EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000003474 (Gene tree)
Gene ID: 103031393
Gene Symbol: urb2
Alias: fc13e02|si:dkey-162b3.2|wu:fc13e02
Full Name: URB2 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 10243 bases
Position: chr25:13370358-13380600
Accession: 103031393
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000003542	Urb2	PF10441.9	5.2e-17	1	1
ENSAMXP00000045395	Urb2	PF10441.9	5.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000050962	-	5687	-	ENSAMXP00000045395	1515 (aa)	-	UPI000BBDC511
ENSAMXT00000003542	-	5563	XM_007248550	ENSAMXP00000003542	1515 (aa)	XP_007248612	W5K7I1

Gene Model

Click here to download ENSAMXG00000003474's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000003474's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000003474	urb2	100	36.486	ENSG00000135763	URB2	100	57.647	Homo_sapiens
ENSAMXG00000003474	urb2	89	42.273	ENSAPOG00000000608	urb2	94	42.412	Acanthochromis_polyacanthus
ENSAMXG00000003474	urb2	99	35.858	ENSAMEG00000009206	URB2	99	35.858	Ailuropoda_melanoleuca
ENSAMXG00000003474	urb2	99	42.310	ENSAOCG00000019961	urb2	99	42.430	Amphiprion_ocellaris
ENSAMXG00000003474	urb2	99	42.549	ENSAPEG00000005263	urb2	99	42.669	Amphiprion_percula
ENSAMXG00000003474	urb2	99	41.208	ENSATEG00000020930	urb2	99	41.335	Anabas_testudineus
ENSAMXG00000003474	urb2	97	37.795	ENSAPLG00000002998	URB2	100	37.795	Anas_platyrhynchos
ENSAMXG00000003474	urb2	100	37.619	ENSACAG00000001285	URB2	100	37.540	Anolis_carolinensis
ENSAMXG00000003474	urb2	100	36.534	ENSANAG00000033963	URB2	100	36.534	Aotus_nancymaae
ENSAMXG00000003474	urb2	89	42.222	ENSACLG00000009254	urb2	94	42.292	Astatotilapia_calliptera
ENSAMXG00000003474	urb2	99	35.673	ENSBTAG00000010180	URB2	99	35.673	Bos_taurus
ENSAMXG00000003474	urb2	97	56.338	ENSCJAG00000010968	URB2	100	56.338	Callithrix_jacchus
ENSAMXG00000003474	urb2	100	35.705	ENSCAFG00000012118	URB2	100	35.705	Canis_familiaris
ENSAMXG00000003474	urb2	93	34.578	ENSCAFG00020027217	URB2	99	34.578	Canis_lupus_dingo
ENSAMXG00000003474	urb2	99	35.290	ENSCHIG00000014513	URB2	99	35.290	Capra_hircus
ENSAMXG00000003474	urb2	99	35.946	ENSTSYG00000006924	URB2	99	35.946	Carlito_syrichta
ENSAMXG00000003474	urb2	64	44.012	ENSCPOG00000020777	-	98	44.012	Cavia_porcellus
ENSAMXG00000003474	urb2	100	37.185	ENSCCAG00000023932	URB2	100	37.185	Cebus_capucinus
ENSAMXG00000003474	urb2	100	36.527	ENSCATG00000043366	URB2	100	36.592	Cercocebus_atys
ENSAMXG00000003474	urb2	100	36.129	ENSCLAG00000006268	URB2	100	36.129	Chinchilla_lanigera
ENSAMXG00000003474	urb2	100	36.241	ENSCSAG00000010599	URB2	100	36.305	Chlorocebus_sabaeus
ENSAMXG00000003474	urb2	62	48.624	ENSCHOG00000010163	URB2	64	48.624	Choloepus_hoffmanni
ENSAMXG00000003474	urb2	100	39.848	ENSCPBG00000006191	URB2	100	39.848	Chrysemys_picta_bellii
ENSAMXG00000003474	urb2	100	36.463	ENSCANG00000023711	URB2	100	36.463	Colobus_angolensis_palliatus
