EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000002299 (Gene tree)
Gene ID: 103037998
Gene Symbol: zgc:171482
Alias: -
Full Name: zinc finger matrin-type protein 4
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 62960 bases
Position: chr25:19519793-19582752
Accession: 103037998
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000002348	zf-met	PF12874.7	4.1e-28	1	4
ENSAMXP00000002348	zf-met	PF12874.7	4.1e-28	2	4
ENSAMXP00000002348	zf-met	PF12874.7	4.1e-28	3	4
ENSAMXP00000002348	zf-met	PF12874.7	4.1e-28	4	4
ENSAMXP00000047769	zf-met	PF12874.7	5.9e-15	1	2
ENSAMXP00000047769	zf-met	PF12874.7	5.9e-15	2	2
ENSAMXP00000002348	zf-C2H2_jaz	PF12171.8	5.3e-21	1	2
ENSAMXP00000002348	zf-C2H2_jaz	PF12171.8	5.3e-21	2	2
ENSAMXP00000047769	zf-C2H2_jaz	PF12171.8	1.7e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000039531	-	5107	-	ENSAMXP00000047769	132 (aa)	-	-
ENSAMXT00000002348	-	651	XM_007240385	ENSAMXP00000002348	216 (aa)	XP_007240447	W5K437

Gene Model

Click here to download ENSAMXG00000002299's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000002299's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000002299	zgc:171482	95	46.575	ENSAMXG00000031057	znf346	75	46.226
ENSAMXG00000002299	zgc:171482	100	68.326	ENSAMXG00000035337	zmat4a	100	68.326

