EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000002899 (Gene tree)
Gene ID: 103040071
Gene Symbol: pop4
Alias: zgc:110597
Full Name: POP4 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 5093 bases
Position: chrAPWO02000051.1:4170238-4175330
Accession: 103040071
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000002951	UPF0086	PF01868.16	2.4e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000002951	-	1685	XM_007235907	ENSAMXP00000002951	220 (aa)	XP_007235969	W5K5U0

Gene Model

Click here to download ENSAMXG00000002899's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03008	Ribosome biogenesis in eukaryotes	KEGG
amex03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000002899's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000002899	pop4	100	58.636	ENSG00000105171	POP4	99	74.737	Homo_sapiens
ENSAMXG00000002899	pop4	98	58.140	ENSAMEG00000018329	-	98	58.140	Ailuropoda_melanoleuca
ENSAMXG00000002899	pop4	98	53.670	ENSAMEG00000003172	-	97	53.670	Ailuropoda_melanoleuca
ENSAMXG00000002899	pop4	97	68.224	ENSACIG00000008358	pop4	97	68.224	Amphilophus_citrinellus
ENSAMXG00000002899	pop4	90	70.149	ENSAOCG00000010116	pop4	98	70.149	Amphiprion_ocellaris
ENSAMXG00000002899	pop4	97	67.593	ENSAPEG00000002829	pop4	91	67.593	Amphiprion_percula
ENSAMXG00000002899	pop4	97	68.056	ENSATEG00000013028	pop4	97	68.056	Anabas_testudineus
ENSAMXG00000002899	pop4	92	59.406	ENSAPLG00000014051	POP4	98	59.406	Anas_platyrhynchos
ENSAMXG00000002899	pop4	92	64.851	ENSANAG00000020295	POP4	92	64.851	Aotus_nancymaae
ENSAMXG00000002899	pop4	97	68.224	ENSACLG00000000526	pop4	97	68.224	Astatotilapia_calliptera
ENSAMXG00000002899	pop4	100	60.455	ENSBTAG00000002223	POP4	100	60.455	Bos_taurus
ENSAMXG00000002899	pop4	53	33.333	WBGene00007603	C15C6.4	57	33.333	Caenorhabditis_elegans
ENSAMXG00000002899	pop4	100	61.086	ENSCJAG00000046750	POP4	97	70.115	Callithrix_jacchus
ENSAMXG00000002899	pop4	83	62.637	ENSCAFG00000007630	POP4	100	62.637	Canis_familiaris
ENSAMXG00000002899	pop4	100	60.455	ENSCHIG00000016743	POP4	100	60.455	Capra_hircus
ENSAMXG00000002899	pop4	100	58.636	ENSTSYG00000003488	POP4	100	58.636	Carlito_syrichta
ENSAMXG00000002899	pop4	98	45.116	ENSCAPG00000011105	POP4	99	45.116	Cavia_aperea
ENSAMXG00000002899	pop4	100	61.364	ENSCPOG00000002992	POP4	100	61.364	Cavia_porcellus
ENSAMXG00000002899	pop4	100	59.545	ENSCCAG00000020285	-	100	59.545	Cebus_capucinus
ENSAMXG00000002899	pop4	86	58.730	ENSCCAG00000034244	-	87	58.730	Cebus_capucinus
ENSAMXG00000002899	pop4	100	60.000	ENSCATG00000036022	POP4	99	75.789	Cercocebus_atys
