EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000003536 (Gene tree)
Gene ID: 103025331
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 77894 bases
Position: chrAPWO02000034.1:4865328-4943221
Accession: 103025331
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000033821	R3H	PF01424.22	1.2e-12	1	1
ENSAMXP00000050982	R3H	PF01424.22	1.4e-12	1	1
ENSAMXP00000003613	R3H	PF01424.22	1.4e-12	1	1
ENSAMXP00000045328	R3H	PF01424.22	1.5e-12	1	1
ENSAMXP00000037609	R3H	PF01424.22	1.6e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000003613	-	6142	-	ENSAMXP00000003613	1127 (aa)	-	W5K7Q2
ENSAMXT00000039179	-	6509	XM_007257067	ENSAMXP00000045328	1140 (aa)	XP_007257129	UPI000BBDA90C
ENSAMXT00000046584	-	6425	XM_007257069	ENSAMXP00000037609	1112 (aa)	XP_007257131	UPI000BBD6D9E
ENSAMXT00000052204	-	6371	XM_007257071	ENSAMXP00000050982	1094 (aa)	XP_007257133	UPI000BBDB625
ENSAMXT00000045208	-	6227	XM_007257072	ENSAMXP00000033821	1046 (aa)	XP_007257134	UPI000BBDAA71

Gene Model

Click here to download ENSAMXG00000003536's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000003536's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000003536	r3hdm1	100	67.689	ENSAMXG00000012861	R3HDM1	91	80.000
ENSAMXG00000003536	r3hdm1	51	55.285	ENSAMXG00000020587	arpp21	83	55.285
ENSAMXG00000003536	r3hdm1	92	43.257	ENSAMXG00000017180	r3hdm2	91	55.856

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000003536	r3hdm1	89	74.603	ENSG00000048991	R3HDM1	97	81.159	Homo_sapiens
ENSAMXG00000003536	r3hdm1	85	66.929	ENSAPOG00000020850	r3hdm1	84	71.835	Acanthochromis_polyacanthus
ENSAMXG00000003536	r3hdm1	100	55.238	ENSAMEG00000014886	R3HDM1	93	62.731	Ailuropoda_melanoleuca
ENSAMXG00000003536	r3hdm1	84	66.929	ENSAOCG00000005192	r3hdm1	88	65.729	Amphiprion_ocellaris
ENSAMXG00000003536	r3hdm1	77	73.841	ENSAPEG00000016108	r3hdm1	84	72.115	Amphiprion_percula
ENSAMXG00000003536	r3hdm1	78	71.473	ENSATEG00000000232	r3hdm1	88	69.909	Anabas_testudineus
ENSAMXG00000003536	r3hdm1	94	71.350	ENSAPLG00000015231	R3HDM1	88	71.429	Anas_platyrhynchos
ENSAMXG00000003536	r3hdm1	100	62.558	ENSACAG00000001676	R3HDM1	93	62.645	Anolis_carolinensis
ENSAMXG00000003536	r3hdm1	100	55.854	ENSANAG00000035334	R3HDM1	88	74.684	Aotus_nancymaae
ENSAMXG00000003536	r3hdm1	89	49.664	ENSACLG00000027282	r3hdm1	83	71.203	Astatotilapia_calliptera
ENSAMXG00000003536	r3hdm1	100	61.772	ENSBTAG00000013302	R3HDM1	100	55.527	Bos_taurus
ENSAMXG00000003536	r3hdm1	100	55.951	ENSCJAG00000011718	R3HDM1	100	55.913	Callithrix_jacchus
ENSAMXG00000003536	r3hdm1	100	62.791	ENSCAFG00000005075	R3HDM1	93	62.731	Canis_familiaris
ENSAMXG00000003536	r3hdm1	100	62.791	ENSCAFG00020016119	R3HDM1	93	62.731	Canis_lupus_dingo