ENSAMXG00000003474	urb2	100	36.241	ENSCGRG00001009591	Urb2	100	36.241	Cricetulus_griseus_chok1gshd
ENSAMXG00000003474	urb2	100	36.241	ENSCGRG00000011259	Urb2	100	36.241	Cricetulus_griseus_crigri
ENSAMXG00000003474	urb2	99	38.345	ENSCSEG00000000299	urb2	99	38.540	Cynoglossus_semilaevis
ENSAMXG00000003474	urb2	99	40.590	ENSCVAG00000011011	urb2	99	40.590	Cyprinodon_variegatus
ENSAMXG00000003474	urb2	99	57.677	ENSDARG00000003217	urb2	99	64.530	Danio_rerio
ENSAMXG00000003474	urb2	97	32.803	ENSDNOG00000043064	URB2	99	32.756	Dasypus_novemcinctus
ENSAMXG00000003474	urb2	100	34.693	ENSDORG00000014975	Urb2	100	34.693	Dipodomys_ordii
ENSAMXG00000003474	urb2	95	40.000	ENSETEG00000002869	URB2	95	40.000	Echinops_telfairi
ENSAMXG00000003474	urb2	99	37.170	ENSEASG00005012060	URB2	99	37.170	Equus_asinus_asinus
ENSAMXG00000003474	urb2	91	57.143	ENSECAG00000012338	URB2	99	57.143	Equus_caballus
ENSAMXG00000003474	urb2	92	54.930	ENSEEUG00000002669	URB2	92	54.930	Erinaceus_europaeus
ENSAMXG00000003474	urb2	99	52.205	ENSELUG00000014647	urb2	99	52.205	Esox_lucius
ENSAMXG00000003474	urb2	100	35.874	ENSFCAG00000007662	URB2	100	35.939	Felis_catus
ENSAMXG00000003474	urb2	100	37.628	ENSFALG00000003385	URB2	100	37.628	Ficedula_albicollis
ENSAMXG00000003474	urb2	100	35.710	ENSFDAG00000021079	URB2	100	35.710	Fukomys_damarensis
ENSAMXG00000003474	urb2	99	39.939	ENSFHEG00000010357	urb2	99	39.840	Fundulus_heteroclitus
ENSAMXG00000003474	urb2	99	42.391	ENSGMOG00000012459	urb2	100	42.537	Gadus_morhua
ENSAMXG00000003474	urb2	100	38.800	ENSGALG00000011101	URB2	100	38.800	Gallus_gallus
ENSAMXG00000003474	urb2	99	43.177	ENSGACG00000016179	urb2	99	42.985	Gasterosteus_aculeatus
ENSAMXG00000003474	urb2	100	39.784	ENSGAGG00000021879	URB2	100	39.911	Gopherus_agassizii
ENSAMXG00000003474	urb2	100	36.615	ENSGGOG00000025643	URB2	100	36.615	Gorilla_gorilla
ENSAMXG00000003474	urb2	99	41.881	ENSHBUG00000018469	urb2	99	41.932	Haplochromis_burtoni
ENSAMXG00000003474	urb2	97	35.236	ENSHGLG00000016561	URB2	99	35.236	Heterocephalus_glaber_female
ENSAMXG00000003474	urb2	92	40.216	ENSHGLG00100001838	URB2	100	35.382	Heterocephalus_glaber_male
ENSAMXG00000003474	urb2	99	63.123	ENSIPUG00000020315	urb2	99	63.123	Ictalurus_punctatus
ENSAMXG00000003474	urb2	100	35.419	ENSSTOG00000025323	URB2	100	35.469	Ictidomys_tridecemlineatus
ENSAMXG00000003474	urb2	100	35.982	ENSJJAG00000011998	Urb2	100	35.982	Jaculus_jaculus
ENSAMXG00000003474	urb2	99	39.689	ENSKMAG00000020129	urb2	99	39.809	Kryptolebias_marmoratus
ENSAMXG00000003474	urb2	100	40.857	ENSLACG00000002038	URB2	100	40.970	Latimeria_chalumnae
ENSAMXG00000003474	urb2	100	46.960	ENSLOCG00000015462	urb2	100	46.960	Lepisosteus_oculatus
ENSAMXG00000003474	urb2	99	35.165	ENSLAFG00000012484	URB2	99	35.165	Loxodonta_africana
ENSAMXG00000003474	urb2	100	36.399	ENSMFAG00000039905	URB2	100	36.463	Macaca_fascicularis