ENSAMXG00000002899	pop4	100	60.455	ENSCLAG00000013162	POP4	100	60.455	Chinchilla_lanigera
ENSAMXG00000002899	pop4	98	60.930	ENSCSAG00000004868	POP4	99	60.930	Chlorocebus_sabaeus
ENSAMXG00000002899	pop4	99	45.413	ENSCHOG00000002071	POP4	100	45.413	Choloepus_hoffmanni
ENSAMXG00000002899	pop4	100	61.818	ENSCPBG00000016132	POP4	100	61.818	Chrysemys_picta_bellii
ENSAMXG00000002899	pop4	84	32.632	ENSCING00000023871	-	93	30.526	Ciona_intestinalis
ENSAMXG00000002899	pop4	90	65.327	ENSCANG00000005924	POP4	99	65.327	Colobus_angolensis_palliatus
ENSAMXG00000002899	pop4	100	58.182	ENSCGRG00001017185	Pop4	100	58.636	Cricetulus_griseus_chok1gshd
ENSAMXG00000002899	pop4	100	58.182	ENSCGRG00000008155	Pop4	100	58.636	Cricetulus_griseus_crigri
ENSAMXG00000002899	pop4	97	59.070	ENSCSEG00000002946	pop4	97	59.070	Cynoglossus_semilaevis
ENSAMXG00000002899	pop4	98	48.624	ENSCVAG00000018602	POP4	94	48.624	Cyprinodon_variegatus
ENSAMXG00000002899	pop4	97	77.570	ENSDARG00000101472	pop4	97	77.570	Danio_rerio
ENSAMXG00000002899	pop4	100	60.000	ENSDNOG00000047663	POP4	88	60.000	Dasypus_novemcinctus
ENSAMXG00000002899	pop4	77	55.294	ENSDORG00000008577	Pop4	99	55.294	Dipodomys_ordii
ENSAMXG00000002899	pop4	70	35.185	FBgn0035831	CG8038	77	35.185	Drosophila_melanogaster
ENSAMXG00000002899	pop4	98	49.767	ENSETEG00000003607	POP4	99	49.767	Echinops_telfairi
ENSAMXG00000002899	pop4	100	42.342	ENSEBUG00000008575	pop4	100	42.342	Eptatretus_burgeri
ENSAMXG00000002899	pop4	88	43.750	ENSEBUG00000004305	pop4	90	43.750	Eptatretus_burgeri
ENSAMXG00000002899	pop4	88	49.038	ENSEBUG00000010447	pop4	81	49.038	Eptatretus_burgeri
ENSAMXG00000002899	pop4	100	67.308	ENSECAG00000020206	POP4	82	67.308	Equus_caballus
ENSAMXG00000002899	pop4	88	46.907	ENSEEUG00000013109	POP4	97	46.907	Erinaceus_europaeus
ENSAMXG00000002899	pop4	97	72.897	ENSELUG00000019812	pop4	97	73.364	Esox_lucius
ENSAMXG00000002899	pop4	100	59.545	ENSFCAG00000001619	POP4	100	59.545	Felis_catus
ENSAMXG00000002899	pop4	100	58.636	ENSFALG00000000206	POP4	98	58.636	Ficedula_albicollis
ENSAMXG00000002899	pop4	100	61.818	ENSFDAG00000017859	POP4	100	61.818	Fukomys_damarensis
ENSAMXG00000002899	pop4	92	59.535	ENSFHEG00000012745	pop4	97	59.535	Fundulus_heteroclitus
ENSAMXG00000002899	pop4	76	73.529	ENSGMOG00000000335	pop4	85	73.529	Gadus_morhua
ENSAMXG00000002899	pop4	100	57.273	ENSGALG00000041972	POP4	92	57.273	Gallus_gallus
ENSAMXG00000002899	pop4	80	60.556	ENSGAFG00000003571	pop4	99	60.556	Gambusia_affinis
ENSAMXG00000002899	pop4	96	65.888	ENSGACG00000014510	pop4	95	72.989	Gasterosteus_aculeatus