ENSAMXG00000003536	r3hdm1	100	62.005	ENSCHIG00000020851	R3HDM1	100	56.049	Capra_hircus
ENSAMXG00000003536	r3hdm1	100	59.441	ENSCPOG00000012784	R3HDM1	100	53.250	Cavia_porcellus
ENSAMXG00000003536	r3hdm1	91	72.861	ENSCCAG00000027199	R3HDM1	88	74.367	Cebus_capucinus
ENSAMXG00000003536	r3hdm1	89	74.921	ENSCATG00000023642	R3HDM1	88	75.000	Cercocebus_atys
ENSAMXG00000003536	r3hdm1	91	72.271	ENSCLAG00000007962	R3HDM1	88	70.914	Chinchilla_lanigera
ENSAMXG00000003536	r3hdm1	100	63.023	ENSCSAG00000016356	R3HDM1	93	63.109	Chlorocebus_sabaeus
ENSAMXG00000003536	r3hdm1	76	75.758	ENSCHOG00000013638	R3HDM1	81	64.234	Choloepus_hoffmanni
ENSAMXG00000003536	r3hdm1	85	78.229	ENSCPBG00000009645	R3HDM1	99	78.229	Chrysemys_picta_bellii
ENSAMXG00000003536	r3hdm1	100	62.704	ENSCANG00000034748	R3HDM1	86	71.965	Colobus_angolensis_palliatus
ENSAMXG00000003536	r3hdm1	99	62.326	ENSCGRG00001012357	R3hdm1	90	62.413	Cricetulus_griseus_chok1gshd
ENSAMXG00000003536	r3hdm1	100	62.326	ENSCGRG00000012080	R3hdm1	100	61.935	Cricetulus_griseus_crigri
ENSAMXG00000003536	r3hdm1	82	68.079	ENSCSEG00000008944	r3hdm1	87	69.350	Cynoglossus_semilaevis
ENSAMXG00000003536	r3hdm1	77	74.503	ENSCVAG00000007582	r3hdm1	86	72.756	Cyprinodon_variegatus
ENSAMXG00000003536	r3hdm1	53	54.015	ENSDARG00000061081	arpp21	92	46.027	Danio_rerio
ENSAMXG00000003536	r3hdm1	100	59.861	ENSDNOG00000000771	R3HDM1	100	53.913	Dasypus_novemcinctus
ENSAMXG00000003536	r3hdm1	84	71.176	ENSETEG00000013606	R3HDM1	82	72.159	Echinops_telfairi
ENSAMXG00000003536	r3hdm1	59	40.374	ENSEBUG00000014746	arpp21	95	40.916	Eptatretus_burgeri
ENSAMXG00000003536	r3hdm1	91	72.861	ENSEASG00005007392	R3HDM1	87	74.286	Equus_asinus_asinus
ENSAMXG00000003536	r3hdm1	92	72.334	ENSECAG00000019114	R3HDM1	88	72.414	Equus_caballus
ENSAMXG00000003536	r3hdm1	79	58.980	ENSEEUG00000012589	R3HDM1	73	53.704	Erinaceus_europaeus
ENSAMXG00000003536	r3hdm1	89	57.156	ENSELUG00000014413	r3hdm1	87	83.824	Esox_lucius
ENSAMXG00000003536	r3hdm1	92	69.186	ENSELUG00000004909	R3HDM1	90	70.145	Esox_lucius
ENSAMXG00000003536	r3hdm1	89	74.603	ENSFCAG00000027113	R3HDM1	88	74.684	Felis_catus
ENSAMXG00000003536	r3hdm1	75	56.106	ENSFALG00000013731	R3HDM1	86	61.860	Ficedula_albicollis
ENSAMXG00000003536	r3hdm1	100	62.093	ENSFDAG00000016478	R3HDM1	88	71.191	Fukomys_damarensis
ENSAMXG00000003536	r3hdm1	83	68.365	ENSFHEG00000018713	r3hdm1	88	69.890	Fundulus_heteroclitus
ENSAMXG00000003536	r3hdm1	62	69.099	ENSGMOG00000006042	-	82	64.815	Gadus_morhua
ENSAMXG00000003536	r3hdm1	85	71.290	ENSGALG00000012246	R3HDM1	99	71.197	Gallus_gallus
ENSAMXG00000003536	r3hdm1	77	74.257	ENSGAFG00000006203	r3hdm1	86	72.524	Gambusia_affinis
