EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000002608 (Gene tree)
Gene ID: 103044612
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 19022 bases
Position: chr19:31964018-31983039
Accession: 103044612
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000027538	Smg4_UPF3	PF03467.15	1.1e-53	1	1
ENSAMXP00000036221	Smg4_UPF3	PF03467.15	1.3e-53	1	1
ENSAMXP00000002675	Smg4_UPF3	PF03467.15	1.3e-53	1	1
ENSAMXP00000002676	Smg4_UPF3	PF03467.15	9.3e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000002675	-	3341	XM_007227868	ENSAMXP00000002675	481 (aa)	XP_007227930	W5K514
ENSAMXT00000002676	-	1326	-	ENSAMXP00000002676	441 (aa)	-	W5K515
ENSAMXT00000032101	-	3869	-	ENSAMXP00000036221	478 (aa)	-	-
ENSAMXT00000031115	-	3263	XM_007227869	ENSAMXP00000027538	455 (aa)	XP_007227931	UPI000BBDFFF1

Gene Model

Click here to download ENSAMXG00000002608's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03013	RNA transport	KEGG
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000002608's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000002608	upf3a	99	54.025	ENSG00000169062	UPF3A	96	54.661	Homo_sapiens
ENSAMXG00000002608	upf3a	99	83.444	ENSAPOG00000013484	upf3a	98	83.628	Acanthochromis_polyacanthus
ENSAMXG00000002608	upf3a	89	51.954	ENSAPOG00000012775	upf3b	93	47.674	Acanthochromis_polyacanthus
ENSAMXG00000002608	upf3a	85	61.042	ENSAMEG00000004259	UPF3A	88	61.042	Ailuropoda_melanoleuca
ENSAMXG00000002608	upf3a	99	78.992	ENSACIG00000020468	upf3a	99	79.158	Amphilophus_citrinellus
ENSAMXG00000002608	upf3a	65	59.935	ENSAOCG00000000706	upf3b	93	53.349	Amphiprion_ocellaris
ENSAMXG00000002608	upf3a	99	84.176	ENSAOCG00000020784	upf3a	98	84.361	Amphiprion_ocellaris
ENSAMXG00000002608	upf3a	99	84.176	ENSAPEG00000003519	upf3a	98	84.361	Amphiprion_percula
ENSAMXG00000002608	upf3a	53	67.200	ENSAPEG00000005545	upf3b	93	46.744	Amphiprion_percula
ENSAMXG00000002608	upf3a	89	49.433	ENSATEG00000018742	upf3b	91	45.622	Anabas_testudineus
ENSAMXG00000002608	upf3a	99	82.857	ENSATEG00000005843	upf3a	99	82.251	Anabas_testudineus
ENSAMXG00000002608	upf3a	89	67.064	ENSACAG00000001540	UPF3A	100	67.064	Anolis_carolinensis
ENSAMXG00000002608	upf3a	86	47.356	ENSANAG00000025598	-	64	64.865	Aotus_nancymaae
ENSAMXG00000002608	upf3a	85	51.816	ENSANAG00000021894	-	79	70.000	Aotus_nancymaae
ENSAMXG00000002608	upf3a	99	52.092	ENSANAG00000021713	UPF3A	93	53.648	Aotus_nancymaae
ENSAMXG00000002608	upf3a	99	80.127	ENSACLG00000026274	upf3a	98	80.297	Astatotilapia_calliptera
ENSAMXG00000002608	upf3a	85	51.816	ENSCJAG00000004975	UPF3B	79	69.412	Callithrix_jacchus
ENSAMXG00000002608	upf3a	97	53.004	ENSCJAG00000019102	UPF3A	99	52.469	Callithrix_jacchus
ENSAMXG00000002608	upf3a	94	55.315	ENSCAFG00000006504	UPF3A	99	55.098	Canis_familiaris
ENSAMXG00000002608	upf3a	84	51.117	ENSCAFG00020004074	UPF3B	65	70.513	Canis_lupus_dingo