ENSAMXG00000002899	pop4	100	62.727	ENSGAGG00000024544	POP4	79	62.727	Gopherus_agassizii
ENSAMXG00000002899	pop4	92	63.861	ENSGGOG00000038346	POP4	92	63.861	Gorilla_gorilla
ENSAMXG00000002899	pop4	96	68.396	ENSHBUG00000021821	pop4	96	68.396	Haplochromis_burtoni
ENSAMXG00000002899	pop4	98	61.395	ENSHGLG00000015798	POP4	98	61.395	Heterocephalus_glaber_female
ENSAMXG00000002899	pop4	100	60.455	ENSHGLG00100009737	POP4	100	60.455	Heterocephalus_glaber_male
ENSAMXG00000002899	pop4	100	64.286	ENSHCOG00000020937	pop4	100	64.286	Hippocampus_comes
ENSAMXG00000002899	pop4	100	77.273	ENSIPUG00000013652	pop4	100	77.273	Ictalurus_punctatus
ENSAMXG00000002899	pop4	100	60.455	ENSSTOG00000011016	POP4	100	60.455	Ictidomys_tridecemlineatus
ENSAMXG00000002899	pop4	98	62.963	ENSJJAG00000013376	Pop4	100	60.909	Jaculus_jaculus
ENSAMXG00000002899	pop4	100	67.265	ENSKMAG00000012250	pop4	100	67.265	Kryptolebias_marmoratus
ENSAMXG00000002899	pop4	100	61.883	ENSLBEG00000018846	-	100	62.332	Labrus_bergylta
ENSAMXG00000002899	pop4	100	61.883	ENSLBEG00000014139	pop4	100	62.332	Labrus_bergylta
ENSAMXG00000002899	pop4	100	57.273	ENSLACG00000008581	POP4	99	57.273	Latimeria_chalumnae
ENSAMXG00000002899	pop4	97	71.963	ENSLOCG00000005597	pop4	97	71.963	Lepisosteus_oculatus
ENSAMXG00000002899	pop4	98	61.860	ENSLAFG00000000084	POP4	98	61.860	Loxodonta_africana
ENSAMXG00000002899	pop4	100	60.000	ENSMFAG00000029606	POP4	100	60.000	Macaca_fascicularis
ENSAMXG00000002899	pop4	100	60.633	ENSMMUG00000017424	POP4	100	60.633	Macaca_mulatta
ENSAMXG00000002899	pop4	100	60.633	ENSMNEG00000031374	POP4	100	60.633	Macaca_nemestrina
ENSAMXG00000002899	pop4	100	59.091	ENSMLEG00000043454	POP4	100	60.181	Mandrillus_leucophaeus
ENSAMXG00000002899	pop4	97	69.444	ENSMAMG00000011716	pop4	97	69.444	Mastacembelus_armatus
ENSAMXG00000002899	pop4	97	68.224	ENSMZEG00005002360	pop4	97	68.224	Maylandia_zebra
ENSAMXG00000002899	pop4	99	58.447	ENSMGAG00000005337	POP4	98	58.447	Meleagris_gallopavo
ENSAMXG00000002899	pop4	100	58.182	ENSMAUG00000020110	Pop4	100	58.182	Mesocricetus_auratus
ENSAMXG00000002899	pop4	99	58.065	ENSMICG00000035730	POP4	96	60.185	Microcebus_murinus
ENSAMXG00000002899	pop4	97	66.822	ENSMMOG00000015321	pop4	97	66.822	Mola_mola
ENSAMXG00000002899	pop4	98	60.465	ENSMODG00000029406	POP4	93	60.465	Monodelphis_domestica
ENSAMXG00000002899	pop4	100	70.588	ENSMALG00000012571	pop4	100	70.588	Monopterus_albus
ENSAMXG00000002899	pop4	100	59.729	MGP_CAROLIEiJ_G0029600	Pop4	100	59.276	Mus_caroli
ENSAMXG00000002899	pop4	100	59.276	ENSMUSG00000030423	Pop4	100	59.276	Mus_musculus
ENSAMXG00000002899	pop4	100	59.091	MGP_SPRETEiJ_G0030699	Pop4	100	60.000	Mus_spretus
