EuRBPDB

Description

Ensembl ID: ENSAMXG00000002894 (Gene tree)
Gene ID: 103044373
Gene Symbol: cirbpa
Alias: wu:fb12a12|wu:fb16h02|wu:fb55a06|wu:fc67h01|wu:fj10g10|zgc:109887|zgc:112425
Full Name: cold-inducible RNA-binding protein B
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 903 bases
Position: chr17:10722043-10722945
Accession: 103044373
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000002957	RRM_1	PF00076.22	1.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000002957	-	477	XM_007238413	ENSAMXP00000002957	158 (aa)	XP_007238475	W5K5U6

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000002894	cirbpa	53	38.889	ENSAMXG00000000687	elavl4	58	38.889
ENSAMXG00000002894	cirbpa	53	38.889	ENSAMXG00000036990	ELAVL2	56	38.356
ENSAMXG00000002894	cirbpa	53	32.530	ENSAMXG00000034719	-	59	34.247
ENSAMXG00000002894	cirbpa	57	39.286	ENSAMXG00000024951	-	57	39.759
ENSAMXG00000002894	cirbpa	54	38.889	ENSAMXG00000040498	elavl3	63	38.889
ENSAMXG00000002894	cirbpa	63	34.951	ENSAMXG00000034811	srsf4	67	34.211
ENSAMXG00000002894	cirbpa	70	40.278	ENSAMXG00000031223	elavl1a	67	40.278

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000002894	cirbpa	53	71.084	ENSELUG00000004675	-	57	71.084	Esox_lucius
ENSAMXG00000002894	cirbpa	81	64.062	ENSFHEG00000002580	cirbpa	50	72.289	Fundulus_heteroclitus
ENSAMXG00000002894	cirbpa	51	71.605	ENSHCOG00000001170	cirbpa	69	72.289	Hippocampus_comes
ENSAMXG00000002894	cirbpa	54	65.882	ENSLBEG00000027731	-	67	67.470	Labrus_bergylta
ENSAMXG00000002894	cirbpa	95	55.556	ENSLBEG00000000292	cirbpa	78	56.800	Labrus_bergylta
ENSAMXG00000002894	cirbpa	81	68.276	ENSPNAG00000019997	cirbpb	50	60.870	Pygocentrus_nattereri
ENSAMXG00000002894	cirbpa	51	72.840	ENSSPAG00000023037	cirbpa	51	73.494	Stegastes_partitus
ENSAMXG00000002894	cirbpa	84	65.152	ENSTRUG00000010187	cirbpa	61	73.494	Takifugu_rubripes
ENSAMXG00000002894	cirbpa	92	58.904	ENSXCOG00000008262	cirbpa	92	67.123	Xiphophorus_couchianus