EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000003410 (Gene tree)
Gene ID: 103034462
Gene Symbol: sf3b3
Alias: ik:tdsubc_2b2|wu:fb81f05|xx:tdsubc_2b2|zgc:55440
Full Name: splicing factor 3b subunit 3
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 26216 bases
Position: chr18:16624501-16650716
Accession: 103034462
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000003480	CPSF_A	PF03178.15	1.1e-99	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000003480	-	5679	XM_007249176	ENSAMXP00000003480	1217 (aa)	XP_007249238	W5K7B9

Gene Model

Click here to download ENSAMXG00000003410's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000003410's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000003410	sf3b3	100	93.180	ENSG00000189091	SF3B3	100	96.774	Homo_sapiens
ENSAMXG00000003410	sf3b3	96	97.182	ENSAPOG00000006172	sf3b3	98	97.182	Acanthochromis_polyacanthus
ENSAMXG00000003410	sf3b3	100	93.033	ENSAMEG00000002187	SF3B3	100	93.033	Ailuropoda_melanoleuca
ENSAMXG00000003410	sf3b3	92	94.643	ENSACIG00000016487	sf3b3	100	94.643	Amphilophus_citrinellus
ENSAMXG00000003410	sf3b3	100	97.206	ENSAOCG00000007158	sf3b3	100	97.206	Amphiprion_ocellaris
ENSAMXG00000003410	sf3b3	100	97.206	ENSAPEG00000022786	sf3b3	100	97.206	Amphiprion_percula
ENSAMXG00000003410	sf3b3	100	97.781	ENSATEG00000013708	sf3b3	100	97.781	Anabas_testudineus
ENSAMXG00000003410	sf3b3	81	93.293	ENSAPLG00000004996	SF3B3	99	93.293	Anas_platyrhynchos
ENSAMXG00000003410	sf3b3	100	93.591	ENSACAG00000001817	SF3B3	100	93.591	Anolis_carolinensis
ENSAMXG00000003410	sf3b3	100	93.180	ENSANAG00000028001	SF3B3	100	93.180	Aotus_nancymaae
ENSAMXG00000003410	sf3b3	96	97.523	ENSACLG00000022555	sf3b3	98	97.523	Astatotilapia_calliptera
ENSAMXG00000003410	sf3b3	100	93.180	ENSBTAG00000010627	SF3B3	100	93.180	Bos_taurus
ENSAMXG00000003410	sf3b3	100	60.178	WBGene00019323	teg-4	100	60.178	Caenorhabditis_elegans
ENSAMXG00000003410	sf3b3	100	93.180	ENSCJAG00000014773	SF3B3	99	93.180	Callithrix_jacchus
ENSAMXG00000003410	sf3b3	100	93.262	ENSCAFG00000020151	SF3B3	100	93.262	Canis_familiaris
ENSAMXG00000003410	sf3b3	100	93.262	ENSCAFG00020020912	SF3B3	100	93.262	Canis_lupus_dingo
ENSAMXG00000003410	sf3b3	100	93.262	ENSCHIG00000019822	SF3B3	100	93.262	Capra_hircus
ENSAMXG00000003410	sf3b3	100	93.180	ENSTSYG00000007910	SF3B3	100	93.180	Carlito_syrichta
ENSAMXG00000003410	sf3b3	84	79.405	ENSCAPG00000001484	SF3B3	92	79.405	Cavia_aperea
ENSAMXG00000003410	sf3b3	100	91.865	ENSCPOG00000000586	SF3B3	100	91.865	Cavia_porcellus
ENSAMXG00000003410	sf3b3	100	93.180	ENSCCAG00000017736	SF3B3	100	93.180	Cebus_capucinus
ENSAMXG00000003410	sf3b3	100	93.180	ENSCATG00000036562	SF3B3	100	93.180	Cercocebus_atys
ENSAMXG00000003410	sf3b3	100	93.180	ENSCLAG00000003921	SF3B3	100	93.180	Chinchilla_lanigera
