EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000003002 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 2313 bases
Position: chrAPWO02002006.1:138285-140597
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000003051	zf-C2H2	PF00096.26	9.2e-52	1	9
ENSAMXP00000003051	zf-C2H2	PF00096.26	9.2e-52	2	9
ENSAMXP00000003051	zf-C2H2	PF00096.26	9.2e-52	3	9
ENSAMXP00000003051	zf-C2H2	PF00096.26	9.2e-52	4	9
ENSAMXP00000003051	zf-C2H2	PF00096.26	9.2e-52	5	9
ENSAMXP00000003051	zf-C2H2	PF00096.26	9.2e-52	6	9
ENSAMXP00000003051	zf-C2H2	PF00096.26	9.2e-52	7	9
ENSAMXP00000003051	zf-C2H2	PF00096.26	9.2e-52	8	9
ENSAMXP00000003051	zf-C2H2	PF00096.26	9.2e-52	9	9
ENSAMXP00000003051	zf-met	PF12874.7	2.4e-12	1	3
ENSAMXP00000003051	zf-met	PF12874.7	2.4e-12	2	3
ENSAMXP00000003051	zf-met	PF12874.7	2.4e-12	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000003051	-	951	-	ENSAMXP00000003051	316 (aa)	-	W5K640

Gene Model

Click here to download ENSAMXG00000003002's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000003002's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000003002	-	98	57.746	ENSAMXG00000032237	-	99	57.746
ENSAMXG00000003002	-	89	46.000	ENSAMXG00000007441	-	57	42.286
ENSAMXG00000003002	-	90	65.942	ENSAMXG00000032619	-	99	65.942
ENSAMXG00000003002	-	99	65.314	ENSAMXG00000030742	-	99	65.314
ENSAMXG00000003002	-	94	58.824	ENSAMXG00000040677	-	86	62.500
ENSAMXG00000003002	-	91	69.957	ENSAMXG00000037703	-	93	69.957
ENSAMXG00000003002	-	96	73.180	ENSAMXG00000007092	-	98	73.180
ENSAMXG00000003002	-	95	56.333	ENSAMXG00000043541	-	86	57.087
ENSAMXG00000003002	-	93	73.818	ENSAMXG00000031501	-	88	73.818
ENSAMXG00000003002	-	91	64.583	ENSAMXG00000041650	-	87	64.583
ENSAMXG00000003002	-	97	58.148	ENSAMXG00000042174	-	91	58.148
ENSAMXG00000003002	-	87	71.698	ENSAMXG00000031900	-	91	71.698
ENSAMXG00000003002	-	87	76.852	ENSAMXG00000035920	-	87	76.852
ENSAMXG00000003002	-	90	73.500	ENSAMXG00000035683	-	95	73.500
ENSAMXG00000003002	-	93	74.000	ENSAMXG00000039162	-	98	74.000
ENSAMXG00000003002	-	92	61.165	ENSAMXG00000036241	-	89	60.312
ENSAMXG00000003002	-	96	65.424	ENSAMXG00000035437	-	99	65.424
ENSAMXG00000003002	-	90	36.190	ENSAMXG00000044034	-	70	35.849
ENSAMXG00000003002	-	96	64.179	ENSAMXG00000010078	-	95	64.179
ENSAMXG00000003002	-	95	72.203	ENSAMXG00000043423	-	81	72.203
ENSAMXG00000003002	-	95	72.628	ENSAMXG00000037885	-	97	72.628
ENSAMXG00000003002	-	95	61.151	ENSAMXG00000038536	-	90	61.151
ENSAMXG00000003002	-	96	57.563	ENSAMXG00000012873	-	94	55.745
ENSAMXG00000003002	-	98	54.745	ENSAMXG00000038284	-	98	54.745
