EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000002728 (Gene tree)
Gene ID: 103032507
Gene Symbol: si:dkey-37o8.1
Alias: fi12b10|wu:fi12b10
Full Name: elongation factor 1-alpha-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 3424 bases
Position: chrAPWO02000031.1:171974-175397
Accession: 103032507
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000002796	GTP_EFTU	PF00009.27	2.8e-53	1	1
ENSAMXP00000002796	GTP_EFTU_D2	PF03144.25	6.2e-11	1	1
ENSAMXP00000002796	GTP_EFTU_D3	PF03143.17	1.3e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000002796	-	1377	XM_007258592	ENSAMXP00000002796	458 (aa)	XP_007258654	W5K5D5

Gene Model

Click here to download ENSAMXG00000002728's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000002728's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000002728	si:dkey-37o8.1	94	37.413	ENSAMXG00000002781	gspt1l	63	37.413
ENSAMXG00000002728	si:dkey-37o8.1	99	72.767	ENSAMXG00000020651	eef1a1b	99	72.767
ENSAMXG00000002728	si:dkey-37o8.1	100	72.078	ENSAMXG00000029743	-	100	72.078
ENSAMXG00000002728	si:dkey-37o8.1	100	72.078	ENSAMXG00000004487	EEF1A1	100	72.078
ENSAMXG00000002728	si:dkey-37o8.1	95	40.092	ENSAMXG00000004260	hbs1l	73	39.726
ENSAMXG00000002728	si:dkey-37o8.1	99	72.985	ENSAMXG00000002854	eef1a2	99	72.985
ENSAMXG00000002728	si:dkey-37o8.1	94	37.644	ENSAMXG00000008638	gspt1	76	36.952