ENSAMXG00000002899	pop4	100	58.636	ENSMPUG00000008041	-	100	58.636	Mustela_putorius_furo
ENSAMXG00000002899	pop4	100	49.774	ENSMPUG00000008063	-	100	49.774	Mustela_putorius_furo
ENSAMXG00000002899	pop4	98	46.296	ENSMLUG00000010774	POP4	98	46.296	Myotis_lucifugus
ENSAMXG00000002899	pop4	57	69.600	ENSMEUG00000003636	-	100	69.600	Notamacropus_eugenii
ENSAMXG00000002899	pop4	88	65.979	ENSOPRG00000004736	POP4	97	65.979	Ochotona_princeps
ENSAMXG00000002899	pop4	98	61.395	ENSODEG00000013025	POP4	99	63.158	Octodon_degus
ENSAMXG00000002899	pop4	97	68.224	ENSONIG00000003458	pop4	95	68.224	Oreochromis_niloticus
ENSAMXG00000002899	pop4	92	64.356	ENSOCUG00000015974	POP4	92	64.356	Oryctolagus_cuniculus
ENSAMXG00000002899	pop4	96	63.551	ENSORLG00000020317	pop4	96	63.551	Oryzias_latipes
ENSAMXG00000002899	pop4	100	61.883	ENSORLG00015011624	pop4	100	61.883	Oryzias_latipes_hsok
ENSAMXG00000002899	pop4	96	63.551	ENSOMEG00000002538	pop4	96	63.551	Oryzias_melastigma
ENSAMXG00000002899	pop4	99	61.644	ENSOGAG00000011168	POP4	99	62.727	Otolemur_garnettii
ENSAMXG00000002899	pop4	100	61.086	ENSOARG00000004041	POP4	100	61.086	Ovis_aries
ENSAMXG00000002899	pop4	100	59.091	ENSPPAG00000040372	POP4	100	59.091	Pan_paniscus
ENSAMXG00000002899	pop4	100	59.545	ENSPPRG00000010502	POP4	100	59.545	Panthera_pardus
ENSAMXG00000002899	pop4	100	59.545	ENSPTIG00000016598	POP4	100	59.545	Panthera_tigris_altaica
ENSAMXG00000002899	pop4	100	59.091	ENSPTRG00000010779	POP4	100	59.091	Pan_troglodytes
ENSAMXG00000002899	pop4	100	60.000	ENSPANG00000008546	POP4	100	60.000	Papio_anubis
ENSAMXG00000002899	pop4	91	70.936	ENSPKIG00000004468	pop4	89	70.936	Paramormyrops_kingsleyae
ENSAMXG00000002899	pop4	98	63.721	ENSPSIG00000015690	POP4	100	64.356	Pelodiscus_sinensis
ENSAMXG00000002899	pop4	90	55.392	ENSPMGG00000008608	pop4	98	56.373	Periophthalmus_magnuspinnatus
ENSAMXG00000002899	pop4	98	58.605	ENSPEMG00000014034	-	95	61.165	Peromyscus_maniculatus_bairdii
ENSAMXG00000002899	pop4	98	50.926	ENSPEMG00000019982	-	97	50.926	Peromyscus_maniculatus_bairdii
ENSAMXG00000002899	pop4	66	64.138	ENSPMAG00000006265	pop4	100	53.030	Petromyzon_marinus
ENSAMXG00000002899	pop4	100	59.545	ENSPCIG00000024738	POP4	95	59.545	Phascolarctos_cinereus
ENSAMXG00000002899	pop4	100	62.780	ENSPFOG00000000925	pop4	100	62.780	Poecilia_formosa
ENSAMXG00000002899	pop4	100	63.229	ENSPLAG00000003161	pop4	100	63.229	Poecilia_latipinna
ENSAMXG00000002899	pop4	100	62.780	ENSPMEG00000002475	pop4	100	62.780	Poecilia_mexicana
ENSAMXG00000002899	pop4	98	63.303	ENSPREG00000022403	pop4	92	63.303	Poecilia_reticulata
