EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000003657 (Gene tree)
Gene ID: -
Gene Symbol: tomm20a
Alias: arid4b|ch1073-321c8.1|wu:fk47b11
Full Name: AT-rich interaction domain 4B
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 22552 bases
Position: chr25:45309674-45332225
Accession: 103029446
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000048952	Tudor-knot	PF11717.8	1.9e-10	1	1
ENSAMXP00000003731	Tudor-knot	PF11717.8	9.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000057604	-	3336	-	ENSAMXP00000048952	1111 (aa)	-	-
ENSAMXT00000003731	-	3399	XM_022684780	ENSAMXP00000003731	1133 (aa)	XP_022540501	W5K820

Gene Model

Click here to download ENSAMXG00000003657's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000003657's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000003657	tomm20a	54	58.462	ENSAMXG00000000379	arid4a	50	57.746

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000003657	tomm20a	86	67.952	ENSG00000054267	ARID4B	72	96.429	Homo_sapiens
ENSAMXG00000003657	tomm20a	91	77.240	ENSAPOG00000010823	tomm20a	83	77.966	Acanthochromis_polyacanthus
ENSAMXG00000003657	tomm20a	86	67.554	ENSAMEG00000008801	ARID4B	72	89.333	Ailuropoda_melanoleuca
ENSAMXG00000003657	tomm20a	92	76.601	ENSACIG00000006313	tomm20a	95	74.299	Amphilophus_citrinellus
ENSAMXG00000003657	tomm20a	91	76.998	ENSAOCG00000003330	tomm20a	83	77.724	Amphiprion_ocellaris
ENSAMXG00000003657	tomm20a	91	76.998	ENSAPEG00000024018	tomm20a	83	77.724	Amphiprion_percula
ENSAMXG00000003657	tomm20a	95	64.544	ENSATEG00000014930	tomm20a	92	64.544	Anabas_testudineus
ENSAMXG00000003657	tomm20a	86	66.827	ENSAPLG00000004422	ARID4B	76	65.144	Anas_platyrhynchos
ENSAMXG00000003657	tomm20a	86	68.382	ENSACAG00000001289	ARID4B	71	90.667	Anolis_carolinensis
ENSAMXG00000003657	tomm20a	86	67.470	ENSANAG00000038088	ARID4B	72	89.333	Aotus_nancymaae
ENSAMXG00000003657	tomm20a	96	63.124	ENSACLG00000023521	tomm20a	94	66.832	Astatotilapia_calliptera
ENSAMXG00000003657	tomm20a	86	67.952	ENSBTAG00000000222	ARID4B	75	74.766	Bos_taurus
ENSAMXG00000003657	tomm20a	86	67.711	ENSCJAG00000018055	ARID4B	72	89.333	Callithrix_jacchus
ENSAMXG00000003657	tomm20a	86	67.229	ENSCAFG00000011439	ARID4B	72	89.333	Canis_familiaris
ENSAMXG00000003657	tomm20a	85	66.830	ENSCAFG00020027130	ARID4B	72	89.333	Canis_lupus_dingo
ENSAMXG00000003657	tomm20a	90	69.554	ENSCHIG00000020742	ARID4B	71	89.333	Capra_hircus
ENSAMXG00000003657	tomm20a	87	66.432	ENSTSYG00000010028	ARID4B	74	82.022	Carlito_syrichta
ENSAMXG00000003657	tomm20a	86	67.476	ENSCPOG00000034766	ARID4B	71	89.333	Cavia_porcellus
ENSAMXG00000003657	tomm20a	86	67.711	ENSCCAG00000021520	ARID4B	72	89.333	Cebus_capucinus
ENSAMXG00000003657	tomm20a	86	67.952	ENSCATG00000042166	ARID4B	72	89.333	Cercocebus_atys
ENSAMXG00000003657	tomm20a	86	67.229	ENSCLAG00000003255	ARID4B	72	89.333	Chinchilla_lanigera
ENSAMXG00000003657	tomm20a	86	67.952	ENSCSAG00000010069	ARID4B	72	89.333	Chlorocebus_sabaeus