ENSAMXG00000002608	upf3a	94	55.315	ENSCAFG00020014268	UPF3A	96	55.098	Canis_lupus_dingo
ENSAMXG00000002608	upf3a	89	55.238	ENSCHIG00000008682	UPF3A	84	54.630	Capra_hircus
ENSAMXG00000002608	upf3a	75	53.562	ENSTSYG00000001918	UPF3A	95	54.972	Carlito_syrichta
ENSAMXG00000002608	upf3a	74	59.770	ENSCPOG00000006824	UPF3A	81	59.770	Cavia_porcellus
ENSAMXG00000002608	upf3a	82	40.519	ENSCCAG00000029813	-	57	58.235	Cebus_capucinus
ENSAMXG00000002608	upf3a	99	52.784	ENSCCAG00000018406	UPF3A	99	54.622	Cebus_capucinus
ENSAMXG00000002608	upf3a	99	54.321	ENSCATG00000029733	UPF3A	99	54.938	Cercocebus_atys
ENSAMXG00000002608	upf3a	99	54.601	ENSCSAG00000017388	UPF3A	99	55.215	Chlorocebus_sabaeus
ENSAMXG00000002608	upf3a	82	60.267	ENSCGRG00001017387	Upf3a	88	60.267	Cricetulus_griseus_chok1gshd
ENSAMXG00000002608	upf3a	82	60.267	ENSCGRG00000001468	Upf3a	88	60.267	Cricetulus_griseus_crigri
ENSAMXG00000002608	upf3a	100	79.956	ENSCSEG00000005106	upf3a	99	79.956	Cynoglossus_semilaevis
ENSAMXG00000002608	upf3a	82	54.115	ENSCSEG00000002046	upf3b	84	47.561	Cynoglossus_semilaevis
ENSAMXG00000002608	upf3a	99	79.825	ENSCVAG00000022333	upf3a	98	80.000	Cyprinodon_variegatus
ENSAMXG00000002608	upf3a	83	43.921	ENSCVAG00000005030	upf3b	89	45.232	Cyprinodon_variegatus
ENSAMXG00000002608	upf3a	100	86.722	ENSDARG00000069297	upf3a	100	86.722	Danio_rerio
ENSAMXG00000002608	upf3a	85	60.922	ENSDNOG00000034391	UPF3A	93	60.922	Dasypus_novemcinctus
ENSAMXG00000002608	upf3a	92	55.300	ENSETEG00000010110	UPF3A	96	52.211	Echinops_telfairi
ENSAMXG00000002608	upf3a	84	51.629	ENSEASG00005012919	UPF3B	72	67.568	Equus_asinus_asinus
ENSAMXG00000002608	upf3a	92	57.534	ENSEASG00005021884	UPF3A	91	57.078	Equus_asinus_asinus
ENSAMXG00000002608	upf3a	91	58.701	ENSECAG00000017141	UPF3A	91	58.581	Equus_caballus
ENSAMXG00000002608	upf3a	84	51.629	ENSECAG00000016947	UPF3B	75	59.756	Equus_caballus
ENSAMXG00000002608	upf3a	100	80.645	ENSELUG00000011050	upf3a	100	80.645	Esox_lucius
ENSAMXG00000002608	upf3a	50	68.644	ENSELUG00000020389	upf3b	61	69.565	Esox_lucius
ENSAMXG00000002608	upf3a	91	58.124	ENSFCAG00000014602	UPF3A	92	58.145	Felis_catus
ENSAMXG00000002608	upf3a	84	52.927	ENSFDAG00000018869	UPF3B	89	44.651	Fukomys_damarensis
ENSAMXG00000002608	upf3a	100	79.698	ENSGAFG00000021170	upf3a	99	79.698	Gambusia_affinis
ENSAMXG00000002608	upf3a	81	47.475	ENSGACG00000017435	upf3b	60	71.341	Gasterosteus_aculeatus
ENSAMXG00000002608	upf3a	70	79.688	ENSGACG00000001972	upf3a	100	76.301	Gasterosteus_aculeatus
ENSAMXG00000002608	upf3a	89	46.793	ENSGGOG00000043074	-	86	47.304	Gorilla_gorilla
ENSAMXG00000002608	upf3a	99	53.040	ENSGGOG00000015428	UPF3A	99	53.292	Gorilla_gorilla
ENSAMXG00000002608	upf3a	98	43.573	ENSGGOG00000041219	-	96	42.484	Gorilla_gorilla
