EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000003630 (Gene tree)
Gene ID: 103041155
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 13072 bases
Position: chr16:38984757-38997828
Accession: 103041155
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000003704	KH_1	PF00013.29	4.7e-06	1	1
ENSAMXP00000003704	zf-CCHC	PF00098.23	0.00042	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000003704	-	4393	XM_022678546	ENSAMXP00000003704	746 (aa)	XP_022534267	W5K7Z3

Gene Model

Click here to download ENSAMXG00000003630's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000003630's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000003630	sf1	62	84.937	ENSAPOG00000012341	sf1	69	85.201	Acanthochromis_polyacanthus
ENSAMXG00000003630	sf1	86	86.778	ENSAOCG00000010934	sf1	97	87.253	Amphiprion_ocellaris
ENSAMXG00000003630	sf1	86	86.778	ENSAPEG00000009498	sf1	97	87.253	Amphiprion_percula
ENSAMXG00000003630	sf1	59	84.211	ENSATEG00000001894	sf1	69	84.958	Anabas_testudineus
ENSAMXG00000003630	sf1	76	65.410	ENSANAG00000022607	-	89	75.668	Aotus_nancymaae
ENSAMXG00000003630	sf1	53	80.732	ENSANAG00000026664	-	88	85.829	Aotus_nancymaae
ENSAMXG00000003630	sf1	59	84.821	ENSACLG00000007633	sf1	70	84.735	Astatotilapia_calliptera
ENSAMXG00000003630	sf1	50	79.218	ENSBTAG00000001035	SF1	61	86.096	Bos_taurus
ENSAMXG00000003630	sf1	50	79.218	ENSCJAG00000002780	SF1	75	70.428	Callithrix_jacchus
ENSAMXG00000003630	sf1	50	79.218	ENSCAFG00000014239	SF1	58	86.096	Canis_familiaris
ENSAMXG00000003630	sf1	50	79.218	ENSCAFG00020014381	SF1	58	86.096	Canis_lupus_dingo
ENSAMXG00000003630	sf1	50	79.218	ENSCHIG00000025867	SF1	67	86.096	Capra_hircus
ENSAMXG00000003630	sf1	50	77.724	ENSCAPG00000010762	SF1	66	86.096	Cavia_aperea
ENSAMXG00000003630	sf1	50	77.724	ENSCPOG00000012290	SF1	69	86.096	Cavia_porcellus
ENSAMXG00000003630	sf1	53	80.488	ENSCCAG00000037881	SF1	88	85.829	Cebus_capucinus
ENSAMXG00000003630	sf1	53	72.953	ENSCCAG00000023781	-	82	74.599	Cebus_capucinus
ENSAMXG00000003630	sf1	50	82.723	ENSCATG00000011564	SF1	88	85.829	Cercocebus_atys
ENSAMXG00000003630	sf1	50	79.218	ENSCSAG00000007258	SF1	67	86.096	Chlorocebus_sabaeus
ENSAMXG00000003630	sf1	53	56.338	ENSCING00000005564	-	92	55.202	Ciona_intestinalis
ENSAMXG00000003630	sf1	50	79.218	ENSCANG00000042201	SF1	88	85.829	Colobus_angolensis_palliatus
ENSAMXG00000003630	sf1	50	79.462	ENSCGRG00001003677	Sf1	64	86.096	Cricetulus_griseus_chok1gshd
ENSAMXG00000003630	sf1	50	79.462	ENSCGRG00000001708	Sf1	68	86.096	Cricetulus_griseus_crigri
ENSAMXG00000003630	sf1	86	84.299	ENSCSEG00000014375	sf1	67	83.830	Cynoglossus_semilaevis
ENSAMXG00000003630	sf1	59	82.857	ENSCVAG00000001670	sf1	68	82.969	Cyprinodon_variegatus