ENSAMXG00000003410	sf3b3	100	93.180	ENSCSAG00000004371	SF3B3	100	93.180	Chlorocebus_sabaeus
ENSAMXG00000003410	sf3b3	90	89.408	ENSCHOG00000001878	SF3B3	90	89.408	Choloepus_hoffmanni
ENSAMXG00000003410	sf3b3	100	93.016	ENSCPBG00000015853	SF3B3	100	93.016	Chrysemys_picta_bellii
ENSAMXG00000003410	sf3b3	100	79.557	ENSCING00000001342	-	100	79.557	Ciona_intestinalis
ENSAMXG00000003410	sf3b3	99	78.407	ENSCSAVG00000011454	-	100	78.407	Ciona_savignyi
ENSAMXG00000003410	sf3b3	100	89.565	ENSCANG00000042920	SF3B3	100	90.058	Colobus_angolensis_palliatus
ENSAMXG00000003410	sf3b3	100	93.098	ENSCGRG00001015908	Sf3b3	100	93.098	Cricetulus_griseus_chok1gshd
ENSAMXG00000003410	sf3b3	100	93.098	ENSCGRG00000010180	Sf3b3	100	93.098	Cricetulus_griseus_crigri
ENSAMXG00000003410	sf3b3	82	96.008	ENSCSEG00000014192	sf3b3	99	96.008	Cynoglossus_semilaevis
ENSAMXG00000003410	sf3b3	100	97.206	ENSCVAG00000010459	sf3b3	100	97.206	Cyprinodon_variegatus
ENSAMXG00000003410	sf3b3	100	97.535	ENSDARG00000103553	sf3b3	100	97.535	Danio_rerio
ENSAMXG00000003410	sf3b3	85	92.960	ENSDNOG00000043626	SF3B3	100	92.960	Dasypus_novemcinctus
ENSAMXG00000003410	sf3b3	100	93.180	ENSDORG00000014176	Sf3b3	100	93.180	Dipodomys_ordii
ENSAMXG00000003410	sf3b3	100	75.041	FBgn0035162	Sf3b3	100	75.041	Drosophila_melanogaster
ENSAMXG00000003410	sf3b3	84	95.359	ENSETEG00000002729	SF3B3	84	95.359	Echinops_telfairi
ENSAMXG00000003410	sf3b3	100	86.360	ENSEBUG00000006117	sf3b3	100	86.360	Eptatretus_burgeri
ENSAMXG00000003410	sf3b3	100	93.262	ENSEASG00005013376	SF3B3	100	93.262	Equus_asinus_asinus
ENSAMXG00000003410	sf3b3	100	93.262	ENSECAG00000014053	SF3B3	100	93.262	Equus_caballus
ENSAMXG00000003410	sf3b3	93	92.632	ENSEEUG00000015611	SF3B3	93	92.632	Erinaceus_europaeus
ENSAMXG00000003410	sf3b3	100	96.557	ENSELUG00000015417	sf3b3	100	96.557	Esox_lucius
ENSAMXG00000003410	sf3b3	100	93.262	ENSFCAG00000009487	SF3B3	100	93.262	Felis_catus
ENSAMXG00000003410	sf3b3	100	92.933	ENSFALG00000007372	SF3B3	100	92.933	Ficedula_albicollis
ENSAMXG00000003410	sf3b3	100	93.180	ENSFDAG00000002608	SF3B3	100	93.180	Fukomys_damarensis
ENSAMXG00000003410	sf3b3	100	97.617	ENSFHEG00000017824	sf3b3	100	97.617	Fundulus_heteroclitus
ENSAMXG00000003410	sf3b3	100	93.596	ENSGMOG00000008139	sf3b3	100	93.596	Gadus_morhua
ENSAMXG00000003410	sf3b3	100	93.180	ENSGALG00000002531	SF3B3	100	93.180	Gallus_gallus
ENSAMXG00000003410	sf3b3	100	97.288	ENSGAFG00000015206	sf3b3	100	97.288	Gambusia_affinis
ENSAMXG00000003410	sf3b3	100	97.209	ENSGACG00000002646	sf3b3	100	97.209	Gasterosteus_aculeatus
ENSAMXG00000003410	sf3b3	96	93.168	ENSGAGG00000006746	SF3B3	97	93.168	Gopherus_agassizii
ENSAMXG00000003410	sf3b3	100	93.180	ENSGGOG00000003246	SF3B3	100	93.180	Gorilla_gorilla
