EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000003101 (Gene tree)
Gene ID: 103044921
Gene Symbol: -
Alias: fa12h12|sfrs6a|wu:fa12h12|wu:fa13e06|zgc:63770
Full Name: serine/arginine-rich splicing factor 6-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 8724 bases
Position: chr15:810242-818965
Accession: 103044921
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000003171	RRM_1	PF00076.22	2.4e-31	1	2
ENSAMXP00000003171	RRM_1	PF00076.22	2.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000003171	-	1131	XM_022676779	ENSAMXP00000003171	376 (aa)	XP_022532500	W5K6G0

Gene Model

Click here to download ENSAMXG00000003101's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG
amex05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000003101's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000003101	-	91	69.591	ENSAMXG00000042692	-	96	85.185

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000003101	-	78	64.505	ENSG00000124193	SRSF6	55	93.243	Homo_sapiens
ENSAMXG00000003101	-	51	67.539	ENSAMEG00000003710	SRSF6	53	68.449	Ailuropoda_melanoleuca
ENSAMXG00000003101	-	60	77.778	ENSACIG00000020091	-	95	80.916	Amphilophus_citrinellus
ENSAMXG00000003101	-	90	64.809	ENSACIG00000023658	-	56	89.674	Amphilophus_citrinellus
ENSAMXG00000003101	-	91	57.895	ENSAOCG00000004309	-	56	84.946	Amphiprion_ocellaris
ENSAMXG00000003101	-	50	84.656	ENSAPEG00000020746	-	65	84.946	Amphiprion_percula
ENSAMXG00000003101	-	50	83.957	ENSATEG00000007255	-	71	80.749	Anabas_testudineus
ENSAMXG00000003101	-	51	85.789	ENSANAG00000024080	SRSF6	55	93.243	Aotus_nancymaae
ENSAMXG00000003101	-	51	84.737	ENSBTAG00000008527	SRSF6	55	91.892	Bos_taurus
ENSAMXG00000003101	-	51	85.789	ENSCJAG00000048403	SRSF6	67	87.634	Callithrix_jacchus
ENSAMXG00000003101	-	51	84.737	ENSCAFG00000009289	SRSF6	55	91.892	Canis_familiaris
ENSAMXG00000003101	-	51	84.737	ENSCAFG00020013559	SRSF6	55	91.892	Canis_lupus_dingo
ENSAMXG00000003101	-	51	83.684	ENSCHIG00000009148	-	53	85.484	Capra_hircus
ENSAMXG00000003101	-	51	84.737	ENSCHIG00000015890	-	55	91.892	Capra_hircus
ENSAMXG00000003101	-	50	80.851	ENSCPOG00000011761	SRSF6	55	93.243	Cavia_porcellus
ENSAMXG00000003101	-	89	60.778	ENSCCAG00000026018	-	55	93.243	Cebus_capucinus
ENSAMXG00000003101	-	51	85.789	ENSCATG00000030794	SRSF6	55	93.243	Cercocebus_atys
ENSAMXG00000003101	-	51	85.789	ENSCLAG00000010247	SRSF6	55	93.243	Chinchilla_lanigera
ENSAMXG00000003101	-	51	85.789	ENSCSAG00000014022	SRSF6	53	87.634	Chlorocebus_sabaeus
ENSAMXG00000003101	-	51	84.737	ENSCANG00000037774	-	53	86.559	Colobus_angolensis_palliatus
ENSAMXG00000003101	-	51	84.737	ENSCGRG00001022339	Srsf6	55	90.541	Cricetulus_griseus_chok1gshd