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000002299	zgc:171482	100	85.586	ENSAPOG00000019970	zgc:171482	100	85.455	Acanthochromis_polyacanthus
ENSAMXG00000002299	zgc:171482	89	93.162	ENSACIG00000021512	zgc:171482	87	93.162	Amphilophus_citrinellus
ENSAMXG00000002299	zgc:171482	89	93.162	ENSAOCG00000000751	zgc:171482	86	93.162	Amphiprion_ocellaris
ENSAMXG00000002299	zgc:171482	89	93.162	ENSAPEG00000014154	zgc:171482	84	93.162	Amphiprion_percula
ENSAMXG00000002299	zgc:171482	100	83.482	ENSATEG00000001371	zgc:171482	100	83.036	Anabas_testudineus
ENSAMXG00000002299	zgc:171482	89	94.017	ENSACLG00000010511	zgc:171482	81	94.017	Astatotilapia_calliptera
ENSAMXG00000002299	zgc:171482	89	89.744	ENSCSEG00000006509	zgc:171482	100	91.892	Cynoglossus_semilaevis
ENSAMXG00000002299	zgc:171482	100	84.141	ENSCVAG00000013606	zgc:171482	100	83.260	Cyprinodon_variegatus
ENSAMXG00000002299	zgc:171482	99	88.053	ENSDARG00000074415	zgc:171482	99	100.000	Danio_rerio
ENSAMXG00000002299	zgc:171482	92	71.545	ENSELUG00000017517	-	60	87.640	Esox_lucius
ENSAMXG00000002299	zgc:171482	97	87.597	ENSELUG00000021817	zgc:171482	93	87.597	Esox_lucius
ENSAMXG00000002299	zgc:171482	97	86.822	ENSFHEG00000002233	zgc:171482	95	92.793	Fundulus_heteroclitus
ENSAMXG00000002299	zgc:171482	93	90.756	ENSGMOG00000010508	zgc:171482	100	83.333	Gadus_morhua
ENSAMXG00000002299	zgc:171482	100	90.598	ENSGAFG00000009398	zgc:171482	100	93.694	Gambusia_affinis
ENSAMXG00000002299	zgc:171482	93	91.057	ENSGACG00000007680	zgc:171482	100	82.759	Gasterosteus_aculeatus
ENSAMXG00000002299	zgc:171482	89	94.017	ENSHBUG00000023289	zgc:171482	88	94.017	Haplochromis_burtoni
ENSAMXG00000002299	zgc:171482	86	91.304	ENSHCOG00000018086	zgc:171482	86	91.304	Hippocampus_comes
ENSAMXG00000002299	zgc:171482	94	95.161	ENSIPUG00000000361	zgc:171482	90	95.161	Ictalurus_punctatus
ENSAMXG00000002299	zgc:171482	100	83.482	ENSKMAG00000005077	zgc:171482	86	83.182	Kryptolebias_marmoratus
ENSAMXG00000002299	zgc:171482	93	88.618	ENSLBEG00000023823	zgc:171482	86	88.618	Labrus_bergylta
ENSAMXG00000002299	zgc:171482	100	83.260	ENSLOCG00000008863	zgc:171482	97	83.260	Lepisosteus_oculatus
ENSAMXG00000002299	zgc:171482	99	86.885	ENSMAMG00000001031	zgc:171482	92	92.793	Mastacembelus_armatus
ENSAMXG00000002299	zgc:171482	100	85.268	ENSMZEG00005027721	zgc:171482	100	84.821	Maylandia_zebra
ENSAMXG00000002299	zgc:171482	93	91.057	ENSMMOG00000010523	zgc:171482	97	93.694	Mola_mola
ENSAMXG00000002299	zgc:171482	100	83.843	ENSMALG00000017883	zgc:171482	100	82.969	Monopterus_albus
ENSAMXG00000002299	zgc:171482	99	83.969	ENSNBRG00000021035	zgc:171482	98	83.969	Neolamprologus_brichardi
ENSAMXG00000002299	zgc:171482	99	86.784	ENSONIG00000018365	zgc:171482	98	84.956	Oreochromis_niloticus
ENSAMXG00000002299	zgc:171482	100	84.141	ENSORLG00000007607	zgc:171482	100	84.141	Oryzias_latipes
ENSAMXG00000002299	zgc:171482	100	85.778	ENSORLG00020003563	zgc:171482	100	84.889	Oryzias_latipes_hni
ENSAMXG00000002299	zgc:171482	100	84.141	ENSORLG00015008552	zgc:171482	100	84.141	Oryzias_latipes_hsok
ENSAMXG00000002299	zgc:171482	98	86.923	ENSOMEG00000003526	zgc:171482	92	86.923	Oryzias_melastigma
ENSAMXG00000002299	zgc:171482	83	90.000	ENSPKIG00000016244	zgc:171482	91	81.102	Paramormyrops_kingsleyae
ENSAMXG00000002299	zgc:171482	91	93.333	ENSPKIG00000015911	-	83	93.333	Paramormyrops_kingsleyae
ENSAMXG00000002299	zgc:171482	93	88.710	ENSPMGG00000020230	zgc:171482	100	78.661	Periophthalmus_magnuspinnatus
ENSAMXG00000002299	zgc:171482	99	82.427	ENSPFOG00000001974	zgc:171482	96	79.916	Poecilia_formosa
ENSAMXG00000002299	zgc:171482	100	85.778	ENSPLAG00000003327	zgc:171482	100	86.425	Poecilia_latipinna
ENSAMXG00000002299	zgc:171482	99	87.903	ENSPMEG00000004988	zgc:171482	100	84.862	Poecilia_mexicana
ENSAMXG00000002299	zgc:171482	95	87.692	ENSPREG00000019241	zgc:171482	94	87.692	Poecilia_reticulata
ENSAMXG00000002299	zgc:171482	89	94.017	ENSPNYG00000007773	zgc:171482	81	94.017	Pundamilia_nyererei
ENSAMXG00000002299	zgc:171482	92	96.721	ENSPNAG00000007619	zgc:171482	97	88.646	Pygocentrus_nattereri
ENSAMXG00000002299	zgc:171482	92	90.083	ENSSFOG00015021238	zgc:171482	80	90.756	Scleropages_formosus
ENSAMXG00000002299	zgc:171482	91	86.667	ENSSFOG00015016149	zgc:171482	96	86.667	Scleropages_formosus
ENSAMXG00000002299	zgc:171482	91	90.000	ENSSMAG00000002715	zgc:171482	77	90.000	Scophthalmus_maximus
ENSAMXG00000002299	zgc:171482	93	90.244	ENSSDUG00000008773	zgc:171482	85	90.244	Seriola_dumerili
ENSAMXG00000002299	zgc:171482	93	90.244	ENSSLDG00000019510	zgc:171482	85	90.244	Seriola_lalandi_dorsalis
ENSAMXG00000002299	zgc:171482	89	93.162	ENSSPAG00000013724	zgc:171482	93	93.162	Stegastes_partitus
ENSAMXG00000002299	zgc:171482	92	88.525	ENSTRUG00000005705	zgc:171482	73	88.525	Takifugu_rubripes
ENSAMXG00000002299	zgc:171482	100	74.009	ENSTNIG00000008679	zgc:171482	100	71.806	Tetraodon_nigroviridis
ENSAMXG00000002299	zgc:171482	79	79.245	ENSXETG00000013525	zmat4	76	79.245	Xenopus_tropicalis
ENSAMXG00000002299	zgc:171482	100	86.842	ENSXMAG00000002641	zgc:171482	100	89.815	Xiphophorus_maculatus