ENSAMXG00000002608	upf3a	83	44.581	ENSHBUG00000017393	upf3b	96	43.237	Haplochromis_burtoni
ENSAMXG00000002608	upf3a	99	83.297	ENSHBUG00000011325	upf3a	98	83.480	Haplochromis_burtoni
ENSAMXG00000002608	upf3a	77	56.077	ENSHGLG00000001544	UPF3A	86	56.630	Heterocephalus_glaber_female
ENSAMXG00000002608	upf3a	77	56.077	ENSHGLG00100013244	UPF3A	86	56.630	Heterocephalus_glaber_male
ENSAMXG00000002608	upf3a	95	74.091	ENSHCOG00000013985	upf3a	94	74.091	Hippocampus_comes
ENSAMXG00000002608	upf3a	88	53.052	ENSHCOG00000017004	upf3b	96	46.667	Hippocampus_comes
ENSAMXG00000002608	upf3a	100	89.419	ENSIPUG00000023450	upf3a	100	89.419	Ictalurus_punctatus
ENSAMXG00000002608	upf3a	85	51.574	ENSSTOG00000001101	UPF3B	85	46.814	Ictidomys_tridecemlineatus
ENSAMXG00000002608	upf3a	56	62.547	ENSKMAG00000020300	upf3b	96	47.124	Kryptolebias_marmoratus
ENSAMXG00000002608	upf3a	100	80.994	ENSKMAG00000004381	upf3a	99	80.994	Kryptolebias_marmoratus
ENSAMXG00000002608	upf3a	100	77.293	ENSLBEG00000021570	upf3a	100	76.638	Labrus_bergylta
ENSAMXG00000002608	upf3a	66	46.467	ENSLACG00000006645	UPF3A	74	89.286	Latimeria_chalumnae
ENSAMXG00000002608	upf3a	99	77.155	ENSLOCG00000002665	upf3a	100	77.155	Lepisosteus_oculatus
ENSAMXG00000002608	upf3a	83	50.739	ENSLAFG00000023358	UPF3A	95	49.261	Loxodonta_africana
ENSAMXG00000002608	upf3a	93	54.923	ENSMFAG00000045016	UPF3A	96	54.267	Macaca_fascicularis
ENSAMXG00000002608	upf3a	91	56.818	ENSMMUG00000007449	UPF3A	99	54.393	Macaca_mulatta
ENSAMXG00000002608	upf3a	89	58.373	ENSMNEG00000036402	UPF3A	83	58.373	Macaca_nemestrina
ENSAMXG00000002608	upf3a	83	60.256	ENSMLEG00000014726	UPF3A	93	57.895	Mandrillus_leucophaeus
ENSAMXG00000002608	upf3a	100	78.033	ENSMAMG00000018364	upf3a	99	78.033	Mastacembelus_armatus
ENSAMXG00000002608	upf3a	99	80.127	ENSMZEG00005021571	upf3a	98	80.297	Maylandia_zebra
ENSAMXG00000002608	upf3a	85	67.246	ENSMGAG00000014837	UPF3A	99	67.079	Meleagris_gallopavo
ENSAMXG00000002608	upf3a	58	69.925	ENSMOCG00000000550	Upf3a	50	73.034	Microtus_ochrogaster
ENSAMXG00000002608	upf3a	99	78.981	ENSMMOG00000019751	upf3a	98	78.981	Mola_mola
ENSAMXG00000002608	upf3a	83	47.160	ENSMODG00000010232	UPF3B	93	46.402	Monodelphis_domestica
ENSAMXG00000002608	upf3a	90	66.822	ENSMODG00000003159	UPF3A	99	67.765	Monodelphis_domestica
ENSAMXG00000002608	upf3a	51	57.203	ENSMALG00000008042	upf3b	96	42.605	Monopterus_albus
ENSAMXG00000002608	upf3a	82	59.416	MGP_CAROLIEiJ_G0030848	Upf3a	88	59.416	Mus_caroli
ENSAMXG00000002608	upf3a	82	59.416	ENSMUSG00000038398	Upf3a	88	59.416	Mus_musculus
ENSAMXG00000002608	upf3a	84	52.415	MGP_PahariEiJ_G0031543	Upf3b	84	46.535	Mus_pahari
ENSAMXG00000002608	upf3a	82	60.477	MGP_PahariEiJ_G0021311	Upf3a	88	60.477	Mus_pahari
ENSAMXG00000002608	upf3a	82	59.151	MGP_SPRETEiJ_G0031958	Upf3a	88	59.151	Mus_spretus
ENSAMXG00000002608	upf3a	94	55.411	ENSMPUG00000009139	UPF3A	95	55.411	Mustela_putorius_furo