ENSAMXG00000003101	-	51	85.789	ENSDORG00000028378	Srsf6	55	93.243	Dipodomys_ordii
ENSAMXG00000003101	-	51	82.105	ENSETEG00000006221	SRSF6	52	83.333	Echinops_telfairi
ENSAMXG00000003101	-	51	84.737	ENSEASG00005023429	SRSF6	53	86.559	Equus_asinus_asinus
ENSAMXG00000003101	-	51	84.737	ENSECAG00000023932	SRSF6	56	87.097	Equus_caballus
ENSAMXG00000003101	-	52	83.756	ENSELUG00000013506	SRSF6	84	87.234	Esox_lucius
ENSAMXG00000003101	-	51	84.737	ENSFCAG00000032814	SRSF6	53	86.559	Felis_catus
ENSAMXG00000003101	-	50	86.631	ENSGALG00000000990	SRSF6	55	93.243	Gallus_gallus
ENSAMXG00000003101	-	91	65.634	ENSGACG00000006084	srsf6a	53	89.247	Gasterosteus_aculeatus
ENSAMXG00000003101	-	78	64.505	ENSGGOG00000009808	SRSF6	55	93.243	Gorilla_gorilla
ENSAMXG00000003101	-	90	66.667	ENSHBUG00000006386	-	57	84.946	Haplochromis_burtoni
ENSAMXG00000003101	-	51	85.789	ENSHGLG00000007348	SRSF6	55	93.243	Heterocephalus_glaber_female
ENSAMXG00000003101	-	52	70.051	ENSHGLG00000007701	-	56	68.280	Heterocephalus_glaber_female
ENSAMXG00000003101	-	88	65.465	ENSHCOG00000002740	srsf6a	57	85.484	Hippocampus_comes
ENSAMXG00000003101	-	50	85.106	ENSIPUG00000004776	-	85	82.383	Ictalurus_punctatus
ENSAMXG00000003101	-	98	74.737	ENSIPUG00000016856	SRSF6	81	82.474	Ictalurus_punctatus
ENSAMXG00000003101	-	51	85.789	ENSSTOG00000010866	SRSF6	55	93.243	Ictidomys_tridecemlineatus
ENSAMXG00000003101	-	89	70.238	ENSLBEG00000007356	srsf6a	52	87.166	Labrus_bergylta
ENSAMXG00000003101	-	76	66.026	ENSLACG00000005466	SRSF6	54	87.097	Latimeria_chalumnae
ENSAMXG00000003101	-	51	85.789	ENSMFAG00000036925	SRSF6	55	93.243	Macaca_fascicularis
ENSAMXG00000003101	-	51	85.789	ENSMMUG00000006742	SRSF6	55	93.243	Macaca_mulatta
ENSAMXG00000003101	-	50	86.170	ENSMNEG00000038270	-	53	87.634	Macaca_nemestrina
ENSAMXG00000003101	-	51	85.789	ENSMNEG00000027392	-	55	93.243	Macaca_nemestrina
ENSAMXG00000003101	-	67	59.603	ENSMZEG00005008032	-	56	84.946	Maylandia_zebra
ENSAMXG00000003101	-	51	85.263	ENSMICG00000008537	SRSF6	55	93.243	Microcebus_murinus
ENSAMXG00000003101	-	50	85.638	ENSMODG00000003107	SRSF6	54	87.634	Monodelphis_domestica
ENSAMXG00000003101	-	66	78.571	ENSMALG00000003702	srsf6a	60	79.032	Monopterus_albus
ENSAMXG00000003101	-	51	84.737	MGP_CAROLIEiJ_G0024606	Srsf6	55	90.541	Mus_caroli
ENSAMXG00000003101	-	51	84.737	ENSMUSG00000016921	Srsf6	55	90.541	Mus_musculus
ENSAMXG00000003101	-	51	84.737	MGP_PahariEiJ_G0026050	Srsf6	55	90.541	Mus_pahari
ENSAMXG00000003101	-	51	84.737	MGP_SPRETEiJ_G0025528	Srsf6	55	90.541	Mus_spretus
ENSAMXG00000003101	-	51	84.737	ENSMPUG00000017692	SRSF6	63	86.559	Mustela_putorius_furo