ENSAMXG00000003536	r3hdm1	85	69.741	ENSGACG00000014925	r3hdm1	96	68.347	Gasterosteus_aculeatus
ENSAMXG00000003536	r3hdm1	94	68.449	ENSGAGG00000007840	R3HDM1	100	56.080	Gopherus_agassizii
ENSAMXG00000003536	r3hdm1	89	74.603	ENSGGOG00000008156	R3HDM1	88	74.684	Gorilla_gorilla
ENSAMXG00000003536	r3hdm1	91	73.156	ENSHGLG00000015718	R3HDM1	88	71.745	Heterocephalus_glaber_female
ENSAMXG00000003536	r3hdm1	91	44.918	ENSHGLG00100015374	-	94	46.400	Heterocephalus_glaber_male
ENSAMXG00000003536	r3hdm1	100	63.023	ENSHGLG00100003184	-	83	73.171	Heterocephalus_glaber_male
ENSAMXG00000003536	r3hdm1	77	69.935	ENSHCOG00000013366	r3hdm1	87	69.304	Hippocampus_comes
ENSAMXG00000003536	r3hdm1	99	73.973	ENSIPUG00000013629	r3hdm1	99	79.310	Ictalurus_punctatus
ENSAMXG00000003536	r3hdm1	89	59.372	ENSIPUG00000001676	R3HDM1	94	76.232	Ictalurus_punctatus
ENSAMXG00000003536	r3hdm1	56	39.655	ENSIPUG00000020552	arpp21	84	44.025	Ictalurus_punctatus
ENSAMXG00000003536	r3hdm1	100	62.558	ENSSTOG00000007572	R3HDM1	100	61.613	Ictidomys_tridecemlineatus
ENSAMXG00000003536	r3hdm1	93	71.989	ENSLACG00000005334	R3HDM1	92	72.269	Latimeria_chalumnae
ENSAMXG00000003536	r3hdm1	94	71.774	ENSLOCG00000001641	r3hdm1	89	71.850	Lepisosteus_oculatus
ENSAMXG00000003536	r3hdm1	100	62.238	ENSLAFG00000009065	R3HDM1	99	58.702	Loxodonta_africana
ENSAMXG00000003536	r3hdm1	89	74.603	ENSMFAG00000030331	R3HDM1	88	74.684	Macaca_fascicularis
ENSAMXG00000003536	r3hdm1	89	74.603	ENSMMUG00000009844	R3HDM1	88	74.684	Macaca_mulatta
ENSAMXG00000003536	r3hdm1	89	74.603	ENSMNEG00000027793	R3HDM1	88	74.684	Macaca_nemestrina
ENSAMXG00000003536	r3hdm1	89	74.603	ENSMLEG00000043189	R3HDM1	88	74.684	Mandrillus_leucophaeus
ENSAMXG00000003536	r3hdm1	81	70.774	ENSMAMG00000004532	r3hdm1	87	71.296	Mastacembelus_armatus
ENSAMXG00000003536	r3hdm1	81	70.170	ENSMZEG00005003157	r3hdm1	84	71.203	Maylandia_zebra
ENSAMXG00000003536	r3hdm1	99	62.118	ENSMGAG00000012461	R3HDM1	88	70.604	Meleagris_gallopavo
ENSAMXG00000003536	r3hdm1	100	62.558	ENSMAUG00000010315	R3hdm1	100	61.935	Mesocricetus_auratus
ENSAMXG00000003536	r3hdm1	91	73.156	ENSMICG00000005900	-	88	74.684	Microcebus_murinus
ENSAMXG00000003536	r3hdm1	84	56.771	ENSMICG00000042655	-	94	57.096	Microcebus_murinus
ENSAMXG00000003536	r3hdm1	90	61.048	ENSMODG00000000923	R3HDM1	90	60.222	Monodelphis_domestica
ENSAMXG00000003536	r3hdm1	95	67.109	ENSMALG00000009000	r3hdm1	90	67.109	Monopterus_albus
ENSAMXG00000003536	r3hdm1	100	62.704	MGP_CAROLIEiJ_G0014543	R3hdm1	100	61.935	Mus_caroli
ENSAMXG00000003536	r3hdm1	100	62.704	ENSMUSG00000056211	R3hdm1	100	61.935	Mus_musculus
ENSAMXG00000003536	r3hdm1	100	62.704	MGP_PahariEiJ_G0027779	R3hdm1	100	61.935	Mus_pahari
ENSAMXG00000003536	r3hdm1	100	62.704	MGP_SPRETEiJ_G0015350	R3hdm1	100	61.935	Mus_spretus