ENSAMXG00000003002	-	96	67.442	ENSAMXG00000010930	-	81	67.442
ENSAMXG00000003002	-	97	75.636	ENSAMXG00000039879	-	97	75.636
ENSAMXG00000003002	-	96	59.273	ENSAMXG00000043978	-	92	59.273
ENSAMXG00000003002	-	95	62.676	ENSAMXG00000001626	-	99	62.676
ENSAMXG00000003002	-	90	63.768	ENSAMXG00000037143	-	94	63.768
ENSAMXG00000003002	-	89	42.661	ENSAMXG00000035246	-	68	42.661
ENSAMXG00000003002	-	93	59.273	ENSAMXG00000038280	-	90	59.273
ENSAMXG00000003002	-	95	66.667	ENSAMXG00000035949	-	80	66.667
ENSAMXG00000003002	-	92	64.423	ENSAMXG00000043019	-	90	64.423
ENSAMXG00000003002	-	98	61.364	ENSAMXG00000013274	-	96	61.364
ENSAMXG00000003002	-	93	65.986	ENSAMXG00000033013	-	82	65.986
ENSAMXG00000003002	-	90	73.507	ENSAMXG00000018161	-	93	73.507
ENSAMXG00000003002	-	93	63.273	ENSAMXG00000031496	-	91	63.273
ENSAMXG00000003002	-	92	62.609	ENSAMXG00000036633	-	57	63.214
ENSAMXG00000003002	-	97	45.868	ENSAMXG00000007973	-	91	45.833
ENSAMXG00000003002	-	93	63.137	ENSAMXG00000037717	-	96	63.137
ENSAMXG00000003002	-	96	59.036	ENSAMXG00000037709	-	87	59.036
ENSAMXG00000003002	-	97	40.909	ENSAMXG00000033299	-	71	40.909
ENSAMXG00000003002	-	90	67.029	ENSAMXG00000042938	-	88	67.029
ENSAMXG00000003002	-	87	45.963	ENSAMXG00000044096	-	79	45.963
ENSAMXG00000003002	-	86	42.657	ENSAMXG00000034873	-	82	42.657
ENSAMXG00000003002	-	88	72.453	ENSAMXG00000039744	-	99	72.453
ENSAMXG00000003002	-	96	62.681	ENSAMXG00000044110	-	88	62.681
ENSAMXG00000003002	-	96	67.982	ENSAMXG00000038453	-	90	67.188
ENSAMXG00000003002	-	87	40.404	ENSAMXG00000029059	-	62	40.404
ENSAMXG00000003002	-	97	61.633	ENSAMXG00000036257	-	92	61.633
ENSAMXG00000003002	-	94	75.686	ENSAMXG00000040212	-	87	75.686
ENSAMXG00000003002	-	95	71.025	ENSAMXG00000008613	-	98	71.025
ENSAMXG00000003002	-	96	66.827	ENSAMXG00000044028	-	95	66.827
ENSAMXG00000003002	-	96	70.956	ENSAMXG00000040630	-	99	70.956
ENSAMXG00000003002	-	94	74.254	ENSAMXG00000035809	-	99	74.254
ENSAMXG00000003002	-	96	51.965	ENSAMXG00000043178	-	74	53.266
ENSAMXG00000003002	-	93	73.077	ENSAMXG00000041404	-	98	72.993
ENSAMXG00000003002	-	92	58.621	ENSAMXG00000019489	-	97	58.621
ENSAMXG00000003002	-	93	66.202	ENSAMXG00000037326	-	93	66.202
ENSAMXG00000003002	-	92	75.000	ENSAMXG00000017609	-	78	75.000
ENSAMXG00000003002	-	95	54.658	ENSAMXG00000038325	-	98	56.507
ENSAMXG00000003002	-	90	48.864	ENSAMXG00000035127	-	90	46.154
ENSAMXG00000003002	-	94	30.457	ENSAMXG00000016620	-	81	30.457
ENSAMXG00000003002	-	88	52.174	ENSAMXG00000034333	-	86	52.174
ENSAMXG00000003002	-	93	72.441	ENSAMXG00000041975	-	86	72.441