ENSAMXG00000003101	-	51	58.525	ENSMLUG00000016618	SRSF6	53	57.009	Myotis_lucifugus
ENSAMXG00000003101	-	52	83.249	ENSNGAG00000017560	Srsf6	55	93.243	Nannospalax_galili
ENSAMXG00000003101	-	91	63.450	ENSNBRG00000014709	-	57	84.946	Neolamprologus_brichardi
ENSAMXG00000003101	-	78	64.505	ENSNLEG00000006524	SRSF6	55	93.243	Nomascus_leucogenys
ENSAMXG00000003101	-	91	67.335	ENSONIG00000020247	-	53	86.022	Oreochromis_niloticus
ENSAMXG00000003101	-	51	80.526	ENSOARG00000003117	SRSF6	52	80.108	Ovis_aries
ENSAMXG00000003101	-	50	70.213	ENSPPAG00000043131	-	56	70.000	Pan_paniscus
ENSAMXG00000003101	-	51	84.737	ENSPPRG00000008917	SRSF6	53	86.559	Panthera_pardus
ENSAMXG00000003101	-	50	70.213	ENSPTRG00000046274	-	56	70.000	Pan_troglodytes
ENSAMXG00000003101	-	51	85.789	ENSPTRG00000044686	-	55	93.243	Pan_troglodytes
ENSAMXG00000003101	-	51	85.789	ENSPANG00000035224	SRSF6	55	93.243	Papio_anubis
ENSAMXG00000003101	-	65	60.569	ENSPKIG00000015703	-	95	60.784	Paramormyrops_kingsleyae
ENSAMXG00000003101	-	91	75.806	ENSPKIG00000018463	-	76	93.506	Paramormyrops_kingsleyae
ENSAMXG00000003101	-	50	85.638	ENSPCIG00000003820	SRSF6	55	93.243	Phascolarctos_cinereus
ENSAMXG00000003101	-	93	68.056	ENSPLAG00000009243	srsf6a	79	85.827	Poecilia_latipinna
ENSAMXG00000003101	-	51	85.263	ENSPCOG00000026364	SRSF6	55	93.243	Propithecus_coquereli
ENSAMXG00000003101	-	51	85.263	ENSPVAG00000015232	SRSF6	53	86.631	Pteropus_vampyrus
ENSAMXG00000003101	-	90	63.636	ENSPNYG00000004944	-	57	84.946	Pundamilia_nyererei
ENSAMXG00000003101	-	51	84.737	ENSRNOG00000006380	Srsf6	54	86.559	Rattus_norvegicus
ENSAMXG00000003101	-	51	84.211	ENSRBIG00000041414	SRSF6	57	93.243	Rhinopithecus_bieti
ENSAMXG00000003101	-	51	85.789	ENSRROG00000029989	SRSF6	55	93.243	Rhinopithecus_roxellana
ENSAMXG00000003101	-	89	60.778	ENSSBOG00000033708	-	55	93.243	Saimiri_boliviensis_boliviensis
ENSAMXG00000003101	-	50	85.638	ENSSHAG00000012805	SRSF6	54	87.634	Sarcophilus_harrisii
ENSAMXG00000003101	-	67	75.889	ENSSFOG00015015169	SRSF6	81	91.398	Scleropages_formosus
ENSAMXG00000003101	-	97	68.571	ENSSFOG00015019681	-	80	86.528	Scleropages_formosus
ENSAMXG00000003101	-	68	66.148	ENSSMAG00000017447	-	55	80.214	Scophthalmus_maximus
ENSAMXG00000003101	-	91	68.786	ENSSDUG00000016097	srsf6a	53	90.323	Seriola_dumerili
ENSAMXG00000003101	-	73	77.297	ENSSLDG00000022841	srsf6a	53	90.323	Seriola_lalandi_dorsalis
ENSAMXG00000003101	-	68	74.231	ENSSPAG00000002362	srsf6a	88	90.957	Stegastes_partitus
ENSAMXG00000003101	-	51	84.737	ENSSSCG00000007362	SRSF6	60	87.097	Sus_scrofa
ENSAMXG00000003101	-	51	84.737	ENSUAMG00000003559	SRSF6	55	91.892	Ursus_americanus