolagus_cuniculus
ENSAMXG00000002219	sf3b1	100	96.049	ENSORLG00000020219	sf3b1	100	96.049	Oryzias_latipes
ENSAMXG00000002219	sf3b1	100	96.049	ENSORLG00020001746	sf3b1	100	96.049	Oryzias_latipes_hni
ENSAMXG00000002219	sf3b1	64	94.083	ENSORLG00015001759	sf3b1	98	94.083	Oryzias_latipes_hsok
ENSAMXG00000002219	sf3b1	100	96.279	ENSOMEG00000019231	sf3b1	100	96.279	Oryzias_melastigma
ENSAMXG00000002219	sf3b1	100	93.997	ENSOARG00000015374	SF3B1	100	94.149	Ovis_aries
ENSAMXG00000002219	sf3b1	100	93.997	ENSPPAG00000035007	SF3B1	100	94.149	Pan_paniscus
ENSAMXG00000002219	sf3b1	100	93.997	ENSPPRG00000009090	SF3B1	100	94.149	Panthera_pardus
ENSAMXG00000002219	sf3b1	100	93.997	ENSPTIG00000021557	SF3B1	100	94.149	Panthera_tigris_altaica
ENSAMXG00000002219	sf3b1	99	86.412	ENSPTRG00000012771	SF3B1	99	86.565	Pan_troglodytes
ENSAMXG00000002219	sf3b1	100	93.997	ENSPANG00000013417	SF3B1	100	94.149	Papio_anubis
ENSAMXG00000002219	sf3b1	100	97.039	ENSPKIG00000000784	sf3b1	100	97.039	Paramormyrops_kingsleyae
ENSAMXG00000002219	sf3b1	99	92.950	ENSPSIG00000017222	SF3B1	98	92.950	Pelodiscus_sinensis
ENSAMXG00000002219	sf3b1	91	96.479	ENSPMGG00000004330	sf3b1	99	96.479	Periophthalmus_magnuspinnatus
ENSAMXG00000002219	sf3b1	99	93.956	ENSPEMG00000010699	Sf3b1	100	94.109	Peromyscus_maniculatus_bairdii
ENSAMXG00000002219	sf3b1	100	88.679	ENSPMAG00000001311	sf3b1	100	88.830	Petromyzon_marinus
ENSAMXG00000002219	sf3b1	100	93.541	ENSPCIG00000010642	SF3B1	100	93.693	Phascolarctos_cinereus
ENSAMXG00000002219	sf3b1	100	96.813	ENSPFOG00000000073	sf3b1	100	96.813	Poecilia_formosa
ENSAMXG00000002219	sf3b1	100	96.887	ENSPLAG00000002293	sf3b1	100	96.887	Poecilia_latipinna
ENSAMXG00000002219	sf3b1	100	96.887	ENSPMEG00000000446	sf3b1	98	96.887	Poecilia_mexicana
ENSAMXG00000002219	sf3b1	100	97.039	ENSPREG00000019652	sf3b1	100	97.039	Poecilia_reticulata
ENSAMXG00000002219	sf3b1	100	97.415	ENSPPYG00000013044	SF3B1	95	97.415	Pongo_abelii
ENSAMXG00000002219	sf3b1	100	93.845	ENSPCAG00000009292	SF3B1	100	93.997	Procavia_capensis
ENSAMXG00000002219	sf3b1	100	93.997	ENSPCOG00000024074	SF3B1	100	94.149	Propithecus_coquereli
ENSAMXG00000002219	sf3b1	100	93.997	ENSPVAG00000008302	SF3B1	100	94.149	Pteropus_vampyrus
ENSAMXG00000002219	sf3b1	100	95.897	ENSPNYG00000014939	sf3b1	100	95.897	Pundamilia_nyererei
ENSAMXG00000002219	sf3b1	100	98.859	ENSPNAG00000008288	sf3b1	100	98.859	Pygocentrus_nattereri
ENSAMXG00000002219	sf3b1	100	93.997	ENSRNOG00000013516	Sf3b1	100	94.149	Rattus_norvegicus
ENSAMXG00000002219	sf3b1	99	90.259	ENSRBIG00000026096	SF3B1	100	90.411	Rhinopithecus_bieti
ENSAMXG00000002219	sf3b1	100	93.997	ENSRROG00000031308	SF3B1	100	94.149	Rhinopithecus_roxellana
ENSAMXG00000002219	sf3b1	100	93.997	ENSSBOG00000020080	SF3B1	100	94.149	Saimiri_boliviensis_boliviensis
ENSAMXG00000002219	sf3b1	100	93.541	ENSSHAG00000017564	SF3B1	100	93.693	Sarcophilus_harrisii
ENSAMXG00000002219	sf3b1	100	96.809	ENSSFOG00015021535	sf3b1	100	96.809	Scleropages_formosus
ENSAMXG00000002219	sf3b1	99	96.816	ENSSMAG00000013977	sf3b1	99	96.816	Scophthalmus_maximus
ENSAMXG00000002219	sf3b1	100	97.112	ENSSDUG00000017422	sf3b1	100	97.112	Seriola_dumerili
ENSAMXG00000002219	sf3b1	100	97.188	ENSSLDG00000019495	sf3b1	100	97.188	Seriola_lalandi_dorsalis
ENSAMXG00000002219	sf3b1	75	98.592	ENSSARG00000007016	SF3B1	76	98.592	Sorex_araneus
ENSAMXG00000002219	sf3b1	100	93.916	ENSSPUG00000000410	SF3B1	100	93.916	Sphenodon_punctatus
ENSAMXG00000002219	sf3b1	100	96.960	ENSSPAG00000010451	sf3b1	99	96.960	Stegastes_partitus
ENSAMXG00000002219	sf3b1	91	93.672	ENSSSCG00000016075	SF3B1	100	95.377	Sus_scrofa
ENSAMXG00000002219	sf3b1	100	94.068	ENSTGUG00000010553	SF3B1	100	94.068	Taeniopygia_guttata
ENSAMXG00000002219	sf3b1	100	96.960	ENSTRUG00000015534	sf3b1	100	96.960	Takifugu_rubripes
ENSAMXG00000002219	sf3b1	84	97.727	ENSTBEG00000008714	SF3B1	93	97.727	Tupaia_belangeri
ENSAMXG00000002219	sf3b1	92	93.173	ENSTTRG00000003414	SF3B1	92	93.173	Tursiops_truncatus
ENSAMXG00000002219	sf3b1	94	84.715	ENSUAMG00000018506	SF3B1	99	97.571	Ursus_americanus
ENSAMXG00000002219	sf3b1	100	93.997	ENSUMAG00000020945	SF3B1	100	94.149	Ursus_maritimus
ENSAMXG00000002219	sf3b1	95	93.561	ENSVPAG00000005798	SF3B1	96	93.561	Vicugna_pacos
ENSAMXG00000002219	sf3b1	100	93.997	ENSVVUG00000025948	SF3B1	95	94.149	Vulpes_vulpes
ENSAMXG00000002219	sf3b1	100	92.477	ENSXETG00000013339	sf3b1	100	92.477	Xenopus_tropicalis
ENSAMXG00000002219	sf3b1	100	92.027	ENSXCOG00000018086	sf3b1	100	92.711	Xiphophorus_couchianus
ENSAMXG00000002219	sf3b1	100	96.811	ENSXMAG00000007369	sf3b1	100	96.811	Xiphophorus_maculatus