ENSAMXG00000003630	sf1	61	89.394	ENSDARG00000008188	sf1	66	94.164	Danio_rerio
ENSAMXG00000003630	sf1	50	79.462	ENSDNOG00000001282	SF1	67	86.364	Dasypus_novemcinctus
ENSAMXG00000003630	sf1	50	79.218	ENSDORG00000016334	Sf1	58	86.096	Dipodomys_ordii
ENSAMXG00000003630	sf1	50	73.153	ENSETEG00000012830	SF1	51	77.748	Echinops_telfairi
ENSAMXG00000003630	sf1	89	47.537	ENSEBUG00000012728	sf1	62	57.204	Eptatretus_burgeri
ENSAMXG00000003630	sf1	50	78.729	ENSEASG00005018272	SF1	67	85.561	Equus_asinus_asinus
ENSAMXG00000003630	sf1	50	78.973	ENSECAG00000024544	SF1	67	85.829	Equus_caballus
ENSAMXG00000003630	sf1	63	81.224	ENSELUG00000013225	sf1	60	84.632	Esox_lucius
ENSAMXG00000003630	sf1	50	79.218	ENSFCAG00000012231	SF1	75	71.765	Felis_catus
ENSAMXG00000003630	sf1	50	79.218	ENSFDAG00000009833	SF1	66	86.096	Fukomys_damarensis
ENSAMXG00000003630	sf1	59	83.188	ENSFHEG00000022656	sf1	68	83.696	Fundulus_heteroclitus
ENSAMXG00000003630	sf1	64	76.827	ENSGMOG00000007469	sf1	60	92.121	Gadus_morhua
ENSAMXG00000003630	sf1	79	83.333	ENSGAFG00000019284	sf1	70	87.733	Gambusia_affinis
ENSAMXG00000003630	sf1	55	85.817	ENSGAGG00000021691	SF1	70	74.008	Gopherus_agassizii
ENSAMXG00000003630	sf1	59	83.589	ENSHBUG00000011598	sf1	67	83.878	Haplochromis_burtoni
ENSAMXG00000003630	sf1	50	79.218	ENSHGLG00000009541	SF1	64	86.096	Heterocephalus_glaber_female
ENSAMXG00000003630	sf1	50	73.086	ENSHGLG00100008255	-	71	80.912	Heterocephalus_glaber_male
ENSAMXG00000003630	sf1	50	79.218	ENSHGLG00100013879	-	66	86.096	Heterocephalus_glaber_male
ENSAMXG00000003630	sf1	61	82.692	ENSHCOG00000011388	sf1	68	83.516	Hippocampus_comes
ENSAMXG00000003630	sf1	50	79.218	ENSSTOG00000009790	-	59	86.096	Ictidomys_tridecemlineatus
ENSAMXG00000003630	sf1	56	72.196	ENSSTOG00000024353	-	68	74.479	Ictidomys_tridecemlineatus
ENSAMXG00000003630	sf1	50	79.462	ENSJJAG00000011788	Sf1	58	86.364	Jaculus_jaculus
ENSAMXG00000003630	sf1	61	80.932	ENSKMAG00000005854	sf1	72	82.166	Kryptolebias_marmoratus
ENSAMXG00000003630	sf1	76	83.514	ENSLBEG00000019836	sf1	74	83.544	Labrus_bergylta
ENSAMXG00000003630	sf1	53	81.592	ENSLACG00000018493	SF1	67	83.424	Latimeria_chalumnae
ENSAMXG00000003630	sf1	60	83.084	ENSLOCG00000002130	sf1	75	84.647	Lepisosteus_oculatus
ENSAMXG00000003630	sf1	50	80.392	ENSLAFG00000007201	SF1	62	86.059	Loxodonta_africana
ENSAMXG00000003630	sf1	50	82.723	ENSMFAG00000033122	SF1	88	85.829	Macaca_fascicularis
ENSAMXG00000003630	sf1	50	82.723	ENSMMUG00000022606	SF1	90	86.096	Macaca_mulatta
ENSAMXG00000003630	sf1	50	82.723	ENSMNEG00000037901	SF1	88	85.829	Macaca_nemestrina
ENSAMXG00000003630	sf1	50	82.723	ENSMLEG00000040706	SF1	89	85.829	Mandrillus_leucophaeus