ENSAMXG00000003657	tomm20a	61	93.651	ENSCHOG00000001152	ARID4B	53	93.651	Choloepus_hoffmanni
ENSAMXG00000003657	tomm20a	86	72.750	ENSCPBG00000004501	ARID4B	87	69.697	Chrysemys_picta_bellii
ENSAMXG00000003657	tomm20a	86	66.667	ENSCANG00000027498	ARID4B	66	89.333	Colobus_angolensis_palliatus
ENSAMXG00000003657	tomm20a	86	67.229	ENSCGRG00001014397	Arid4b	72	89.333	Cricetulus_griseus_chok1gshd
ENSAMXG00000003657	tomm20a	85	67.718	ENSCGRG00000004910	Arid4b	72	89.333	Cricetulus_griseus_crigri
ENSAMXG00000003657	tomm20a	91	75.604	ENSCSEG00000012928	tomm20a	80	92.135	Cynoglossus_semilaevis
ENSAMXG00000003657	tomm20a	90	76.145	ENSCVAG00000003244	tomm20a	83	76.998	Cyprinodon_variegatus
ENSAMXG00000003657	tomm20a	92	76.082	ENSDARG00000090656	tomm20a	95	62.510	Danio_rerio
ENSAMXG00000003657	tomm20a	50	58.993	ENSDNOG00000005711	ARID4B	71	88.571	Dasypus_novemcinctus
ENSAMXG00000003657	tomm20a	95	78.421	ENSDORG00000006422	Arid4b	72	89.333	Dipodomys_ordii
ENSAMXG00000003657	tomm20a	82	62.676	ENSETEG00000005596	ARID4B	86	57.219	Echinops_telfairi
ENSAMXG00000003657	tomm20a	86	67.718	ENSEASG00005000677	ARID4B	72	89.333	Equus_asinus_asinus
ENSAMXG00000003657	tomm20a	86	67.718	ENSECAG00000017836	ARID4B	71	89.333	Equus_caballus
ENSAMXG00000003657	tomm20a	72	48.905	ENSELUG00000018441	tomm20a	52	88.000	Esox_lucius
ENSAMXG00000003657	tomm20a	86	67.229	ENSFCAG00000030096	ARID4B	72	89.333	Felis_catus
ENSAMXG00000003657	tomm20a	86	69.100	ENSFALG00000013548	ARID4B	70	89.333	Ficedula_albicollis
ENSAMXG00000003657	tomm20a	86	67.476	ENSFDAG00000014194	ARID4B	71	89.333	Fukomys_damarensis
ENSAMXG00000003657	tomm20a	91	76.303	ENSFHEG00000003798	tomm20a	83	77.240	Fundulus_heteroclitus
ENSAMXG00000003657	tomm20a	76	79.268	ENSGMOG00000018747	tomm20a	81	80.000	Gadus_morhua
ENSAMXG00000003657	tomm20a	96	64.535	ENSGACG00000004298	tomm20a	91	63.319	Gasterosteus_aculeatus
ENSAMXG00000003657	tomm20a	90	70.909	ENSGAGG00000020544	ARID4B	84	71.688	Gopherus_agassizii
ENSAMXG00000003657	tomm20a	86	67.952	ENSGGOG00000022080	ARID4B	72	89.333	Gorilla_gorilla
ENSAMXG00000003657	tomm20a	91	77.240	ENSHBUG00000020369	tomm20a	83	77.482	Haplochromis_burtoni
ENSAMXG00000003657	tomm20a	90	65.854	ENSHGLG00000012546	ARID4B	71	89.333	Heterocephalus_glaber_female
ENSAMXG00000003657	tomm20a	90	65.854	ENSHGLG00100015436	ARID4B	71	89.333	Heterocephalus_glaber_male
ENSAMXG00000003657	tomm20a	95	64.945	ENSHCOG00000010376	tomm20a	75	93.258	Hippocampus_comes
ENSAMXG00000003657	tomm20a	97	71.084	ENSIPUG00000014234	arid4b	96	66.883	Ictalurus_punctatus
ENSAMXG00000003657	tomm20a	90	66.341	ENSSTOG00000002810	ARID4B	72	89.333	Ictidomys_tridecemlineatus
ENSAMXG00000003657	tomm20a	86	67.470	ENSJJAG00000021368	Arid4b	75	70.093	Jaculus_jaculus
ENSAMXG00000003657	tomm20a	93	76.776	ENSKMAG00000010987	tomm20a	86	84.541	Kryptolebias_marmoratus
ENSAMXG00000003657	tomm20a	95	72.596	ENSLOCG00000015899	tomm20a	91	82.990	Lepisosteus_oculatus
