EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000003350 (Gene tree)
Gene ID: 103034271
Gene Symbol: smarcal1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 12197 bases
Position: chr19:8067985-8080181
Accession: 103034271
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000003415	ResIII	PF04851.15	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000003415	-	2658	XM_007230433	ENSAMXP00000003415	885 (aa)	XP_007230495	W5K754

Gene Model

Click here to download ENSAMXG00000003350's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000003350's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000003350	smarcal1	88	57.987	ENSG00000138375	SMARCAL1	99	65.217	Homo_sapiens
ENSAMXG00000003350	smarcal1	99	66.268	ENSAPOG00000020156	SMARCAL1	99	66.268	Acanthochromis_polyacanthus
ENSAMXG00000003350	smarcal1	93	69.146	ENSACIG00000001500	smarcal1	97	69.146	Amphilophus_citrinellus
ENSAMXG00000003350	smarcal1	96	66.554	ENSAOCG00000014266	SMARCAL1	98	66.667	Amphiprion_ocellaris
ENSAMXG00000003350	smarcal1	99	65.686	ENSAPEG00000015861	SMARCAL1	99	65.795	Amphiprion_percula
ENSAMXG00000003350	smarcal1	99	66.848	ENSATEG00000020624	SMARCAL1	100	66.848	Anabas_testudineus
ENSAMXG00000003350	smarcal1	99	52.965	ENSAPLG00000009864	SMARCAL1	99	53.862	Anas_platyrhynchos
ENSAMXG00000003350	smarcal1	99	65.690	ENSACAG00000004612	SMARCAL1	99	65.690	Anolis_carolinensis
ENSAMXG00000003350	smarcal1	99	66.118	ENSACLG00000015990	SMARCAL1	99	66.556	Astatotilapia_calliptera
ENSAMXG00000003350	smarcal1	90	64.557	ENSCPBG00000013599	SMARCAL1	90	73.684	Chrysemys_picta_bellii
ENSAMXG00000003350	smarcal1	72	49.219	ENSCING00000009308	-	100	48.920	Ciona_intestinalis
ENSAMXG00000003350	smarcal1	97	64.502	ENSCSEG00000010785	SMARCAL1	99	64.759	Cynoglossus_semilaevis
ENSAMXG00000003350	smarcal1	99	64.238	ENSCVAG00000018780	SMARCAL1	100	64.238	Cyprinodon_variegatus
ENSAMXG00000003350	smarcal1	63	56.979	ENSEBUG00000011906	SMARCAL1	99	48.006	Eptatretus_burgeri
ENSAMXG00000003350	smarcal1	99	66.438	ENSELUG00000010440	-	100	66.438	Esox_lucius
ENSAMXG00000003350	smarcal1	99	52.588	ENSFALG00000003981	SMARCAL1	75	62.724	Ficedula_albicollis
ENSAMXG00000003350	smarcal1	99	64.823	ENSFHEG00000008380	SMARCAL1	100	65.338	Fundulus_heteroclitus
ENSAMXG00000003350	smarcal1	56	71.395	ENSGMOG00000010034	smarcal1	97	71.395	Gadus_morhua
ENSAMXG00000003350	smarcal1	85	61.538	ENSGALG00000011475	RPL37A	77	61.538	Gallus_gallus
ENSAMXG00000003350	smarcal1	87	75.701	ENSGACG00000006073	SMARCAL1	100	77.467	Gasterosteus_aculeatus
ENSAMXG00000003350	smarcal1	78	76.316	ENSGAGG00000015660	SMARCAL1	75	76.316	Gopherus_agassizii
ENSAMXG00000003350	smarcal1	99	66.002	ENSHBUG00000002973	smarcal1	99	66.519	Haplochromis_burtoni
ENSAMXG00000003350	smarcal1	95	65.141	ENSHCOG00000017921	smarcal1	98	65.141	Hippocampus_comes
ENSAMXG00000003350	smarcal1	96	64.591	ENSKMAG00000012023	SMARCAL1	99	64.821	Kryptolebias_marmoratus
ENSAMXG00000003350	smarcal1	80	71.627	ENSLBEG00000022915	smarcal1	93	71.627	Labrus_bergylta
