EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000002865 (Gene tree)
Gene ID: 103039540
Gene Symbol: lsm14b
Alias: zRAP55|zgc:55673
Full Name: LSM family member 14B
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 11947 bases
Position: chrAPWO02000056.1:557389-569335
Accession: 103039540
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000002934	FDF	PF09532.10	3.3e-16	1	1
ENSAMXP00000002934	SM-ATX	PF14438.6	1.1e-08	1	1
ENSAMXP00000002934	LSM14	PF12701.7	8.3e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000002934	-	2370	XM_007236081	ENSAMXP00000002934	394 (aa)	XP_007236143	W5K5S3

Gene Model

Click here to download ENSAMXG00000002865's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000002865's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000002865	lsm14b	92	45.521	ENSAMXG00000032221	lsm14ab	84	46.747
ENSAMXG00000002865	lsm14b	91	48.021	ENSAMXG00000017690	lsm14aa	83	48.942

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000002865	lsm14b	99	61.905	ENSG00000149657	LSM14B	99	61.179	Homo_sapiens
ENSAMXG00000002865	lsm14b	90	62.185	ENSAPOG00000001780	lsm14b	90	61.064	Acanthochromis_polyacanthus
ENSAMXG00000002865	lsm14b	99	55.556	ENSAMEG00000013430	LSM14B	91	55.087	Ailuropoda_melanoleuca
ENSAMXG00000002865	lsm14b	91	57.382	ENSACIG00000012266	lsm14b	90	56.983	Amphilophus_citrinellus
ENSAMXG00000002865	lsm14b	100	54.500	ENSAOCG00000006667	LSM14B	91	53.719	Amphiprion_ocellaris
ENSAMXG00000002865	lsm14b	90	62.465	ENSAOCG00000012380	lsm14b	90	61.345	Amphiprion_ocellaris
ENSAMXG00000002865	lsm14b	90	58.659	ENSAPEG00000023633	lsm14b	89	54.396	Amphiprion_percula
ENSAMXG00000002865	lsm14b	90	61.064	ENSATEG00000016603	lsm14b	90	59.944	Anabas_testudineus
ENSAMXG00000002865	lsm14b	70	45.253	ENSATEG00000015895	LSM14B	84	45.848	Anabas_testudineus
ENSAMXG00000002865	lsm14b	84	52.128	ENSAPLG00000013203	LSM14B	91	52.022	Anas_platyrhynchos
ENSAMXG00000002865	lsm14b	100	59.453	ENSACAG00000016195	LSM14B	90	59.726	Anolis_carolinensis
ENSAMXG00000002865	lsm14b	99	61.654	ENSANAG00000037915	LSM14B	99	61.153	Aotus_nancymaae
ENSAMXG00000002865	lsm14b	90	60.224	ENSACLG00000019663	lsm14b	90	59.831	Astatotilapia_calliptera
ENSAMXG00000002865	lsm14b	99	55.936	ENSBTAG00000021558	LSM14B	91	55.362	Bos_taurus
ENSAMXG00000002865	lsm14b	99	60.934	ENSCJAG00000014434	LSM14B	99	60.934	Callithrix_jacchus
ENSAMXG00000002865	lsm14b	90	52.488	ENSCAFG00000012518	LSM14B	89	51.648	Canis_familiaris
ENSAMXG00000002865	lsm14b	99	61.750	ENSCAFG00020022150	LSM14B	99	61.905	Canis_lupus_dingo