ENSAMXG00000003410	sf3b3	92	89.643	ENSHBUG00000005960	sf3b3	100	90.625	Haplochromis_burtoni
ENSAMXG00000003410	sf3b3	100	93.180	ENSHGLG00000010135	SF3B3	100	93.180	Heterocephalus_glaber_female
ENSAMXG00000003410	sf3b3	100	91.079	ENSHGLG00100011148	SF3B3	100	91.079	Heterocephalus_glaber_male
ENSAMXG00000003410	sf3b3	100	97.042	ENSHCOG00000011981	sf3b3	100	97.042	Hippocampus_comes
ENSAMXG00000003410	sf3b3	100	98.932	ENSIPUG00000020435	sf3b3	100	98.932	Ictalurus_punctatus
ENSAMXG00000003410	sf3b3	100	93.180	ENSSTOG00000007065	SF3B3	100	93.180	Ictidomys_tridecemlineatus
ENSAMXG00000003410	sf3b3	100	93.180	ENSJJAG00000003948	Sf3b3	100	93.180	Jaculus_jaculus
ENSAMXG00000003410	sf3b3	100	94.988	ENSKMAG00000004066	sf3b3	99	96.926	Kryptolebias_marmoratus
ENSAMXG00000003410	sf3b3	100	97.371	ENSLBEG00000018302	sf3b3	100	97.371	Labrus_bergylta
ENSAMXG00000003410	sf3b3	98	90.449	ENSLACG00000012501	SF3B3	99	90.449	Latimeria_chalumnae
ENSAMXG00000003410	sf3b3	100	97.126	ENSLOCG00000007566	sf3b3	100	97.126	Lepisosteus_oculatus
ENSAMXG00000003410	sf3b3	100	93.262	ENSLAFG00000012219	SF3B3	100	93.262	Loxodonta_africana
ENSAMXG00000003410	sf3b3	100	93.180	ENSMFAG00000045487	SF3B3	100	93.180	Macaca_fascicularis
ENSAMXG00000003410	sf3b3	100	93.180	ENSMMUG00000017812	SF3B3	100	93.180	Macaca_mulatta
ENSAMXG00000003410	sf3b3	100	93.180	ENSMNEG00000033385	SF3B3	100	93.180	Macaca_nemestrina
ENSAMXG00000003410	sf3b3	100	89.647	ENSMLEG00000043891	SF3B3	100	89.647	Mandrillus_leucophaeus
ENSAMXG00000003410	sf3b3	100	97.699	ENSMAMG00000016837	sf3b3	100	97.699	Mastacembelus_armatus
ENSAMXG00000003410	sf3b3	89	94.635	ENSMZEG00005026015	sf3b3	99	94.635	Maylandia_zebra
ENSAMXG00000003410	sf3b3	100	97.617	ENSMZEG00005010836	sf3b3	100	97.617	Maylandia_zebra
ENSAMXG00000003410	sf3b3	100	93.180	ENSMGAG00000001597	SF3B3	100	93.180	Meleagris_gallopavo
ENSAMXG00000003410	sf3b3	81	76.030	ENSMAUG00000013618	Sf3b3	95	76.779	Mesocricetus_auratus
ENSAMXG00000003410	sf3b3	100	92.207	ENSMICG00000001363	SF3B3	100	92.207	Microcebus_murinus
ENSAMXG00000003410	sf3b3	100	93.098	ENSMOCG00000006108	Sf3b3	100	93.098	Microtus_ochrogaster
ENSAMXG00000003410	sf3b3	89	94.542	ENSMMOG00000002598	sf3b3	97	94.542	Mola_mola
ENSAMXG00000003410	sf3b3	100	89.163	ENSMODG00000014363	SF3B3	100	89.163	Monodelphis_domestica
ENSAMXG00000003410	sf3b3	100	97.206	ENSMALG00000008014	sf3b3	100	97.206	Monopterus_albus
ENSAMXG00000003410	sf3b3	100	93.098	MGP_CAROLIEiJ_G0031563	Sf3b3	100	93.098	Mus_caroli
ENSAMXG00000003410	sf3b3	100	93.098	ENSMUSG00000033732	Sf3b3	100	93.098	Mus_musculus
ENSAMXG00000003410	sf3b3	100	93.016	MGP_SPRETEiJ_G0032681	Sf3b3	100	93.016	Mus_spretus
ENSAMXG00000003410	sf3b3	100	93.262	ENSMPUG00000010277	SF3B3	100	93.262	Mustela_putorius_furo