ENSAMXG00000003536	r3hdm1	100	62.791	ENSMPUG00000002412	R3HDM1	93	62.731	Mustela_putorius_furo
ENSAMXG00000003536	r3hdm1	100	55.393	ENSMLUG00000013824	R3HDM1	93	62.791	Myotis_lucifugus
ENSAMXG00000003536	r3hdm1	89	74.603	ENSNLEG00000008622	R3HDM1	88	74.684	Nomascus_leucogenys
ENSAMXG00000003536	r3hdm1	90	47.255	ENSMEUG00000011784	R3HDM1	90	58.447	Notamacropus_eugenii
ENSAMXG00000003536	r3hdm1	94	56.567	ENSODEG00000008607	R3HDM1	83	72.358	Octodon_degus
ENSAMXG00000003536	r3hdm1	92	50.317	ENSONIG00000012017	r3hdm1	99	49.552	Oreochromis_niloticus
ENSAMXG00000003536	r3hdm1	91	71.598	ENSOANG00000007987	R3HDM1	87	70.278	Ornithorhynchus_anatinus
ENSAMXG00000003536	r3hdm1	89	61.663	ENSOCUG00000017366	R3HDM1	98	55.534	Oryctolagus_cuniculus
ENSAMXG00000003536	r3hdm1	81	68.497	ENSORLG00000004297	r3hdm1	87	70.382	Oryzias_latipes
ENSAMXG00000003536	r3hdm1	82	68.169	ENSORLG00015017355	r3hdm1	85	70.382	Oryzias_latipes_hsok
ENSAMXG00000003536	r3hdm1	100	62.558	ENSOGAG00000003136	R3HDM1	93	62.645	Otolemur_garnettii
ENSAMXG00000003536	r3hdm1	100	62.005	ENSOARG00000010788	R3HDM1	100	56.098	Ovis_aries
ENSAMXG00000003536	r3hdm1	89	74.603	ENSPPAG00000027858	R3HDM1	88	74.684	Pan_paniscus
ENSAMXG00000003536	r3hdm1	100	55.517	ENSPPRG00000002626	R3HDM1	88	74.367	Panthera_pardus
ENSAMXG00000003536	r3hdm1	100	55.343	ENSPTIG00000016581	R3HDM1	100	55.035	Panthera_tigris_altaica
ENSAMXG00000003536	r3hdm1	89	74.603	ENSPTRG00000012494	R3HDM1	88	74.684	Pan_troglodytes
ENSAMXG00000003536	r3hdm1	89	74.603	ENSPANG00000026448	R3HDM1	88	74.684	Papio_anubis
ENSAMXG00000003536	r3hdm1	93	76.945	ENSPKIG00000004328	r3hdm1	91	79.153	Paramormyrops_kingsleyae
ENSAMXG00000003536	r3hdm1	94	69.189	ENSPSIG00000012915	R3HDM1	88	69.272	Pelodiscus_sinensis
ENSAMXG00000003536	r3hdm1	100	62.326	ENSPEMG00000015187	R3hdm1	100	61.613	Peromyscus_maniculatus_bairdii
ENSAMXG00000003536	r3hdm1	87	44.109	ENSPMAG00000003369	-	99	44.211	Petromyzon_marinus
ENSAMXG00000003536	r3hdm1	92	71.758	ENSPCIG00000002491	R3HDM1	88	71.779	Phascolarctos_cinereus
ENSAMXG00000003536	r3hdm1	81	68.802	ENSPFOG00000015036	r3hdm1	87	67.480	Poecilia_formosa
ENSAMXG00000003536	r3hdm1	77	73.510	ENSPLAG00000018042	r3hdm1	86	71.795	Poecilia_latipinna
ENSAMXG00000003536	r3hdm1	77	73.510	ENSPMEG00000023947	r3hdm1	86	71.795	Poecilia_mexicana
ENSAMXG00000003536	r3hdm1	77	73.597	ENSPREG00000007902	r3hdm1	86	71.885	Poecilia_reticulata
ENSAMXG00000003536	r3hdm1	100	60.789	ENSPPYG00000012815	R3HDM1	100	55.247	Pongo_abelii
ENSAMXG00000003536	r3hdm1	84	70.881	ENSPCAG00000006208	R3HDM1	74	73.305	Procavia_capensis
ENSAMXG00000003536	r3hdm1	85	78.467	ENSPCOG00000012698	R3HDM1	86	78.545	Propithecus_coquereli
