EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000003504 (Gene tree)
Gene ID: 103035006
Gene Symbol: rab20
Alias: fb01f02|wu:fb01f02|wu:fj82g08|zgc:64047
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 4908 bases
Position: chr19:29345843-29350750
Accession: 103035006
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000003577	MMR_HSR1	PF01926.23	1.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000003577	-	741	XM_007227930	ENSAMXP00000003577	246 (aa)	XP_007227992	W5K7L6

Gene Model

Click here to download ENSAMXG00000003504's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000003504's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000003504	rab20	52	35.338	ENSAMXG00000029712	rab25b	63	35.338
ENSAMXG00000003504	rab20	52	36.090	ENSAMXG00000009640	rab14	61	36.090
ENSAMXG00000003504	rab20	52	32.331	ENSAMXG00000033216	rab41	68	32.331
ENSAMXG00000003504	rab20	50	35.659	ENSAMXG00000037267	-	61	35.659
ENSAMXG00000003504	rab20	57	32.639	ENSAMXG00000009935	rab30	57	32.867
ENSAMXG00000003504	rab20	52	36.567	ENSAMXG00000040879	rab25a	62	36.567
ENSAMXG00000003504	rab20	56	34.965	ENSAMXG00000003155	rab11a	66	34.965
ENSAMXG00000003504	rab20	52	37.226	ENSAMXG00000032027	rab7a	66	37.226
ENSAMXG00000003504	rab20	52	38.686	ENSAMXG00000002254	-	66	38.686
ENSAMXG00000003504	rab20	52	31.343	ENSAMXG00000003717	rab39bb	62	31.343
ENSAMXG00000003504	rab20	51	34.058	ENSAMXG00000032663	si:dkey-13a21.4	61	34.848
ENSAMXG00000003504	rab20	52	36.765	ENSAMXG00000025889	RAB9A	67	36.765
ENSAMXG00000003504	rab20	52	33.333	ENSAMXG00000036772	rab2a	62	33.333
ENSAMXG00000003504	rab20	52	30.370	ENSAMXG00000033069	si:cabz01085950.1	65	30.370
ENSAMXG00000003504	rab20	57	34.722	ENSAMXG00000037623	-	65	34.965
ENSAMXG00000003504	rab20	54	32.143	ENSAMXG00000033470	RAB15	64	32.143
ENSAMXG00000003504	rab20	57	34.722	ENSAMXG00000042655	rab11bb	65	34.965
ENSAMXG00000003504	rab20	50	35.878	ENSAMXG00000026059	RAB9A	65	35.878
ENSAMXG00000003504	rab20	50	35.659	ENSAMXG00000043717	rab5c	58	35.659
ENSAMXG00000003504	rab20	52	37.956	ENSAMXG00000031957	zgc:100918	67	37.956
ENSAMXG00000003504	rab20	63	30.000	ENSAMXG00000030712	rab13	65	34.586
ENSAMXG00000003504	rab20	76	30.102	ENSAMXG00000032547	rab6a	59	33.083
ENSAMXG00000003504	rab20	54	34.043	ENSAMXG00000043951	rab15	66	34.043
ENSAMXG00000003504	rab20	50	35.659	ENSAMXG00000040460	zgc:101559	53	35.659
ENSAMXG00000003504	rab20	52	35.075	ENSAMXG00000039486	zgc:171927	63	35.075
ENSAMXG00000003504	rab20	52	33.582	ENSAMXG00000024632	rab11al	60	35.772
ENSAMXG00000003504	rab20	66	30.178	ENSAMXG00000004630	rab6ba	70	31.579
ENSAMXG00000003504	rab20	52	32.090	ENSAMXG00000041657	rab39ba	62	31.343
ENSAMXG00000003504	rab20	52	34.586	ENSAMXG00000004882	rab12	52	34.615

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000003504	rab20	99	68.217	ENSATEG00000011117	rab20	100	67.442	Anabas_testudineus
ENSAMXG00000003504	rab20	100	60.569	ENSAPLG00000011744	RAB20	100	60.569	Anas_platyrhynchos
ENSAMXG00000003504	rab20	99	58.943	ENSACAG00000014045	RAB20	99	59.259	Anolis_carolinensis
ENSAMXG00000003504	rab20	99	61.475	ENSCPBG00000005866	RAB20	99	61.066	Chrysemys_picta_bellii
ENSAMXG00000003504	rab20	99	68.293	ENSCSEG00000011160	rab20	99	68.293	Cynoglossus_semilaevis
ENSAMXG00000003504	rab20	99	75.918	ENSDARG00000005049	rab20	97	74.390	Danio_rerio
ENSAMXG00000003504	rab20	99	69.531	ENSELUG00000004092	rab20	98	69.531	Esox_lucius
ENSAMXG00000003504	rab20	100	59.274	ENSFALG00000004409	RAB20	100	59.274	Ficedula_albicollis
ENSAMXG00000003504	rab20	99	67.200	ENSGACG00000003527	rab20	100	67.200	Gasterosteus_aculeatus
ENSAMXG00000003504	rab20	99	64.822	ENSHCOG00000013468	rab20	98	65.625	Hippocampus_comes
ENSAMXG00000003504	rab20	100	73.790	ENSIPUG00000018288	RAB20	97	74.194	Ictalurus_punctatus
ENSAMXG00000003504	rab20	100	73.790	ENSIPUG00000000432	RAB20	97	74.194	Ictalurus_punctatus
ENSAMXG00000003504	rab20	99	62.295	ENSLACG00000011001	RAB20	99	61.885	Latimeria_chalumnae
ENSAMXG00000003504	rab20	99	67.954	ENSMAMG00000015214	rab20	98	67.692	Mastacembelus_armatus
ENSAMXG00000003504	rab20	99	67.742	ENSMMOG00000020022	rab20	100	67.460	Mola_mola
ENSAMXG00000003504	rab20	99	57.085	ENSMEUG00000009442	RAB20	99	57.085	Notamacropus_eugenii
ENSAMXG00000003504	rab20	87	48.198	ENSPMAG00000004439	rab20	98	48.649	Petromyzon_marinus
ENSAMXG00000003504	rab20	100	79.757	ENSPNAG00000008867	rab20	100	80.894	Pygocentrus_nattereri
ENSAMXG00000003504	rab20	99	67.188	ENSSMAG00000018818	rab20	100	66.409	Scophthalmus_maximus
ENSAMXG00000003504	rab20	99	69.380	ENSSDUG00000005148	rab20	98	68.217	Seriola_dumerili
ENSAMXG00000003504	rab20	100	60.163	ENSTGUG00000008797	RAB20	100	60.324	Taeniopygia_guttata
ENSAMXG00000003504	rab20	99	67.704	ENSTRUG00000022951	rab20	98	66.537	Takifugu_rubripes
ENSAMXG00000003504	rab20	94	69.099	ENSTNIG00000013920	rab20	100	66.935	Tetraodon_nigroviridis