ENSAMXG00000003410	sf3b3	100	93.180	ENSMLUG00000014607	SF3B3	100	93.180	Myotis_lucifugus
ENSAMXG00000003410	sf3b3	100	93.180	ENSNGAG00000021903	Sf3b3	100	93.180	Nannospalax_galili
ENSAMXG00000003410	sf3b3	83	94.444	ENSNBRG00000007197	sf3b3	99	94.444	Neolamprologus_brichardi
ENSAMXG00000003410	sf3b3	100	91.708	ENSNLEG00000016127	SF3B3	100	91.708	Nomascus_leucogenys
ENSAMXG00000003410	sf3b3	92	89.142	ENSMEUG00000004479	SF3B3	94	89.142	Notamacropus_eugenii
ENSAMXG00000003410	sf3b3	98	89.941	ENSOPRG00000009847	SF3B3	100	89.941	Ochotona_princeps
ENSAMXG00000003410	sf3b3	100	93.180	ENSODEG00000014154	SF3B3	100	93.180	Octodon_degus
ENSAMXG00000003410	sf3b3	100	97.699	ENSONIG00000011198	sf3b3	100	97.699	Oreochromis_niloticus
ENSAMXG00000003410	sf3b3	100	93.344	ENSOANG00000001161	-	100	93.344	Ornithorhynchus_anatinus
ENSAMXG00000003410	sf3b3	100	91.208	ENSOCUG00000004139	SF3B3	100	91.208	Oryctolagus_cuniculus
ENSAMXG00000003410	sf3b3	100	96.878	ENSORLG00000013472	sf3b3	100	96.878	Oryzias_latipes
ENSAMXG00000003410	sf3b3	100	96.878	ENSORLG00020017473	sf3b3	100	96.878	Oryzias_latipes_hni
ENSAMXG00000003410	sf3b3	100	97.042	ENSORLG00015007710	sf3b3	100	97.042	Oryzias_latipes_hsok
ENSAMXG00000003410	sf3b3	100	96.713	ENSOMEG00000014483	sf3b3	100	96.713	Oryzias_melastigma
ENSAMXG00000003410	sf3b3	100	92.951	ENSOGAG00000016051	SF3B3	100	92.951	Otolemur_garnettii
ENSAMXG00000003410	sf3b3	100	93.033	ENSOARG00000004816	SF3B3	100	93.033	Ovis_aries
ENSAMXG00000003410	sf3b3	100	93.180	ENSPPAG00000026807	SF3B3	100	93.180	Pan_paniscus
ENSAMXG00000003410	sf3b3	100	93.262	ENSPPRG00000001686	SF3B3	100	93.262	Panthera_pardus
ENSAMXG00000003410	sf3b3	89	90.432	ENSPTIG00000020382	SF3B3	100	90.432	Panthera_tigris_altaica
ENSAMXG00000003410	sf3b3	100	93.180	ENSPTRG00000008308	SF3B3	100	93.180	Pan_troglodytes
ENSAMXG00000003410	sf3b3	100	93.180	ENSPANG00000024075	SF3B3	100	93.180	Papio_anubis
ENSAMXG00000003410	sf3b3	100	97.371	ENSPKIG00000002712	sf3b3	100	97.371	Paramormyrops_kingsleyae
ENSAMXG00000003410	sf3b3	89	93.100	ENSPSIG00000002232	SF3B3	100	93.100	Pelodiscus_sinensis
ENSAMXG00000003410	sf3b3	100	93.098	ENSPEMG00000008603	Sf3b3	100	93.098	Peromyscus_maniculatus_bairdii
ENSAMXG00000003410	sf3b3	100	91.126	ENSPMAG00000001793	sf3b3	100	91.126	Petromyzon_marinus
ENSAMXG00000003410	sf3b3	100	93.344	ENSPCIG00000014927	SF3B3	100	93.344	Phascolarctos_cinereus
ENSAMXG00000003410	sf3b3	100	97.453	ENSPFOG00000015516	sf3b3	100	97.453	Poecilia_formosa
ENSAMXG00000003410	sf3b3	100	97.453	ENSPLAG00000014330	sf3b3	100	97.453	Poecilia_latipinna
ENSAMXG00000003410	sf3b3	100	97.535	ENSPMEG00000019856	sf3b3	100	97.535	Poecilia_mexicana
ENSAMXG00000003410	sf3b3	81	97.561	ENSPREG00000019669	sf3b3	97	97.561	Poecilia_reticulata