ENSAMXG00000003536	r3hdm1	100	56.512	ENSPVAG00000006098	R3HDM1	100	49.697	Pteropus_vampyrus
ENSAMXG00000003536	r3hdm1	85	76.471	ENSPNAG00000005436	R3HDM1	99	62.579	Pygocentrus_nattereri
ENSAMXG00000003536	r3hdm1	51	56.000	ENSPNAG00000004162	arpp21	89	46.797	Pygocentrus_nattereri
ENSAMXG00000003536	r3hdm1	100	90.330	ENSPNAG00000013952	r3hdm1	100	88.973	Pygocentrus_nattereri
ENSAMXG00000003536	r3hdm1	100	62.704	ENSRNOG00000004099	R3hdm1	93	62.791	Rattus_norvegicus
ENSAMXG00000003536	r3hdm1	77	78.598	ENSRBIG00000033317	R3HDM1	91	78.676	Rhinopithecus_bieti
ENSAMXG00000003536	r3hdm1	82	74.204	ENSRROG00000034534	R3HDM1	88	74.286	Rhinopithecus_roxellana
ENSAMXG00000003536	r3hdm1	89	74.603	ENSSBOG00000020389	R3HDM1	88	74.684	Saimiri_boliviensis_boliviensis
ENSAMXG00000003536	r3hdm1	100	63.023	ENSSHAG00000016999	R3HDM1	88	71.779	Sarcophilus_harrisii
ENSAMXG00000003536	r3hdm1	100	57.332	ENSSFOG00015019851	-	99	59.908	Scleropages_formosus
ENSAMXG00000003536	r3hdm1	93	78.963	ENSSFOG00015014134	r3hdm1	94	79.412	Scleropages_formosus
ENSAMXG00000003536	r3hdm1	87	73.179	ENSSMAG00000001669	r3hdm1	87	71.474	Scophthalmus_maximus
ENSAMXG00000003536	r3hdm1	83	50.836	ENSSDUG00000010749	r3hdm1	98	50.294	Seriola_dumerili
ENSAMXG00000003536	r3hdm1	94	49.215	ENSSLDG00000004499	r3hdm1	94	50.821	Seriola_lalandi_dorsalis
ENSAMXG00000003536	r3hdm1	69	53.125	ENSSARG00000000352	-	64	53.125	Sorex_araneus
ENSAMXG00000003536	r3hdm1	100	62.877	ENSSPUG00000004167	R3HDM1	100	56.059	Sphenodon_punctatus
ENSAMXG00000003536	r3hdm1	90	49.679	ENSSPAG00000004648	r3hdm1	98	51.553	Stegastes_partitus
ENSAMXG00000003536	r3hdm1	92	72.046	ENSSSCG00000015692	R3HDM1	88	74.051	Sus_scrofa
ENSAMXG00000003536	r3hdm1	100	61.772	ENSTGUG00000011750	R3HDM1	100	54.802	Taeniopygia_guttata
ENSAMXG00000003536	r3hdm1	77	71.382	ENSTRUG00000011654	r3hdm1	85	70.382	Takifugu_rubripes
ENSAMXG00000003536	r3hdm1	85	49.082	ENSTNIG00000010362	r3hdm1	98	48.624	Tetraodon_nigroviridis
ENSAMXG00000003536	r3hdm1	89	74.441	ENSTTRG00000003935	R3HDM1	83	74.522	Tursiops_truncatus
ENSAMXG00000003536	r3hdm1	71	54.453	ENSUAMG00000024806	R3HDM1	94	58.791	Ursus_americanus
ENSAMXG00000003536	r3hdm1	100	53.480	ENSUMAG00000005552	R3HDM1	87	74.603	Ursus_maritimus
ENSAMXG00000003536	r3hdm1	85	74.453	ENSVPAG00000007333	R3HDM1	80	74.545	Vicugna_pacos
ENSAMXG00000003536	r3hdm1	89	74.522	ENSVVUG00000006457	R3HDM1	87	74.603	Vulpes_vulpes
ENSAMXG00000003536	r3hdm1	90	53.366	ENSXETG00000019330	r3hdm1	99	52.521	Xenopus_tropicalis
ENSAMXG00000003536	r3hdm1	60	73.443	ENSXCOG00000017448	r3hdm1	81	71.746	Xiphophorus_couchianus
ENSAMXG00000003536	r3hdm1	83	67.546	ENSXMAG00000007885	r3hdm1	88	68.108	Xiphophorus_maculatus