ENSAMXG00000002865	lsm14b	99	60.902	ENSCHIG00000010284	-	99	60.902	Capra_hircus
ENSAMXG00000002865	lsm14b	99	46.402	ENSCHIG00000022681	-	90	46.849	Capra_hircus
ENSAMXG00000002865	lsm14b	90	57.939	ENSTSYG00000031914	LSM14B	89	57.660	Carlito_syrichta
ENSAMXG00000002865	lsm14b	90	58.333	ENSCAPG00000013059	LSM14B	89	57.704	Cavia_aperea
ENSAMXG00000002865	lsm14b	90	58.496	ENSCPOG00000038080	LSM14B	89	57.879	Cavia_porcellus
ENSAMXG00000002865	lsm14b	92	44.444	ENSCCAG00000024900	-	75	43.850	Cebus_capucinus
ENSAMXG00000002865	lsm14b	99	61.153	ENSCCAG00000021267	LSM14B	99	60.902	Cebus_capucinus
ENSAMXG00000002865	lsm14b	99	61.654	ENSCATG00000036006	LSM14B	99	60.934	Cercocebus_atys
ENSAMXG00000002865	lsm14b	90	58.496	ENSCLAG00000003186	LSM14B	100	57.766	Chinchilla_lanigera
ENSAMXG00000002865	lsm14b	99	56.164	ENSCSAG00000015729	LSM14B	99	55.381	Chlorocebus_sabaeus
ENSAMXG00000002865	lsm14b	92	56.511	ENSCPBG00000027065	LSM14B	91	56.468	Chrysemys_picta_bellii
ENSAMXG00000002865	lsm14b	90	58.496	ENSCANG00000036986	LSM14B	100	57.221	Colobus_angolensis_palliatus
ENSAMXG00000002865	lsm14b	99	61.404	ENSCGRG00001018399	Lsm14b	99	61.153	Cricetulus_griseus_chok1gshd
ENSAMXG00000002865	lsm14b	64	48.450	ENSCGRG00000002484	-	95	46.586	Cricetulus_griseus_crigri
ENSAMXG00000002865	lsm14b	62	47.059	ENSCGRG00000006111	-	90	45.775	Cricetulus_griseus_crigri
ENSAMXG00000002865	lsm14b	99	59.343	ENSCSEG00000004722	lsm14b	90	59.610	Cynoglossus_semilaevis
ENSAMXG00000002865	lsm14b	97	48.507	ENSCSEG00000020669	LSM14B	91	48.656	Cynoglossus_semilaevis
ENSAMXG00000002865	lsm14b	66	40.000	ENSCVAG00000012433	-	89	36.328	Cyprinodon_variegatus
ENSAMXG00000002865	lsm14b	92	64.674	ENSDARG00000025386	lsm14b	91	66.389	Danio_rerio
ENSAMXG00000002865	lsm14b	70	47.352	ENSDNOG00000025246	LSM14B	88	45.423	Dasypus_novemcinctus
ENSAMXG00000002865	lsm14b	90	57.459	ENSDORG00000016683	Lsm14b	100	46.809	Dipodomys_ordii
ENSAMXG00000002865	lsm14b	93	51.344	ENSETEG00000001869	-	89	49.162	Echinops_telfairi
ENSAMXG00000002865	lsm14b	60	51.899	ENSETEG00000011188	-	96	50.622	Echinops_telfairi
ENSAMXG00000002865	lsm14b	70	50.355	ENSEASG00005023218	LSM14B	100	48.084	Equus_asinus_asinus
ENSAMXG00000002865	lsm14b	99	61.153	ENSECAG00000010659	LSM14B	99	60.599	Equus_caballus
ENSAMXG00000002865	lsm14b	56	69.000	ENSEEUG00000007331	LSM14B	77	70.000	Erinaceus_europaeus
ENSAMXG00000002865	lsm14b	98	67.424	ENSELUG00000005780	lsm14b	91	66.301	Esox_lucius