ENSAMXG00000002899	pop4	100	59.545	ENSPPYG00000009805	POP4	100	59.545	Pongo_abelii
ENSAMXG00000002899	pop4	99	58.525	ENSPCAG00000007737	POP4	99	58.525	Procavia_capensis
ENSAMXG00000002899	pop4	100	60.455	ENSPCOG00000018055	POP4	100	60.455	Propithecus_coquereli
ENSAMXG00000002899	pop4	100	59.091	ENSPVAG00000006069	POP4	100	59.091	Pteropus_vampyrus
ENSAMXG00000002899	pop4	97	67.757	ENSPNYG00000020038	pop4	97	67.757	Pundamilia_nyererei
ENSAMXG00000002899	pop4	100	79.545	ENSPNAG00000005591	pop4	100	79.545	Pygocentrus_nattereri
ENSAMXG00000002899	pop4	100	60.633	ENSRNOG00000027646	Pop4	100	60.181	Rattus_norvegicus
ENSAMXG00000002899	pop4	78	56.395	ENSRBIG00000044769	POP4	89	63.043	Rhinopithecus_bieti
ENSAMXG00000002899	pop4	100	60.000	ENSRROG00000028903	POP4	100	60.000	Rhinopithecus_roxellana
ENSAMXG00000002899	pop4	57	34.532	YBR257W	-	50	34.532	Saccharomyces_cerevisiae
ENSAMXG00000002899	pop4	100	60.000	ENSSBOG00000032445	POP4	100	60.000	Saimiri_boliviensis_boliviensis
ENSAMXG00000002899	pop4	98	59.070	ENSSHAG00000016888	POP4	98	59.070	Sarcophilus_harrisii
ENSAMXG00000002899	pop4	96	69.302	ENSSFOG00015014556	pop4	95	69.302	Scleropages_formosus
ENSAMXG00000002899	pop4	100	69.955	ENSSMAG00000016611	pop4	100	69.955	Scophthalmus_maximus
ENSAMXG00000002899	pop4	97	66.204	ENSSDUG00000019865	pop4	87	66.204	Seriola_dumerili
ENSAMXG00000002899	pop4	97	67.130	ENSSLDG00000001763	pop4	96	67.130	Seriola_lalandi_dorsalis
ENSAMXG00000002899	pop4	100	59.545	ENSSARG00000004748	POP4	99	59.070	Sorex_araneus
ENSAMXG00000002899	pop4	97	69.907	ENSSPAG00000014364	pop4	96	69.907	Stegastes_partitus
ENSAMXG00000002899	pop4	100	60.000	ENSSSCG00000002854	POP4	100	60.000	Sus_scrofa
ENSAMXG00000002899	pop4	90	61.307	ENSTGUG00000008953	POP4	99	61.307	Taeniopygia_guttata
ENSAMXG00000002899	pop4	92	68.473	ENSTNIG00000006401	pop4	100	68.473	Tetraodon_nigroviridis
ENSAMXG00000002899	pop4	100	61.538	ENSTBEG00000002194	POP4	100	61.538	Tupaia_belangeri
ENSAMXG00000002899	pop4	100	60.633	ENSTTRG00000005882	POP4	100	60.633	Tursiops_truncatus
ENSAMXG00000002899	pop4	100	57.273	ENSUAMG00000003049	-	100	57.273	Ursus_americanus
ENSAMXG00000002899	pop4	100	57.273	ENSUMAG00000007522	-	100	57.273	Ursus_maritimus
ENSAMXG00000002899	pop4	94	60.680	ENSVVUG00000016876	-	72	60.680	Vulpes_vulpes
ENSAMXG00000002899	pop4	98	60.000	ENSXETG00000017598	pop4	98	60.000	Xenopus_tropicalis
ENSAMXG00000002899	pop4	98	63.470	ENSXCOG00000017695	pop4	91	63.470	Xiphophorus_couchianus
ENSAMXG00000002899	pop4	98	63.470	ENSXMAG00000013862	pop4	91	63.470	Xiphophorus_maculatus