ENSAMXG00000002608	upf3a	83	61.772	ENSMLUG00000015905	UPF3A	93	61.772	Myotis_lucifugus
ENSAMXG00000002608	upf3a	86	56.858	ENSNGAG00000019314	Upf3a	95	56.858	Nannospalax_galili
ENSAMXG00000002608	upf3a	99	83.077	ENSNBRG00000000828	upf3a	98	83.260	Neolamprologus_brichardi
ENSAMXG00000002608	upf3a	99	53.556	ENSNLEG00000007563	UPF3A	99	53.799	Nomascus_leucogenys
ENSAMXG00000002608	upf3a	99	82.314	ENSONIG00000006817	upf3a	98	82.495	Oreochromis_niloticus
ENSAMXG00000002608	upf3a	78	59.128	ENSOANG00000006985	-	96	58.919	Ornithorhynchus_anatinus
ENSAMXG00000002608	upf3a	100	77.253	ENSORLG00000010911	upf3a	99	77.253	Oryzias_latipes
ENSAMXG00000002608	upf3a	100	77.489	ENSORLG00020014317	upf3a	99	77.489	Oryzias_latipes_hni
ENSAMXG00000002608	upf3a	83	43.032	ENSORLG00020003758	upf3b	57	62.644	Oryzias_latipes_hni
ENSAMXG00000002608	upf3a	100	77.922	ENSORLG00015017339	upf3a	58	77.922	Oryzias_latipes_hsok
ENSAMXG00000002608	upf3a	100	78.788	ENSOMEG00000014425	upf3a	99	78.788	Oryzias_melastigma
ENSAMXG00000002608	upf3a	73	63.006	ENSOGAG00000004788	UPF3A	83	63.006	Otolemur_garnettii
ENSAMXG00000002608	upf3a	85	57.908	ENSOARG00000009004	UPF3A	85	57.869	Ovis_aries
ENSAMXG00000002608	upf3a	99	54.123	ENSPPAG00000042267	UPF3A	96	54.237	Pan_paniscus
ENSAMXG00000002608	upf3a	91	57.895	ENSPPRG00000025062	UPF3A	92	57.919	Panthera_pardus
ENSAMXG00000002608	upf3a	89	47.188	ENSPTRG00000041187	-	90	43.780	Pan_troglodytes
ENSAMXG00000002608	upf3a	99	54.123	ENSPTRG00000006073	UPF3A	99	52.490	Pan_troglodytes
ENSAMXG00000002608	upf3a	95	42.152	ENSPTRG00000051640	-	91	42.344	Pan_troglodytes
ENSAMXG00000002608	upf3a	89	46.455	ENSPTRG00000041835	-	91	45.098	Pan_troglodytes
ENSAMXG00000002608	upf3a	92	57.616	ENSPANG00000004346	UPF3A	95	57.616	Papio_anubis
ENSAMXG00000002608	upf3a	100	76.434	ENSPKIG00000004422	upf3a	100	76.434	Paramormyrops_kingsleyae
ENSAMXG00000002608	upf3a	90	49.889	ENSPKIG00000019226	upf3b	86	68.794	Paramormyrops_kingsleyae
ENSAMXG00000002608	upf3a	89	67.381	ENSPSIG00000007468	UPF3A	99	67.381	Pelodiscus_sinensis
ENSAMXG00000002608	upf3a	99	76.681	ENSPMGG00000012696	upf3a	98	76.681	Periophthalmus_magnuspinnatus
ENSAMXG00000002608	upf3a	82	60.267	ENSPEMG00000019968	-	88	60.267	Peromyscus_maniculatus_bairdii
ENSAMXG00000002608	upf3a	84	49.380	ENSPCIG00000028914	UPF3B	86	48.551	Phascolarctos_cinereus
ENSAMXG00000002608	upf3a	90	63.004	ENSPCIG00000019590	-	88	73.333	Phascolarctos_cinereus
ENSAMXG00000002608	upf3a	100	80.303	ENSPFOG00000013222	upf3a	99	80.303	Poecilia_formosa
ENSAMXG00000002608	upf3a	99	79.386	ENSPLAG00000011960	upf3a	99	79.386	Poecilia_latipinna
ENSAMXG00000002608	upf3a	100	76.971	ENSPMEG00000000836	upf3a	99	76.971	Poecilia_mexicana
ENSAMXG00000002608	upf3a	93	54.466	ENSPPYG00000005536	UPF3A	96	55.120	Pongo_abelii