ENSAMXG00000002865	lsm14b	100	62.814	ENSELUG00000016299	LSM14B	100	61.307	Esox_lucius
ENSAMXG00000002865	lsm14b	99	62.155	ENSFCAG00000003248	LSM14B	99	62.155	Felis_catus
ENSAMXG00000002865	lsm14b	82	52.973	ENSFALG00000010618	LSM14B	90	52.877	Ficedula_albicollis
ENSAMXG00000002865	lsm14b	90	57.660	ENSFDAG00000002214	LSM14B	100	57.660	Fukomys_damarensis
ENSAMXG00000002865	lsm14b	81	52.294	ENSFHEG00000003362	LSM14B	82	50.592	Fundulus_heteroclitus
ENSAMXG00000002865	lsm14b	91	57.341	ENSFHEG00000006237	lsm14b	90	51.882	Fundulus_heteroclitus
ENSAMXG00000002865	lsm14b	99	58.228	ENSGMOG00000017115	lsm14b	98	57.468	Gadus_morhua
ENSAMXG00000002865	lsm14b	92	62.366	ENSGALG00000005125	LSM14B	90	63.215	Gallus_gallus
ENSAMXG00000002865	lsm14b	90	52.661	ENSGAFG00000020318	lsm14b	90	50.829	Gambusia_affinis
ENSAMXG00000002865	lsm14b	68	43.657	ENSGAFG00000013723	LSM14B	85	41.322	Gambusia_affinis
ENSAMXG00000002865	lsm14b	91	59.890	ENSGACG00000009973	lsm14b	91	58.333	Gasterosteus_aculeatus
ENSAMXG00000002865	lsm14b	55	54.839	ENSGAGG00000004106	LSM14B	76	54.245	Gopherus_agassizii
ENSAMXG00000002865	lsm14b	91	57.534	ENSGGOG00000005630	LSM14B	95	56.836	Gorilla_gorilla
ENSAMXG00000002865	lsm14b	99	61.654	ENSHGLG00000015055	LSM14B	99	60.902	Heterocephalus_glaber_female
ENSAMXG00000002865	lsm14b	90	56.825	ENSHGLG00100015273	LSM14B	100	55.989	Heterocephalus_glaber_male
ENSAMXG00000002865	lsm14b	96	53.264	ENSHCOG00000018747	LSM14B	92	49.863	Hippocampus_comes
ENSAMXG00000002865	lsm14b	63	45.418	ENSHCOG00000004867	lsm14b	87	42.231	Hippocampus_comes
ENSAMXG00000002865	lsm14b	100	78.589	ENSIPUG00000014946	lsm14b	95	78.643	Ictalurus_punctatus
ENSAMXG00000002865	lsm14b	90	58.217	ENSSTOG00000020482	LSM14B	100	57.766	Ictidomys_tridecemlineatus
ENSAMXG00000002865	lsm14b	99	62.406	ENSJJAG00000012728	Lsm14b	99	62.217	Jaculus_jaculus
ENSAMXG00000002865	lsm14b	54	49.296	ENSKMAG00000012834	-	86	47.573	Kryptolebias_marmoratus
ENSAMXG00000002865	lsm14b	90	59.104	ENSKMAG00000017524	lsm14b	90	53.261	Kryptolebias_marmoratus
ENSAMXG00000002865	lsm14b	51	52.817	ENSLBEG00000007951	LSM14B	75	55.556	Labrus_bergylta
ENSAMXG00000002865	lsm14b	91	56.683	ENSLACG00000003849	LSM14B	100	57.306	Latimeria_chalumnae
ENSAMXG00000002865	lsm14b	100	68.983	ENSLOCG00000003746	lsm14b	100	68.657	Lepisosteus_oculatus
ENSAMXG00000002865	lsm14b	91	58.082	ENSLAFG00000007492	LSM14B	89	58.282	Loxodonta_africana
ENSAMXG00000002865	lsm14b	99	61.905	ENSMFAG00000041479	LSM14B	99	61.179	Macaca_fascicularis
ENSAMXG00000002865	lsm14b	99	61.905	ENSMMUG00000014084	LSM14B	99	61.179	Macaca_mulatta