ENSAMXG00000003474	urb2	100	36.463	ENSMMUG00000009509	URB2	100	36.527	Macaca_mulatta
ENSAMXG00000003474	urb2	100	36.527	ENSMNEG00000038762	URB2	100	36.592	Macaca_nemestrina
ENSAMXG00000003474	urb2	100	36.592	ENSMLEG00000043252	URB2	100	36.656	Mandrillus_leucophaeus
ENSAMXG00000003474	urb2	99	40.293	ENSMAMG00000020365	urb2	99	40.494	Mastacembelus_armatus
ENSAMXG00000003474	urb2	99	41.992	ENSMZEG00005011027	urb2	99	42.052	Maylandia_zebra
ENSAMXG00000003474	urb2	94	36.714	ENSMGAG00000012073	URB2	100	36.714	Meleagris_gallopavo
ENSAMXG00000003474	urb2	96	53.846	ENSMAUG00000017980	Urb2	100	53.846	Mesocricetus_auratus
ENSAMXG00000003474	urb2	99	36.106	ENSMICG00000033302	URB2	99	36.141	Microcebus_murinus
ENSAMXG00000003474	urb2	100	35.783	ENSMOCG00000020369	Urb2	100	35.673	Microtus_ochrogaster
ENSAMXG00000003474	urb2	99	41.839	ENSMALG00000006529	urb2	99	41.839	Monopterus_albus
ENSAMXG00000003474	urb2	100	35.449	ENSMUSG00000031976	Urb2	100	35.623	Mus_musculus
ENSAMXG00000003474	urb2	100	36.217	ENSMPUG00000012438	URB2	100	36.217	Mustela_putorius_furo
ENSAMXG00000003474	urb2	100	36.067	ENSNGAG00000016524	Urb2	100	36.358	Nannospalax_galili
ENSAMXG00000003474	urb2	100	36.710	ENSNLEG00000014450	URB2	100	36.710	Nomascus_leucogenys
ENSAMXG00000003474	urb2	88	40.000	ENSMEUG00000016434	URB2	91	40.000	Notamacropus_eugenii
ENSAMXG00000003474	urb2	92	37.394	ENSOPRG00000009906	URB2	91	37.394	Ochotona_princeps
ENSAMXG00000003474	urb2	100	36.223	ENSODEG00000005593	URB2	100	36.352	Octodon_degus
ENSAMXG00000003474	urb2	99	43.565	ENSONIG00000017078	urb2	99	43.806	Oreochromis_niloticus
ENSAMXG00000003474	urb2	100	33.138	ENSOANG00000013732	URB2	100	33.268	Ornithorhynchus_anatinus
ENSAMXG00000003474	urb2	99	36.028	ENSOCUG00000010700	URB2	99	36.028	Oryctolagus_cuniculus
ENSAMXG00000003474	urb2	99	39.915	ENSORLG00000010915	urb2	99	40.158	Oryzias_latipes
ENSAMXG00000003474	urb2	99	40.328	ENSORLG00020003361	urb2	99	40.524	Oryzias_latipes_hni
ENSAMXG00000003474	urb2	99	40.621	ENSORLG00015001534	urb2	99	40.693	Oryzias_latipes_hsok
ENSAMXG00000003474	urb2	99	39.466	ENSOMEG00000010076	urb2	99	39.744	Oryzias_melastigma
ENSAMXG00000003474	urb2	99	35.733	ENSOGAG00000003021	URB2	99	35.733	Otolemur_garnettii
ENSAMXG00000003474	urb2	99	35.378	ENSOARG00000003102	URB2	99	35.355	Ovis_aries
ENSAMXG00000003474	urb2	100	36.422	ENSPPAG00000040629	URB2	100	36.422	Pan_paniscus
ENSAMXG00000003474	urb2	100	35.746	ENSPPRG00000012767	URB2	100	35.810	Panthera_pardus
ENSAMXG00000003474	urb2	95	56.061	ENSPTIG00000012577	URB2	100	56.061	Panthera_tigris_altaica
ENSAMXG00000003474	urb2	100	36.486	ENSPTRG00000002092	URB2	100	36.486	Pan_troglodytes
ENSAMXG00000003474	urb2	100	35.930	ENSPANG00000002245	URB2	100	35.995	Papio_anubis
ENSAMXG00000003474	urb2	100	48.903	ENSPKIG00000005787	urb2	100	48.968	Paramormyrops_kingsleyae
ENSAMXG00000003474	urb2	100	39.444	ENSPSIG00000002690	URB2	100	39.444	Pelodiscus_sinensis