ENSAMXG00000003002	-	91	40.179	ENSAMXG00000042191	zbtb47a	72	40.179
ENSAMXG00000003002	-	93	73.991	ENSAMXG00000031646	-	95	73.991
ENSAMXG00000003002	-	94	78.917	ENSAMXG00000034958	-	94	86.182
ENSAMXG00000003002	-	96	73.134	ENSAMXG00000031009	-	85	73.134
ENSAMXG00000003002	-	95	67.451	ENSAMXG00000042275	-	94	67.451
ENSAMXG00000003002	-	90	39.316	ENSAMXG00000033001	-	53	39.316
ENSAMXG00000003002	-	94	71.875	ENSAMXG00000036233	-	85	71.875
ENSAMXG00000003002	-	94	72.125	ENSAMXG00000024978	-	97	72.364
ENSAMXG00000003002	-	92	61.786	ENSAMXG00000044107	-	89	61.786
ENSAMXG00000003002	-	91	64.706	ENSAMXG00000043291	-	65	64.706
ENSAMXG00000003002	-	96	68.727	ENSAMXG00000041128	-	90	68.727
ENSAMXG00000003002	-	94	66.667	ENSAMXG00000037760	-	99	66.667
ENSAMXG00000003002	-	93	43.503	ENSAMXG00000041864	prdm5	87	43.503
ENSAMXG00000003002	-	96	69.318	ENSAMXG00000041865	-	97	69.318
ENSAMXG00000003002	-	88	50.769	ENSAMXG00000041862	-	95	50.769
ENSAMXG00000003002	-	97	69.874	ENSAMXG00000041861	-	91	69.874
ENSAMXG00000003002	-	90	66.798	ENSAMXG00000036849	-	76	66.798
ENSAMXG00000003002	-	90	66.197	ENSAMXG00000030530	-	100	67.537
ENSAMXG00000003002	-	98	64.906	ENSAMXG00000039752	-	96	64.906
ENSAMXG00000003002	-	96	57.840	ENSAMXG00000029783	-	86	58.156
ENSAMXG00000003002	-	98	70.849	ENSAMXG00000036567	-	76	70.849
ENSAMXG00000003002	-	87	68.116	ENSAMXG00000029518	-	51	68.116
ENSAMXG00000003002	-	97	71.937	ENSAMXG00000031794	-	97	71.937
ENSAMXG00000003002	-	98	56.678	ENSAMXG00000026144	-	95	56.678
ENSAMXG00000003002	-	95	67.658	ENSAMXG00000026142	-	94	67.658
ENSAMXG00000003002	-	94	54.795	ENSAMXG00000026143	-	98	55.516
ENSAMXG00000003002	-	90	37.879	ENSAMXG00000038235	snai2	51	37.879
ENSAMXG00000003002	-	94	62.553	ENSAMXG00000039700	-	94	62.553
ENSAMXG00000003002	-	92	68.553	ENSAMXG00000030963	-	64	68.553
ENSAMXG00000003002	-	93	59.477	ENSAMXG00000031307	-	72	59.477
ENSAMXG00000003002	-	90	68.023	ENSAMXG00000042774	-	94	68.023
ENSAMXG00000003002	-	88	59.524	ENSAMXG00000043302	-	73	59.524
ENSAMXG00000003002	-	93	65.530	ENSAMXG00000037981	-	77	65.530
ENSAMXG00000003002	-	93	64.808	ENSAMXG00000042633	-	99	64.808
ENSAMXG00000003002	-	95	43.796	ENSAMXG00000006669	GFI1	62	43.796
ENSAMXG00000003002	-	93	67.368	ENSAMXG00000039408	-	92	67.368
ENSAMXG00000003002	-	94	65.432	ENSAMXG00000041609	-	96	70.667
ENSAMXG00000003002	-	96	75.714	ENSAMXG00000043251	-	95	75.714
ENSAMXG00000003002	-	91	62.992	ENSAMXG00000034402	-	94	62.992
ENSAMXG00000003002	-	91	77.432	ENSAMXG00000029178	-	97	77.432
ENSAMXG00000003002	-	93	67.464	ENSAMXG00000035145	-	66	67.464