ENSAMXG00000002865	lsm14b	99	61.905	ENSMNEG00000045573	LSM14B	99	61.179	Macaca_nemestrina
ENSAMXG00000002865	lsm14b	90	57.939	ENSMLEG00000040895	LSM14B	100	57.221	Mandrillus_leucophaeus
ENSAMXG00000002865	lsm14b	97	54.026	ENSMAMG00000024124	LSM14B	91	52.925	Mastacembelus_armatus
ENSAMXG00000002865	lsm14b	90	60.167	ENSMAMG00000020539	lsm14b	90	60.167	Mastacembelus_armatus
ENSAMXG00000002865	lsm14b	90	59.104	ENSMZEG00005000987	lsm14b	90	59.831	Maylandia_zebra
ENSAMXG00000002865	lsm14b	91	54.201	ENSMZEG00005026001	LSM14B	93	54.121	Maylandia_zebra
ENSAMXG00000002865	lsm14b	84	57.353	ENSMGAG00000005300	LSM14B	90	58.358	Meleagris_gallopavo
ENSAMXG00000002865	lsm14b	99	60.902	ENSMAUG00000020700	Lsm14b	99	60.652	Mesocricetus_auratus
ENSAMXG00000002865	lsm14b	99	62.657	ENSMICG00000014675	LSM14B	99	62.406	Microcebus_murinus
ENSAMXG00000002865	lsm14b	99	61.153	ENSMOCG00000020600	Lsm14b	99	60.902	Microtus_ochrogaster
ENSAMXG00000002865	lsm14b	63	41.463	ENSMOCG00000005119	-	91	41.429	Microtus_ochrogaster
ENSAMXG00000002865	lsm14b	91	57.105	ENSMMOG00000020042	lsm14b	93	56.989	Mola_mola
ENSAMXG00000002865	lsm14b	92	53.022	ENSMMOG00000017321	LSM14B	90	50.964	Mola_mola
ENSAMXG00000002865	lsm14b	62	47.931	ENSMODG00000016690	LSM14B	88	47.183	Monodelphis_domestica
ENSAMXG00000002865	lsm14b	100	56.618	ENSMALG00000004783	lsm14b	90	58.263	Monopterus_albus
ENSAMXG00000002865	lsm14b	93	53.867	ENSMALG00000022251	LSM14B	91	53.261	Monopterus_albus
ENSAMXG00000002865	lsm14b	99	60.902	MGP_CAROLIEiJ_G0024770	Lsm14b	90	61.326	Mus_caroli
ENSAMXG00000002865	lsm14b	99	60.902	ENSMUSG00000039108	Lsm14b	99	60.902	Mus_musculus
ENSAMXG00000002865	lsm14b	99	61.153	MGP_PahariEiJ_G0026214	Lsm14b	99	61.153	Mus_pahari
ENSAMXG00000002865	lsm14b	99	60.902	MGP_SPRETEiJ_G0025693	Lsm14b	99	60.902	Mus_spretus
ENSAMXG00000002865	lsm14b	95	52.029	ENSMPUG00000007584	LSM14B	91	48.953	Mustela_putorius_furo
ENSAMXG00000002865	lsm14b	99	62.563	ENSMLUG00000000304	LSM14B	99	60.804	Myotis_lucifugus
ENSAMXG00000002865	lsm14b	62	53.252	ENSNGAG00000016550	Lsm14b	100	52.362	Nannospalax_galili
ENSAMXG00000002865	lsm14b	90	58.496	ENSNLEG00000015757	LSM14B	100	57.766	Nomascus_leucogenys
ENSAMXG00000002865	lsm14b	67	76.923	ENSMEUG00000008267	-	64	77.622	Notamacropus_eugenii
ENSAMXG00000002865	lsm14b	99	62.155	ENSODEG00000004099	LSM14B	99	61.425	Octodon_degus
ENSAMXG00000002865	lsm14b	90	61.326	ENSONIG00000020318	lsm14b	90	60.665	Oreochromis_niloticus