ENSAMXG00000003630	sf1	86	84.604	ENSMAMG00000001780	sf1	97	84.604	Mastacembelus_armatus
ENSAMXG00000003630	sf1	59	83.589	ENSMZEG00005009196	sf1	67	83.878	Maylandia_zebra
ENSAMXG00000003630	sf1	50	79.462	ENSMAUG00000014064	Sf1	64	86.096	Mesocricetus_auratus
ENSAMXG00000003630	sf1	50	82.507	ENSMICG00000001202	SF1	88	85.600	Microcebus_murinus
ENSAMXG00000003630	sf1	50	79.462	ENSMOCG00000022038	Sf1	64	86.096	Microtus_ochrogaster
ENSAMXG00000003630	sf1	76	82.168	ENSMMOG00000020474	sf1	73	83.984	Mola_mola
ENSAMXG00000003630	sf1	53	79.567	ENSMODG00000029407	SF1	83	85.604	Monodelphis_domestica
ENSAMXG00000003630	sf1	74	81.574	ENSMALG00000020521	sf1	80	83.573	Monopterus_albus
ENSAMXG00000003630	sf1	50	79.462	MGP_CAROLIEiJ_G0022607	Sf1	99	96.617	Mus_caroli
ENSAMXG00000003630	sf1	50	79.462	ENSMUSG00000024949	Sf1	99	96.617	Mus_musculus
ENSAMXG00000003630	sf1	50	79.462	MGP_PahariEiJ_G0014101	Sf1	99	96.617	Mus_pahari
ENSAMXG00000003630	sf1	50	79.462	MGP_SPRETEiJ_G0023518	Sf1	99	96.617	Mus_spretus
ENSAMXG00000003630	sf1	50	79.218	ENSMPUG00000012684	SF1	58	86.096	Mustela_putorius_furo
ENSAMXG00000003630	sf1	56	77.701	ENSMLUG00000029800	-	63	82.667	Myotis_lucifugus
ENSAMXG00000003630	sf1	50	79.462	ENSMLUG00000015217	-	58	86.364	Myotis_lucifugus
ENSAMXG00000003630	sf1	50	79.462	ENSNGAG00000005550	Sf1	64	86.364	Nannospalax_galili
ENSAMXG00000003630	sf1	66	79.150	ENSNBRG00000017606	sf1	72	83.755	Neolamprologus_brichardi
ENSAMXG00000003630	sf1	50	79.218	ENSNLEG00000005236	-	88	85.829	Nomascus_leucogenys
ENSAMXG00000003630	sf1	52	79.369	ENSMEUG00000013424	SF1	72	85.233	Notamacropus_eugenii
ENSAMXG00000003630	sf1	59	83.370	ENSONIG00000015728	sf1	67	83.660	Oreochromis_niloticus
ENSAMXG00000003630	sf1	50	77.724	ENSOCUG00000026486	SF1	58	86.096	Oryctolagus_cuniculus
ENSAMXG00000003630	sf1	61	83.262	ENSORLG00000011853	sf1	67	84.106	Oryzias_latipes
ENSAMXG00000003630	sf1	61	83.047	ENSORLG00020011834	sf1	67	83.736	Oryzias_latipes_hni
ENSAMXG00000003630	sf1	60	83.480	ENSORLG00015012855	sf1	68	82.479	Oryzias_latipes_hsok
ENSAMXG00000003630	sf1	61	83.333	ENSOMEG00000005210	sf1	69	83.333	Oryzias_melastigma
ENSAMXG00000003630	sf1	50	79.218	ENSOGAG00000016196	SF1	58	86.096	Otolemur_garnettii
ENSAMXG00000003630	sf1	50	79.218	ENSOARG00000009166	SF1	64	86.096	Ovis_aries
ENSAMXG00000003630	sf1	53	80.488	ENSPPAG00000002799	-	90	85.829	Pan_paniscus
ENSAMXG00000003630	sf1	50	79.218	ENSPPRG00000013566	SF1	58	86.981	Panthera_pardus
ENSAMXG00000003630	sf1	50	79.218	ENSPTIG00000016141	SF1	69	83.979	Panthera_tigris_altaica
ENSAMXG00000003630	sf1	54	80.668	ENSPTRG00000003846	SF1	88	85.829	Pan_troglodytes
ENSAMXG00000003630	sf1	50	82.723	ENSPANG00000020754	SF1	88	85.829	Papio_anubis