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000002728	si:dkey-37o8.1	100	84.498	ENSAPOG00000016459	si:dkey-37o8.1	100	84.498	Acanthochromis_polyacanthus
ENSAMXG00000002728	si:dkey-37o8.1	95	81.922	ENSACIG00000020985	si:dkey-37o8.1	82	81.922	Amphilophus_citrinellus
ENSAMXG00000002728	si:dkey-37o8.1	100	86.463	ENSAOCG00000002663	si:dkey-37o8.1	100	86.463	Amphiprion_ocellaris
ENSAMXG00000002728	si:dkey-37o8.1	100	86.463	ENSAPEG00000012670	si:dkey-37o8.1	100	86.463	Amphiprion_percula
ENSAMXG00000002728	si:dkey-37o8.1	92	85.308	ENSATEG00000002217	si:dkey-37o8.1	99	85.308	Anabas_testudineus
ENSAMXG00000002728	si:dkey-37o8.1	100	84.498	ENSACLG00000003519	si:dkey-37o8.1	100	84.498	Astatotilapia_calliptera
ENSAMXG00000002728	si:dkey-37o8.1	99	73.085	ENSCPBG00000020570	-	90	73.246	Chrysemys_picta_bellii
ENSAMXG00000002728	si:dkey-37o8.1	100	78.913	ENSCSEG00000019807	si:dkey-37o8.1	100	78.065	Cynoglossus_semilaevis
ENSAMXG00000002728	si:dkey-37o8.1	99	84.615	ENSCVAG00000009828	si:dkey-37o8.1	99	84.615	Cyprinodon_variegatus
ENSAMXG00000002728	si:dkey-37o8.1	100	87.555	ENSDARG00000071727	si:dkey-37o8.1	95	87.555	Danio_rerio
ENSAMXG00000002728	si:dkey-37o8.1	100	86.245	ENSELUG00000007495	si:dkey-37o8.1	100	86.245	Esox_lucius
ENSAMXG00000002728	si:dkey-37o8.1	100	84.279	ENSFHEG00000017452	si:dkey-37o8.1	100	84.279	Fundulus_heteroclitus
ENSAMXG00000002728	si:dkey-37o8.1	99	77.802	ENSGMOG00000006122	si:dkey-37o8.1	100	77.802	Gadus_morhua
ENSAMXG00000002728	si:dkey-37o8.1	98	78.889	ENSGAFG00000000367	si:dkey-37o8.1	99	78.889	Gambusia_affinis
ENSAMXG00000002728	si:dkey-37o8.1	100	81.223	ENSGACG00000004505	si:dkey-37o8.1	100	81.223	Gasterosteus_aculeatus
ENSAMXG00000002728	si:dkey-37o8.1	99	74.781	ENSGAGG00000007724	-	97	79.808	Gopherus_agassizii
ENSAMXG00000002728	si:dkey-37o8.1	100	84.716	ENSHBUG00000015515	si:dkey-37o8.1	100	84.716	Haplochromis_burtoni
ENSAMXG00000002728	si:dkey-37o8.1	97	76.975	ENSHCOG00000001215	si:dkey-37o8.1	98	76.975	Hippocampus_comes
ENSAMXG00000002728	si:dkey-37o8.1	100	93.013	ENSIPUG00000004067	si:dkey-37o8.1	100	93.013	Ictalurus_punctatus
ENSAMXG00000002728	si:dkey-37o8.1	100	82.969	ENSKMAG00000015910	si:dkey-37o8.1	100	82.969	Kryptolebias_marmoratus
ENSAMXG00000002728	si:dkey-37o8.1	100	84.934	ENSLBEG00000021334	si:dkey-37o8.1	90	84.934	Labrus_bergylta
ENSAMXG00000002728	si:dkey-37o8.1	99	78.681	ENSLACG00000003948	si:dkey-37o8.1	99	78.681	Latimeria_chalumnae
ENSAMXG00000002728	si:dkey-37o8.1	100	86.492	ENSLOCG00000011245	si:dkey-37o8.1	100	86.492	Lepisosteus_oculatus
ENSAMXG00000002728	si:dkey-37o8.1	97	73.589	ENSMAMG00000009907	si:dkey-37o8.1	93	73.589	Mastacembelus_armatus
ENSAMXG00000002728	si:dkey-37o8.1	100	84.498	ENSMZEG00005018358	si:dkey-37o8.1	100	84.498	Maylandia_zebra
ENSAMXG00000002728	si:dkey-37o8.1	98	84.410	ENSMMOG00000004111	si:dkey-37o8.1	98	84.410	Mola_mola
ENSAMXG00000002728	si:dkey-37o8.1	95	79.224	ENSMALG00000017152	si:dkey-37o8.1	99	79.224	Monopterus_albus
ENSAMXG00000002728	si:dkey-37o8.1	100	84.279	ENSNBRG00000013552	si:dkey-37o8.1	100	84.279	Neolamprologus_brichardi
ENSAMXG00000002728	si:dkey-37o8.1	100	83.843	ENSONIG00000006165	si:dkey-37o8.1	100	83.843	Oreochromis_niloticus
ENSAMXG00000002728	si:dkey-37o8.1	100	85.153	ENSORLG00000019066	si:dkey-37o8.1	100	85.153	Oryzias_latipes
ENSAMXG00000002728	si:dkey-37o8.1	100	85.153	ENSORLG00020008094	si:dkey-37o8.1	100	85.153	Oryzias_latipes_hni
ENSAMXG00000002728	si:dkey-37o8.1	100	85.153	ENSORLG00015008410	si:dkey-37o8.1	100	85.153	Oryzias_latipes_hsok
ENSAMXG00000002728	si:dkey-37o8.1	100	85.590	ENSOMEG00000001868	si:dkey-37o8.1	100	85.590	Oryzias_melastigma
ENSAMXG00000002728	si:dkey-37o8.1	100	86.275	ENSPKIG00000017246	si:dkey-37o8.1	100	86.275	Paramormyrops_kingsleyae
ENSAMXG00000002728	si:dkey-37o8.1	60	67.845	ENSPSIG00000008080	-	99	67.845	Pelodiscus_sinensis
ENSAMXG00000002728	si:dkey-37o8.1	100	84.279	ENSPFOG00000013173	si:dkey-37o8.1	100	84.279	Poecilia_formosa
ENSAMXG00000002728	si:dkey-37o8.1	97	84.163	ENSPLAG00000010405	si:dkey-37o8.1	100	83.188	Poecilia_latipinna
ENSAMXG00000002728	si:dkey-37o8.1	100	84.279	ENSPMEG00000015233	si:dkey-37o8.1	100	84.279	Poecilia_mexicana
ENSAMXG00000002728	si:dkey-37o8.1	99	83.956	ENSPREG00000006280	si:dkey-37o8.1	100	83.956	Poecilia_reticulata
ENSAMXG00000002728	si:dkey-37o8.1	100	83.843	ENSPNYG00000002059	si:dkey-37o8.1	100	83.843	Pundamilia_nyererei
ENSAMXG00000002728	si:dkey-37o8.1	100	94.105	ENSPNAG00000009990	si:dkey-37o8.1	100	94.105	Pygocentrus_nattereri
ENSAMXG00000002728	si:dkey-37o8.1	97	86.996	ENSSFOG00015019070	si:dkey-37o8.1	98	86.996	Scleropages_formosus
ENSAMXG00000002728	si:dkey-37o8.1	100	85.153	ENSSMAG00000016143	si:dkey-37o8.1	100	85.153	Scophthalmus_maximus
ENSAMXG00000002728	si:dkey-37o8.1	100	85.371	ENSSDUG00000009163	si:dkey-37o8.1	100	85.371	Seriola_dumerili
ENSAMXG00000002728	si:dkey-37o8.1	100	85.590	ENSSLDG00000023761	si:dkey-37o8.1	100	85.590	Seriola_lalandi_dorsalis
ENSAMXG00000002728	si:dkey-37o8.1	99	72.210	ENSSPUG00000007467	-	99	72.210	Sphenodon_punctatus
ENSAMXG00000002728	si:dkey-37o8.1	100	86.463	ENSSPAG00000013856	si:dkey-37o8.1	100	86.463	Stegastes_partitus
ENSAMXG00000002728	si:dkey-37o8.1	99	84.396	ENSTRUG00000009006	si:dkey-37o8.1	100	84.396	Takifugu_rubripes
ENSAMXG00000002728	si:dkey-37o8.1	99	83.151	ENSTNIG00000017138	si:dkey-37o8.1	98	83.151	Tetraodon_nigroviridis
ENSAMXG00000002728	si:dkey-37o8.1	96	78.360	ENSXETG00000017744	42Sp50	95	78.360	Xenopus_tropicalis
ENSAMXG00000002728	si:dkey-37o8.1	99	83.736	ENSXCOG00000012296	si:dkey-37o8.1	100	84.615	Xiphophorus_couchianus
ENSAMXG00000002728	si:dkey-37o8.1	100	84.279	ENSXMAG00000001998	si:dkey-37o8.1	100	84.279	Xiphophorus_maculatus