ENSAMXG00000002865	lsm14b	73	57.439	ENSOANG00000003370	LSM14B	98	55.326	Ornithorhynchus_anatinus
ENSAMXG00000002865	lsm14b	90	57.618	ENSOCUG00000006279	LSM14B	89	57.357	Oryctolagus_cuniculus
ENSAMXG00000002865	lsm14b	93	48.641	ENSORLG00000028353	LSM14B	91	46.797	Oryzias_latipes
ENSAMXG00000002865	lsm14b	90	57.703	ENSORLG00000013525	lsm14b	90	55.801	Oryzias_latipes
ENSAMXG00000002865	lsm14b	90	57.983	ENSORLG00020020553	lsm14b	90	55.278	Oryzias_latipes_hni
ENSAMXG00000002865	lsm14b	63	36.594	ENSORLG00020018191	-	85	34.457	Oryzias_latipes_hni
ENSAMXG00000002865	lsm14b	90	57.983	ENSORLG00015016862	lsm14b	90	55.278	Oryzias_latipes_hsok
ENSAMXG00000002865	lsm14b	93	48.641	ENSORLG00015013157	LSM14B	91	46.797	Oryzias_latipes_hsok
ENSAMXG00000002865	lsm14b	65	36.434	ENSOMEG00000000171	-	83	34.025	Oryzias_melastigma
ENSAMXG00000002865	lsm14b	90	57.143	ENSOMEG00000023917	lsm14b	90	54.444	Oryzias_melastigma
ENSAMXG00000002865	lsm14b	99	57.175	ENSOGAG00000003915	LSM14B	91	56.110	Otolemur_garnettii
ENSAMXG00000002865	lsm14b	92	51.478	ENSOARG00000014706	LSM14B	88	51.105	Ovis_aries
ENSAMXG00000002865	lsm14b	91	57.534	ENSPPAG00000035799	LSM14B	95	56.836	Pan_paniscus
ENSAMXG00000002865	lsm14b	99	62.155	ENSPPRG00000009197	LSM14B	99	62.155	Panthera_pardus
ENSAMXG00000002865	lsm14b	62	50.400	ENSPTIG00000021518	LSM14B	91	47.535	Panthera_tigris_altaica
ENSAMXG00000002865	lsm14b	99	61.905	ENSPTRG00000013696	LSM14B	99	61.179	Pan_troglodytes
ENSAMXG00000002865	lsm14b	99	61.654	ENSPANG00000011747	LSM14B	99	60.934	Papio_anubis
ENSAMXG00000002865	lsm14b	100	71.465	ENSPKIG00000003275	lsm14b	86	90.323	Paramormyrops_kingsleyae
ENSAMXG00000002865	lsm14b	90	58.011	ENSPSIG00000014762	LSM14B	89	58.154	Pelodiscus_sinensis
ENSAMXG00000002865	lsm14b	99	61.055	ENSPEMG00000017688	Lsm14b	100	60.804	Peromyscus_maniculatus_bairdii
ENSAMXG00000002865	lsm14b	92	61.853	ENSPCIG00000013405	LSM14B	90	62.155	Phascolarctos_cinereus
ENSAMXG00000002865	lsm14b	99	55.471	ENSPFOG00000005631	lsm14b	90	53.867	Poecilia_formosa
ENSAMXG00000002865	lsm14b	99	54.962	ENSPLAG00000002449	lsm14b	90	53.315	Poecilia_latipinna
ENSAMXG00000002865	lsm14b	91	49.724	ENSPLAG00000005793	LSM14B	90	48.343	Poecilia_latipinna
ENSAMXG00000002865	lsm14b	91	56.510	ENSPMEG00000000745	lsm14b	90	53.867	Poecilia_mexicana
ENSAMXG00000002865	lsm14b	90	50.139	ENSPMEG00000022953	LSM14B	90	48.895	Poecilia_mexicana
ENSAMXG00000002865	lsm14b	63	37.687	ENSPREG00000007828	LSM14B	85	38.077	Poecilia_reticulata
ENSAMXG00000002865	lsm14b	99	56.219	ENSPPYG00000011194	LSM14B	99	52.439	Pongo_abelii