ENSAMXG00000003630	sf1	50	79.462	ENSPEMG00000010463	Sf1	64	86.096	Peromyscus_maniculatus_bairdii
ENSAMXG00000003630	sf1	53	81.022	ENSPCIG00000018173	SF1	62	85.128	Phascolarctos_cinereus
ENSAMXG00000003630	sf1	86	84.323	ENSPFOG00000013683	sf1	61	91.758	Poecilia_formosa
ENSAMXG00000003630	sf1	80	84.779	ENSPLAG00000018076	sf1	63	84.223	Poecilia_latipinna
ENSAMXG00000003630	sf1	86	84.323	ENSPMEG00000005726	sf1	68	83.843	Poecilia_mexicana
ENSAMXG00000003630	sf1	86	84.475	ENSPREG00000004155	sf1	68	83.624	Poecilia_reticulata
ENSAMXG00000003630	sf1	50	79.218	ENSPPYG00000003098	-	70	86.096	Pongo_abelii
ENSAMXG00000003630	sf1	56	69.684	ENSPCAG00000013631	SF1	75	70.841	Procavia_capensis
ENSAMXG00000003630	sf1	50	82.507	ENSPCOG00000027546	SF1	88	85.600	Propithecus_coquereli
ENSAMXG00000003630	sf1	51	79.036	ENSPVAG00000016938	SF1	75	71.598	Pteropus_vampyrus
ENSAMXG00000003630	sf1	59	84.026	ENSPNYG00000004673	sf1	67	83.878	Pundamilia_nyererei
ENSAMXG00000003630	sf1	86	93.798	ENSPNAG00000013072	sf1	97	93.798	Pygocentrus_nattereri
ENSAMXG00000003630	sf1	50	79.462	ENSRNOG00000021085	Sf1	61	85.484	Rattus_norvegicus
ENSAMXG00000003630	sf1	50	79.462	ENSRBIG00000042818	SF1	88	85.829	Rhinopithecus_bieti
ENSAMXG00000003630	sf1	50	79.703	ENSRROG00000045655	SF1	89	85.829	Rhinopithecus_roxellana
ENSAMXG00000003630	sf1	72	65.271	ENSSBOG00000022267	-	85	74.785	Saimiri_boliviensis_boliviensis
ENSAMXG00000003630	sf1	63	74.580	ENSSHAG00000006841	SF1	71	86.684	Sarcophilus_harrisii
ENSAMXG00000003630	sf1	62	83.579	ENSSFOG00015021978	sf1	68	83.298	Scleropages_formosus
ENSAMXG00000003630	sf1	75	82.788	ENSSMAG00000007549	sf1	71	83.731	Scophthalmus_maximus
ENSAMXG00000003630	sf1	59	82.969	ENSSDUG00000003903	sf1	72	84.388	Seriola_dumerili
ENSAMXG00000003630	sf1	50	74.817	ENSSARG00000008180	SF1	71	81.283	Sorex_araneus
ENSAMXG00000003630	sf1	53	81.690	ENSSPUG00000012907	SF1	59	89.296	Sphenodon_punctatus
ENSAMXG00000003630	sf1	62	84.486	ENSSPAG00000019060	sf1	69	84.567	Stegastes_partitus
ENSAMXG00000003630	sf1	50	79.462	ENSSSCG00000013021	SF1	67	86.364	Sus_scrofa
ENSAMXG00000003630	sf1	65	69.524	ENSTNIG00000004820	sf1	72	75.194	Tetraodon_nigroviridis
ENSAMXG00000003630	sf1	50	72.372	ENSTBEG00000013133	SF1	67	78.400	Tupaia_belangeri
ENSAMXG00000003630	sf1	53	75.669	ENSTTRG00000008857	SF1	68	80.481	Tursiops_truncatus
ENSAMXG00000003630	sf1	50	81.841	ENSUMAG00000007268	SF1	72	83.763	Ursus_maritimus
ENSAMXG00000003630	sf1	50	79.218	ENSVVUG00000028585	SF1	67	86.096	Vulpes_vulpes
ENSAMXG00000003630	sf1	76	73.875	ENSXETG00000008434	sf1	62	89.296	Xenopus_tropicalis
ENSAMXG00000003630	sf1	86	84.323	ENSXMAG00000007822	sf1	70	83.843	Xiphophorus_maculatus