ENSAMXG00000003474	urb2	96	34.765	ENSPEMG00000019551	Urb2	100	34.765	Peromyscus_maniculatus_bairdii
ENSAMXG00000003474	urb2	100	36.808	ENSPCIG00000030071	URB2	100	36.873	Phascolarctos_cinereus
ENSAMXG00000003474	urb2	99	40.522	ENSPFOG00000014330	urb2	99	40.331	Poecilia_formosa
ENSAMXG00000003474	urb2	99	39.753	ENSPLAG00000014654	urb2	99	39.480	Poecilia_latipinna
ENSAMXG00000003474	urb2	99	39.665	ENSPMEG00000012356	urb2	99	39.479	Poecilia_mexicana
ENSAMXG00000003474	urb2	99	39.368	ENSPREG00000010268	urb2	99	39.082	Poecilia_reticulata
ENSAMXG00000003474	urb2	99	36.211	ENSPPYG00000000123	URB2	99	36.211	Pongo_abelii
ENSAMXG00000003474	urb2	99	36.609	ENSPCOG00000023537	URB2	99	36.744	Propithecus_coquereli
ENSAMXG00000003474	urb2	100	32.581	ENSPVAG00000002108	URB2	100	32.540	Pteropus_vampyrus
ENSAMXG00000003474	urb2	89	42.431	ENSPNYG00000016840	urb2	94	42.500	Pundamilia_nyererei
ENSAMXG00000003474	urb2	100	70.809	ENSPNAG00000013684	urb2	100	70.809	Pygocentrus_nattereri
ENSAMXG00000003474	urb2	100	35.677	ENSRNOG00000026853	Urb2	97	35.677	Rattus_norvegicus
ENSAMXG00000003474	urb2	100	36.697	ENSRBIG00000037937	URB2	100	36.697	Rhinopithecus_bieti
ENSAMXG00000003474	urb2	100	36.632	ENSRROG00000039854	URB2	100	36.632	Rhinopithecus_roxellana
ENSAMXG00000003474	urb2	100	36.446	ENSSBOG00000023055	URB2	100	36.446	Saimiri_boliviensis_boliviensis
ENSAMXG00000003474	urb2	100	37.139	ENSSHAG00000014735	URB2	100	37.203	Sarcophilus_harrisii
ENSAMXG00000003474	urb2	98	48.385	ENSSFOG00015015432	urb2	99	48.385	Scleropages_formosus
ENSAMXG00000003474	urb2	89	40.365	ENSSMAG00000004984	urb2	95	40.365	Scophthalmus_maximus
ENSAMXG00000003474	urb2	99	41.453	ENSSDUG00000000902	urb2	99	41.444	Seriola_dumerili
ENSAMXG00000003474	urb2	100	39.252	ENSSPUG00000018549	URB2	100	39.442	Sphenodon_punctatus
ENSAMXG00000003474	urb2	99	41.712	ENSSPAG00000013632	urb2	99	41.872	Stegastes_partitus
ENSAMXG00000003474	urb2	99	36.109	ENSSSCG00000010186	URB2	99	36.109	Sus_scrofa
ENSAMXG00000003474	urb2	100	38.347	ENSTGUG00000009990	URB2	100	38.249	Taeniopygia_guttata
ENSAMXG00000003474	urb2	99	39.809	ENSTRUG00000008173	urb2	99	39.809	Takifugu_rubripes
ENSAMXG00000003474	urb2	99	41.736	ENSTNIG00000017689	urb2	99	41.779	Tetraodon_nigroviridis
ENSAMXG00000003474	urb2	99	33.052	ENSTTRG00000014864	URB2	99	33.052	Tursiops_truncatus
ENSAMXG00000003474	urb2	99	36.052	ENSUAMG00000015022	URB2	99	36.052	Ursus_americanus
ENSAMXG00000003474	urb2	99	36.047	ENSUMAG00000004728	URB2	99	36.047	Ursus_maritimus
ENSAMXG00000003474	urb2	52	57.857	ENSVPAG00000001750	-	51	57.857	Vicugna_pacos
ENSAMXG00000003474	urb2	100	36.023	ENSVVUG00000006747	URB2	100	36.023	Vulpes_vulpes
ENSAMXG00000003474	urb2	100	35.577	ENSXETG00000023331	urb2	100	35.577	Xenopus_tropicalis
ENSAMXG00000003474	urb2	99	40.074	ENSXMAG00000015059	urb2	99	39.888	Xiphophorus_maculatus