ENSAMXG00000003350	smarcal1	90	64.203	ENSLBEG00000003493	smarcal1	100	64.802	Labrus_bergylta
ENSAMXG00000003350	smarcal1	99	53.750	ENSLACG00000010974	SMARCAL1	99	53.597	Latimeria_chalumnae
ENSAMXG00000003350	smarcal1	93	65.765	ENSLOCG00000009637	smarcal1	99	66.118	Lepisosteus_oculatus
ENSAMXG00000003350	smarcal1	96	67.466	ENSMAMG00000000828	SMARCAL1	99	67.466	Mastacembelus_armatus
ENSAMXG00000003350	smarcal1	99	66.009	ENSMZEG00005007660	SMARCAL1	99	66.446	Maylandia_zebra
ENSAMXG00000003350	smarcal1	99	53.879	ENSMGAG00000011658	SMARCAL1	99	53.879	Meleagris_gallopavo
ENSAMXG00000003350	smarcal1	93	62.454	ENSMMOG00000003842	smarcal1	94	62.454	Mola_mola
ENSAMXG00000003350	smarcal1	99	52.228	ENSMODG00000015544	SMARCAL1	99	52.228	Monodelphis_domestica
ENSAMXG00000003350	smarcal1	93	67.643	ENSNBRG00000016273	smarcal1	97	67.643	Neolamprologus_brichardi
ENSAMXG00000003350	smarcal1	93	53.228	ENSMEUG00000004395	SMARCAL1	100	53.681	Notamacropus_eugenii
ENSAMXG00000003350	smarcal1	96	68.018	ENSONIG00000009036	smarcal1	100	77.047	Oreochromis_niloticus
ENSAMXG00000003350	smarcal1	99	65.304	ENSORLG00000016455	SMARCAL1	100	65.304	Oryzias_latipes
ENSAMXG00000003350	smarcal1	99	64.972	ENSORLG00020001610	SMARCAL1	100	64.972	Oryzias_latipes_hni
ENSAMXG00000003350	smarcal1	99	65.083	ENSORLG00015001865	SMARCAL1	100	65.083	Oryzias_latipes_hsok
ENSAMXG00000003350	smarcal1	99	64.350	ENSOMEG00000001845	smarcal1	100	64.350	Oryzias_melastigma
ENSAMXG00000003350	smarcal1	99	63.929	ENSPMGG00000019092	SMARCAL1	100	63.929	Periophthalmus_magnuspinnatus
ENSAMXG00000003350	smarcal1	99	54.087	ENSPCIG00000022514	SMARCAL1	95	55.062	Phascolarctos_cinereus
ENSAMXG00000003350	smarcal1	99	65.449	ENSPFOG00000000560	SMARCAL1	100	65.449	Poecilia_formosa
ENSAMXG00000003350	smarcal1	99	65.449	ENSPMEG00000018146	SMARCAL1	100	65.449	Poecilia_mexicana
ENSAMXG00000003350	smarcal1	53	74.576	ENSPREG00000009591	SMARCAL1	78	79.861	Poecilia_reticulata
ENSAMXG00000003350	smarcal1	100	85.795	ENSPNAG00000014900	smarcal1	95	85.795	Pygocentrus_nattereri
ENSAMXG00000003350	smarcal1	99	51.233	ENSSHAG00000013538	SMARCAL1	99	51.728	Sarcophilus_harrisii
ENSAMXG00000003350	smarcal1	99	64.630	ENSSMAG00000010427	SMARCAL1	100	64.630	Scophthalmus_maximus
ENSAMXG00000003350	smarcal1	97	66.222	ENSSDUG00000017470	SMARCAL1	96	66.444	Seriola_dumerili
ENSAMXG00000003350	smarcal1	99	65.322	ENSSLDG00000007224	SMARCAL1	100	65.431	Seriola_lalandi_dorsalis
ENSAMXG00000003350	smarcal1	81	66.528	ENSSPUG00000015369	SMARCAL1	73	66.528	Sphenodon_punctatus
ENSAMXG00000003350	smarcal1	93	67.558	ENSSPAG00000003742	smarcal1	99	67.966	Stegastes_partitus
ENSAMXG00000003350	smarcal1	77	59.621	ENSSSCG00000035501	SMARCAL1	76	60.058	Sus_scrofa
ENSAMXG00000003350	smarcal1	77	63.877	ENSTGUG00000005079	SMARCAL1	99	63.583	Taeniopygia_guttata
ENSAMXG00000003350	smarcal1	97	58.361	ENSTRUG00000010701	SMARCAL1	98	58.361	Takifugu_rubripes
ENSAMXG00000003350	smarcal1	99	46.146	ENSTTRG00000009001	SMARCAL1	99	45.983	Tursiops_truncatus
ENSAMXG00000003350	smarcal1	99	58.000	ENSXETG00000000465	smarcal1	99	58.000	Xenopus_tropicalis