ENSAMXG00000003002	-	99	62.346	ENSAMXG00000032212	-	87	62.346
ENSAMXG00000003002	-	92	72.054	ENSAMXG00000039977	-	93	72.054
ENSAMXG00000003002	-	91	58.077	ENSAMXG00000038905	-	90	58.077
ENSAMXG00000003002	-	96	61.747	ENSAMXG00000031844	-	98	60.843
ENSAMXG00000003002	-	97	65.693	ENSAMXG00000037923	-	99	65.693
ENSAMXG00000003002	-	98	57.843	ENSAMXG00000009563	-	96	61.290
ENSAMXG00000003002	-	96	70.943	ENSAMXG00000034847	-	88	70.943
ENSAMXG00000003002	-	90	65.462	ENSAMXG00000017959	-	94	65.462
ENSAMXG00000003002	-	95	57.812	ENSAMXG00000034096	-	89	57.812
ENSAMXG00000003002	-	99	67.138	ENSAMXG00000040806	-	93	67.138
ENSAMXG00000003002	-	91	64.504	ENSAMXG00000029109	-	87	64.504
ENSAMXG00000003002	-	98	37.979	ENSAMXG00000025761	-	89	37.979
ENSAMXG00000003002	-	95	60.432	ENSAMXG00000042746	-	90	60.432
ENSAMXG00000003002	-	96	45.890	ENSAMXG00000034934	-	79	45.890
ENSAMXG00000003002	-	86	74.131	ENSAMXG00000025455	-	98	74.131
ENSAMXG00000003002	-	96	68.924	ENSAMXG00000025452	-	99	69.818
ENSAMXG00000003002	-	98	70.485	ENSAMXG00000031489	-	96	70.485
ENSAMXG00000003002	-	90	75.155	ENSAMXG00000029878	-	98	75.155
ENSAMXG00000003002	-	97	63.636	ENSAMXG00000035875	-	99	63.636
ENSAMXG00000003002	-	95	46.263	ENSAMXG00000014745	-	93	47.500
ENSAMXG00000003002	-	90	76.271	ENSAMXG00000004610	-	99	76.271
ENSAMXG00000003002	-	96	72.727	ENSAMXG00000025965	-	96	72.727
ENSAMXG00000003002	-	97	72.047	ENSAMXG00000039432	-	97	72.047
ENSAMXG00000003002	-	96	69.434	ENSAMXG00000039004	-	88	69.434
ENSAMXG00000003002	-	92	69.900	ENSAMXG00000011804	-	95	69.900
ENSAMXG00000003002	-	87	44.545	ENSAMXG00000015228	-	61	44.545
ENSAMXG00000003002	-	96	63.415	ENSAMXG00000029161	-	89	63.415
ENSAMXG00000003002	-	97	58.156	ENSAMXG00000030659	-	80	58.156
ENSAMXG00000003002	-	97	62.681	ENSAMXG00000039770	-	91	62.681
ENSAMXG00000003002	-	98	62.044	ENSAMXG00000036915	-	95	62.044
ENSAMXG00000003002	-	95	72.984	ENSAMXG00000032457	-	91	72.984
ENSAMXG00000003002	-	95	66.667	ENSAMXG00000041721	-	75	66.667
ENSAMXG00000003002	-	93	67.883	ENSAMXG00000041725	-	96	67.883
ENSAMXG00000003002	-	96	67.376	ENSAMXG00000000353	-	98	67.376
ENSAMXG00000003002	-	99	37.282	ENSAMXG00000024907	znf319b	88	37.895
ENSAMXG00000003002	-	90	68.582	ENSAMXG00000039016	-	80	68.582
ENSAMXG00000003002	-	90	68.478	ENSAMXG00000029828	-	97	68.478
ENSAMXG00000003002	-	96	73.913	ENSAMXG00000009558	-	97	73.913
ENSAMXG00000003002	-	93	72.047	ENSAMXG00000036762	-	97	72.047
ENSAMXG00000003002	-	97	59.041	ENSAMXG00000012604	-	96	59.041
ENSAMXG00000003002	-	94	51.613	ENSAMXG00000034857	-	69	51.613