ENSAMXG00000002608	upf3a	85	52.174	ENSPCOG00000021960	UPF3B	85	47.030	Propithecus_coquereli
ENSAMXG00000002608	upf3a	93	53.579	ENSPVAG00000005656	UPF3A	96	54.447	Pteropus_vampyrus
ENSAMXG00000002608	upf3a	99	80.127	ENSPNYG00000011289	upf3a	98	80.297	Pundamilia_nyererei
ENSAMXG00000002608	upf3a	100	94.387	ENSPNAG00000019532	upf3a	100	94.387	Pygocentrus_nattereri
ENSAMXG00000002608	upf3a	87	51.049	ENSPNAG00000021528	upf3b	58	72.414	Pygocentrus_nattereri
ENSAMXG00000002608	upf3a	73	62.575	ENSRNOG00000017397	Upf3a	82	62.575	Rattus_norvegicus
ENSAMXG00000002608	upf3a	91	57.619	ENSRBIG00000034007	UPF3A	92	57.619	Rhinopithecus_bieti
ENSAMXG00000002608	upf3a	89	58.824	ENSRROG00000012212	UPF3A	84	58.824	Rhinopithecus_roxellana
ENSAMXG00000002608	upf3a	85	51.807	ENSSBOG00000019740	UPF3B	80	70.833	Saimiri_boliviensis_boliviensis
ENSAMXG00000002608	upf3a	81	54.593	ENSSBOG00000029989	UPF3A	95	48.941	Saimiri_boliviensis_boliviensis
ENSAMXG00000002608	upf3a	87	68.382	ENSSHAG00000009895	UPF3A	96	69.118	Sarcophilus_harrisii
ENSAMXG00000002608	upf3a	100	71.930	ENSSFOG00015021851	upf3a	100	70.614	Scleropages_formosus
ENSAMXG00000002608	upf3a	100	75.918	ENSSMAG00000003858	upf3a	99	75.918	Scophthalmus_maximus
ENSAMXG00000002608	upf3a	88	49.885	ENSSMAG00000012913	upf3b	91	45.035	Scophthalmus_maximus
ENSAMXG00000002608	upf3a	99	80.892	ENSSDUG00000009680	upf3a	98	81.064	Seriola_dumerili
ENSAMXG00000002608	upf3a	99	83.736	ENSSLDG00000009700	upf3a	98	83.921	Seriola_lalandi_dorsalis
ENSAMXG00000002608	upf3a	80	50.263	ENSSARG00000007262	UPF3A	92	48.947	Sorex_araneus
ENSAMXG00000002608	upf3a	100	82.251	ENSSPAG00000007938	upf3a	99	79.167	Stegastes_partitus
ENSAMXG00000002608	upf3a	51	69.672	ENSSPAG00000009989	upf3b	93	45.561	Stegastes_partitus
ENSAMXG00000002608	upf3a	83	60.000	ENSSSCG00000024679	UPF3A	79	59.596	Sus_scrofa
ENSAMXG00000002608	upf3a	84	70.127	ENSTGUG00000009493	UPF3A	99	70.633	Taeniopygia_guttata
ENSAMXG00000002608	upf3a	99	79.341	ENSTRUG00000012730	upf3a	99	79.341	Takifugu_rubripes
ENSAMXG00000002608	upf3a	85	73.096	ENSTNIG00000014973	upf3a	100	72.589	Tetraodon_nigroviridis
ENSAMXG00000002608	upf3a	75	56.215	ENSTTRG00000015414	UPF3A	74	56.215	Tursiops_truncatus
ENSAMXG00000002608	upf3a	84	50.365	ENSUAMG00000024565	UPF3B	68	66.216	Ursus_americanus
ENSAMXG00000002608	upf3a	83	58.462	ENSVPAG00000003525	UPF3A	95	58.718	Vicugna_pacos
ENSAMXG00000002608	upf3a	84	51.117	ENSVVUG00000011594	UPF3B	79	70.000	Vulpes_vulpes
ENSAMXG00000002608	upf3a	91	56.808	ENSVVUG00000013538	UPF3A	89	53.215	Vulpes_vulpes
ENSAMXG00000002608	upf3a	84	48.395	ENSXETG00000007440	upf3b	77	71.348	Xenopus_tropicalis
ENSAMXG00000002608	upf3a	91	57.343	ENSXETG00000002572	upf3a	100	57.343	Xenopus_tropicalis
ENSAMXG00000002608	upf3a	100	79.914	ENSXMAG00000013452	upf3a	99	79.914	Xiphophorus_maculatus