ENSAMXG00000003410	sf3b3	95	92.989	ENSPPYG00000007539	SF3B3	100	92.989	Pongo_abelii
ENSAMXG00000003410	sf3b3	100	72.638	ENSPCAG00000002623	SF3B3	100	72.638	Procavia_capensis
ENSAMXG00000003410	sf3b3	84	97.196	ENSPCOG00000026582	SF3B3	100	97.196	Propithecus_coquereli
ENSAMXG00000003410	sf3b3	100	93.180	ENSPVAG00000000684	SF3B3	100	93.180	Pteropus_vampyrus
ENSAMXG00000003410	sf3b3	100	97.535	ENSPNYG00000003528	sf3b3	100	97.535	Pundamilia_nyererei
ENSAMXG00000003410	sf3b3	100	98.521	ENSPNAG00000015419	sf3b3	100	98.521	Pygocentrus_nattereri
ENSAMXG00000003410	sf3b3	100	93.098	ENSRNOG00000017724	Sf3b3	100	93.098	Rattus_norvegicus
ENSAMXG00000003410	sf3b3	100	93.180	ENSRBIG00000021904	SF3B3	100	93.180	Rhinopithecus_bieti
ENSAMXG00000003410	sf3b3	100	93.180	ENSRROG00000045703	SF3B3	100	93.180	Rhinopithecus_roxellana
ENSAMXG00000003410	sf3b3	100	93.180	ENSSBOG00000029156	SF3B3	100	93.180	Saimiri_boliviensis_boliviensis
ENSAMXG00000003410	sf3b3	100	93.344	ENSSHAG00000000372	SF3B3	100	93.344	Sarcophilus_harrisii
ENSAMXG00000003410	sf3b3	100	97.946	ENSSFOG00015012877	sf3b3	100	97.946	Scleropages_formosus
ENSAMXG00000003410	sf3b3	100	96.795	ENSSMAG00000014386	sf3b3	100	96.795	Scophthalmus_maximus
ENSAMXG00000003410	sf3b3	100	97.864	ENSSDUG00000021201	sf3b3	100	97.864	Seriola_dumerili
ENSAMXG00000003410	sf3b3	100	97.781	ENSSLDG00000017532	sf3b3	100	97.781	Seriola_lalandi_dorsalis
ENSAMXG00000003410	sf3b3	93	93.015	ENSSARG00000006917	SF3B3	93	93.015	Sorex_araneus
ENSAMXG00000003410	sf3b3	100	93.098	ENSSPUG00000006253	SF3B3	100	93.098	Sphenodon_punctatus
ENSAMXG00000003410	sf3b3	100	89.565	ENSSPAG00000003125	sf3b3	100	89.565	Stegastes_partitus
ENSAMXG00000003410	sf3b3	100	93.262	ENSSSCG00000025323	SF3B3	100	93.262	Sus_scrofa
ENSAMXG00000003410	sf3b3	100	93.103	ENSTGUG00000006082	SF3B3	100	93.103	Taeniopygia_guttata
ENSAMXG00000003410	sf3b3	89	96.691	ENSTNIG00000004857	sf3b3	100	96.691	Tetraodon_nigroviridis
ENSAMXG00000003410	sf3b3	93	79.137	ENSTBEG00000002946	SF3B3	100	79.137	Tupaia_belangeri
ENSAMXG00000003410	sf3b3	100	92.440	ENSTTRG00000005855	SF3B3	100	92.440	Tursiops_truncatus
ENSAMXG00000003410	sf3b3	100	93.262	ENSUAMG00000006780	SF3B3	100	93.262	Ursus_americanus
ENSAMXG00000003410	sf3b3	100	93.262	ENSUMAG00000017757	SF3B3	100	93.262	Ursus_maritimus
ENSAMXG00000003410	sf3b3	100	78.143	ENSVPAG00000003202	SF3B3	100	78.143	Vicugna_pacos
ENSAMXG00000003410	sf3b3	100	93.344	ENSVVUG00000017922	SF3B3	100	93.344	Vulpes_vulpes
ENSAMXG00000003410	sf3b3	100	93.344	ENSXETG00000032869	SF3B3	100	93.344	Xenopus_tropicalis
ENSAMXG00000003410	sf3b3	77	97.771	ENSXCOG00000013628	sf3b3	97	97.771	Xiphophorus_couchianus
ENSAMXG00000003410	sf3b3	100	97.288	ENSXMAG00000006334	sf3b3	100	97.288	Xiphophorus_maculatus