ENSAMXG00000002865	lsm14b	99	62.500	ENSPCOG00000013625	LSM14B	99	61.905	Propithecus_coquereli
ENSAMXG00000002865	lsm14b	100	83.797	ENSPNAG00000012777	lsm14b	100	83.038	Pygocentrus_nattereri
ENSAMXG00000002865	lsm14b	99	55.479	ENSRNOG00000054557	Lsm14b	91	54.364	Rattus_norvegicus
ENSAMXG00000002865	lsm14b	90	58.333	ENSRBIG00000033461	LSM14B	99	57.065	Rhinopithecus_bieti
ENSAMXG00000002865	lsm14b	91	59.290	ENSRROG00000042949	LSM14B	91	58.021	Rhinopithecus_roxellana
ENSAMXG00000002865	lsm14b	90	57.660	ENSSBOG00000032820	LSM14B	100	57.103	Saimiri_boliviensis_boliviensis
ENSAMXG00000002865	lsm14b	82	57.576	ENSSHAG00000015528	LSM14B	87	57.751	Sarcophilus_harrisii
ENSAMXG00000002865	lsm14b	91	69.529	ENSSFOG00015004627	lsm14b	91	68.698	Scleropages_formosus
ENSAMXG00000002865	lsm14b	100	55.025	ENSSMAG00000000135	LSM14B	91	53.867	Scophthalmus_maximus
ENSAMXG00000002865	lsm14b	100	58.213	ENSSMAG00000012725	lsm14b	91	59.946	Scophthalmus_maximus
ENSAMXG00000002865	lsm14b	93	59.290	ENSSDUG00000022770	LSM14B	91	59.331	Seriola_dumerili
ENSAMXG00000002865	lsm14b	90	62.707	ENSSDUG00000020977	lsm14b	90	60.942	Seriola_dumerili
ENSAMXG00000002865	lsm14b	63	47.727	ENSSLDG00000011354	-	88	47.909	Seriola_lalandi_dorsalis
ENSAMXG00000002865	lsm14b	53	52.358	ENSSARG00000007749	-	96	51.351	Sorex_araneus
ENSAMXG00000002865	lsm14b	92	56.204	ENSSPUG00000014360	LSM14B	93	60.745	Sphenodon_punctatus
ENSAMXG00000002865	lsm14b	68	42.705	ENSSPAG00000018854	-	86	39.844	Stegastes_partitus
ENSAMXG00000002865	lsm14b	90	61.798	ENSSPAG00000020915	lsm14b	89	61.972	Stegastes_partitus
ENSAMXG00000002865	lsm14b	99	60.100	ENSSSCG00000026052	LSM14B	75	60.440	Sus_scrofa
ENSAMXG00000002865	lsm14b	82	59.819	ENSTGUG00000007884	LSM14B	89	59.816	Taeniopygia_guttata
ENSAMXG00000002865	lsm14b	99	54.115	ENSTRUG00000011354	lsm14b	90	51.467	Takifugu_rubripes
ENSAMXG00000002865	lsm14b	93	54.987	ENSTRUG00000001529	LSM14B	91	54.670	Takifugu_rubripes
ENSAMXG00000002865	lsm14b	91	56.604	ENSTNIG00000002445	lsm14b	90	55.405	Tetraodon_nigroviridis
ENSAMXG00000002865	lsm14b	98	55.696	ENSUAMG00000025298	LSM14B	99	55.838	Ursus_americanus
ENSAMXG00000002865	lsm14b	98	55.696	ENSUMAG00000000480	LSM14B	99	55.838	Ursus_maritimus
ENSAMXG00000002865	lsm14b	90	57.576	ENSVVUG00000015920	LSM14B	88	57.538	Vulpes_vulpes
ENSAMXG00000002865	lsm14b	86	62.500	ENSXETG00000001997	lsm14b	100	61.318	Xenopus_tropicalis
ENSAMXG00000002865	lsm14b	90	54.622	ENSXMAG00000010013	lsm14b	90	52.210	Xiphophorus_maculatus