ENSAMXG00000003002	-	93	65.611	ENSAMXG00000032841	-	81	65.611
ENSAMXG00000003002	-	98	61.250	ENSAMXG00000042167	-	98	61.250
ENSAMXG00000003002	-	92	55.731	ENSAMXG00000034344	-	77	55.731
ENSAMXG00000003002	-	96	64.311	ENSAMXG00000038324	-	75	64.311
ENSAMXG00000003002	-	91	66.667	ENSAMXG00000042593	-	92	66.667
ENSAMXG00000003002	-	95	62.182	ENSAMXG00000033201	-	98	62.182
ENSAMXG00000003002	-	93	72.152	ENSAMXG00000035690	-	76	72.152
ENSAMXG00000003002	-	96	57.042	ENSAMXG00000033124	-	63	57.042
ENSAMXG00000003002	-	99	33.333	ENSAMXG00000035525	znf646	72	36.287
ENSAMXG00000003002	-	87	55.696	ENSAMXG00000038122	-	93	55.696
ENSAMXG00000003002	-	90	69.903	ENSAMXG00000039182	-	64	69.903
ENSAMXG00000003002	-	90	35.075	ENSAMXG00000038085	scrt1a	51	35.075
ENSAMXG00000003002	-	90	70.943	ENSAMXG00000033500	-	92	73.810
ENSAMXG00000003002	-	91	46.097	ENSAMXG00000012589	-	83	46.097
ENSAMXG00000003002	-	91	60.072	ENSAMXG00000029960	-	96	64.388
ENSAMXG00000003002	-	96	73.004	ENSAMXG00000038636	-	98	73.004
ENSAMXG00000003002	-	87	48.837	ENSAMXG00000037382	-	75	36.111
ENSAMXG00000003002	-	93	33.562	ENSAMXG00000039849	snai1b	55	33.562
ENSAMXG00000003002	-	90	52.778	ENSAMXG00000035286	si:ch1073-224n8.1	85	44.019
ENSAMXG00000003002	-	98	60.333	ENSAMXG00000010805	-	99	62.007
ENSAMXG00000003002	-	97	47.541	ENSAMXG00000013492	-	96	49.301
ENSAMXG00000003002	-	93	72.137	ENSAMXG00000030911	-	67	72.137
ENSAMXG00000003002	-	93	45.395	ENSAMXG00000033252	-	91	47.674
ENSAMXG00000003002	-	87	61.404	ENSAMXG00000042784	-	94	61.404
ENSAMXG00000003002	-	94	39.713	ENSAMXG00000039622	zbtb41	52	36.923
ENSAMXG00000003002	-	91	67.273	ENSAMXG00000009776	-	97	67.323

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000003002	-	88	54.647	ENSAPLG00000012660	-	81	54.647	Anas_platyrhynchos
ENSAMXG00000003002	-	96	51.832	ENSCPBG00000002014	-	58	51.471	Chrysemys_picta_bellii
ENSAMXG00000003002	-	97	56.154	ENSEASG00005020341	-	97	56.154	Equus_asinus_asinus
ENSAMXG00000003002	-	98	54.615	ENSECAG00000039445	-	94	54.615	Equus_caballus
ENSAMXG00000003002	-	97	56.154	ENSECAG00000017293	-	97	56.154	Equus_caballus
ENSAMXG00000003002	-	96	59.274	ENSGAGG00000011574	-	79	59.274	Gopherus_agassizii
ENSAMXG00000003002	-	96	60.902	ENSGAGG00000017986	-	90	59.391	Gopherus_agassizii
ENSAMXG00000003002	-	96	56.727	ENSGAGG00000019349	-	75	56.727	Gopherus_agassizii
ENSAMXG00000003002	-	91	54.656	ENSGAGG00000000971	-	93	54.656	Gopherus_agassizii
ENSAMXG00000003002	-	96	61.000	ENSGAGG00000008773	-	82	57.651	Gopherus_agassizii
ENSAMXG00000003002	-	88	61.140	ENSGAGG00000009739	-	99	61.140	Gopherus_agassizii
ENSAMXG00000003002	-	98	57.706	ENSGAGG00000004740	-	83	59.429	Gopherus_agassizii
ENSAMXG00000003002	-	89	56.485	ENSGAGG00000015451	-	88	56.485	Gopherus_agassizii
ENSAMXG00000003002	-	97	56.538	ENSGAGG00000006960	-	79	56.538	Gopherus_agassizii
ENSAMXG00000003002	-	90	59.664	ENSGAGG00000006683	-	95	59.659	Gopherus_agassizii
ENSAMXG00000003002	-	90	64.961	ENSIPUG00000015177	-	56	64.961	Ictalurus_punctatus
ENSAMXG00000003002	-	96	69.804	ENSIPUG00000015400	-	98	65.714	Ictalurus_punctatus
ENSAMXG00000003002	-	98	53.650	ENSMPUG00000008437	-	92	53.650	Mustela_putorius_furo
ENSAMXG00000003002	-	98	56.569	ENSPTIG00000009259	-	99	56.569	Panthera_tigris_altaica
ENSAMXG00000003002	-	96	54.783	ENSPSIG00000016247	-	53	54.783	Pelodiscus_sinensis
ENSAMXG00000003002	-	97	53.414	ENSPNAG00000029386	-	89	53.414	Pygocentrus_nattereri
ENSAMXG00000003002	-	93	65.315	ENSPNAG00000002287	-	86	65.827	Pygocentrus_nattereri
ENSAMXG00000003002	-	88	61.628	ENSPNAG00000021942	-	92	61.628	Pygocentrus_nattereri
ENSAMXG00000003002	-	91	68.231	ENSPNAG00000018471	-	82	68.231	Pygocentrus_nattereri
ENSAMXG00000003002	-	92	67.681	ENSPNAG00000003526	-	83	67.681	Pygocentrus_nattereri
ENSAMXG00000003002	-	91	69.697	ENSPNAG00000016025	-	92	69.697	Pygocentrus_nattereri
ENSAMXG00000003002	-	91	69.200	ENSPNAG00000018437	-	78	69.014	Pygocentrus_nattereri
ENSAMXG00000003002	-	91	66.667	ENSPNAG00000005914	-	75	66.667	Pygocentrus_nattereri
ENSAMXG00000003002	-	90	63.636	ENSPNAG00000017455	-	84	58.214	Pygocentrus_nattereri
ENSAMXG00000003002	-	97	64.234	ENSPNAG00000017479	-	88	64.234	Pygocentrus_nattereri
ENSAMXG00000003002	-	94	61.809	ENSPNAG00000028765	-	87	64.855	Pygocentrus_nattereri
ENSAMXG00000003002	-	91	66.897	ENSPNAG00000008653	-	97	66.897	Pygocentrus_nattereri
ENSAMXG00000003002	-	95	60.535	ENSPNAG00000012366	-	90	60.535	Pygocentrus_nattereri
ENSAMXG00000003002	-	93	69.886	ENSPNAG00000016045	-	71	69.886	Pygocentrus_nattereri
ENSAMXG00000003002	-	93	62.403	ENSPNAG00000024704	-	91	62.403	Pygocentrus_nattereri
ENSAMXG00000003002	-	91	68.050	ENSPNAG00000007072	-	94	68.050	Pygocentrus_nattereri
ENSAMXG00000003002	-	98	58.633	ENSPNAG00000000783	-	92	58.633	Pygocentrus_nattereri
ENSAMXG00000003002	-	98	66.052	ENSPNAG00000003919	-	98	66.052	Pygocentrus_nattereri
ENSAMXG00000003002	-	93	65.351	ENSPNAG00000012138	-	98	65.351	Pygocentrus_nattereri
ENSAMXG00000003002	-	97	52.453	ENSUAMG00000027384	-	90	52.453	Ursus_americanus
ENSAMXG00000003002	-	97	51.174	ENSUAMG00000027415	-	89	51.174	Ursus_americanus
ENSAMXG00000003002	-	96	56.296	ENSVPAG00000002698	-	99	56.296	Vicugna_pacos