ENSAMXG00000003657	tomm20a	86	67.961	ENSLAFG00000014295	ARID4B	72	89.333	Loxodonta_africana
ENSAMXG00000003657	tomm20a	86	67.952	ENSMFAG00000044016	ARID4B	72	89.333	Macaca_fascicularis
ENSAMXG00000003657	tomm20a	86	67.952	ENSMMUG00000007141	ARID4B	72	89.333	Macaca_mulatta
ENSAMXG00000003657	tomm20a	86	67.952	ENSMNEG00000014840	ARID4B	72	89.333	Macaca_nemestrina
ENSAMXG00000003657	tomm20a	85	68.382	ENSMLEG00000033583	ARID4B	72	89.333	Mandrillus_leucophaeus
ENSAMXG00000003657	tomm20a	98	59.296	ENSMAMG00000017134	tomm20a	99	59.035	Mastacembelus_armatus
ENSAMXG00000003657	tomm20a	91	76.998	ENSMZEG00005009879	tomm20a	83	77.240	Maylandia_zebra
ENSAMXG00000003657	tomm20a	86	69.343	ENSMGAG00000011896	ARID4B	77	69.343	Meleagris_gallopavo
ENSAMXG00000003657	tomm20a	86	67.961	ENSMICG00000016358	ARID4B	74	83.146	Microcebus_murinus
ENSAMXG00000003657	tomm20a	85	79.798	ENSMMOG00000000561	tomm20a	77	79.545	Mola_mola
ENSAMXG00000003657	tomm20a	92	64.103	ENSMODG00000008417	ARID4B	72	89.333	Monodelphis_domestica
ENSAMXG00000003657	tomm20a	91	76.998	ENSMALG00000005205	tomm20a	95	61.236	Monopterus_albus
ENSAMXG00000003657	tomm20a	86	67.470	MGP_CAROLIEiJ_G0018236	Arid4b	72	88.000	Mus_caroli
ENSAMXG00000003657	tomm20a	86	67.229	ENSMUSG00000039219	Arid4b	72	88.000	Mus_musculus
ENSAMXG00000003657	tomm20a	86	67.470	MGP_PahariEiJ_G0019286	Arid4b	86	65.366	Mus_pahari
ENSAMXG00000003657	tomm20a	92	60.040	MGP_SPRETEiJ_G0019094	Arid4b	77	88.000	Mus_spretus
ENSAMXG00000003657	tomm20a	86	67.229	ENSMPUG00000002906	ARID4B	72	89.333	Mustela_putorius_furo
ENSAMXG00000003657	tomm20a	90	65.366	ENSMLUG00000016232	ARID4B	72	89.333	Myotis_lucifugus
ENSAMXG00000003657	tomm20a	86	66.747	ENSNGAG00000014629	Arid4b	72	89.333	Nannospalax_galili
ENSAMXG00000003657	tomm20a	92	74.447	ENSNBRG00000019684	tomm20a	95	73.427	Neolamprologus_brichardi
ENSAMXG00000003657	tomm20a	86	68.193	ENSNLEG00000002665	ARID4B	72	89.333	Nomascus_leucogenys
ENSAMXG00000003657	tomm20a	87	66.667	ENSODEG00000005373	ARID4B	72	89.333	Octodon_degus
ENSAMXG00000003657	tomm20a	86	68.204	ENSOCUG00000006605	ARID4B	72	89.333	Oryctolagus_cuniculus
ENSAMXG00000003657	tomm20a	90	73.529	ENSORLG00000012510	tomm20a	81	74.434	Oryzias_latipes
ENSAMXG00000003657	tomm20a	92	87.629	ENSORLG00020013988	tomm20a	90	87.629	Oryzias_latipes_hni
ENSAMXG00000003657	tomm20a	92	73.153	ENSORLG00015022835	tomm20a	94	74.384	Oryzias_latipes_hsok
ENSAMXG00000003657	tomm20a	88	75.545	ENSOMEG00000000521	tomm20a	95	58.767	Oryzias_melastigma
ENSAMXG00000003657	tomm20a	79	89.333	ENSOGAG00000012476	ARID4B	71	89.333	Otolemur_garnettii
ENSAMXG00000003657	tomm20a	90	65.937	ENSOARG00000003481	ARID4B	67	89.333	Ovis_aries
ENSAMXG00000003657	tomm20a	86	67.952	ENSPPAG00000031651	ARID4B	72	89.333	Pan_paniscus
ENSAMXG00000003657	tomm20a	86	67.229	ENSPPRG00000013739	ARID4B	72	89.333	Panthera_pardus
ENSAMXG00000003657	tomm20a	86	67.229	ENSPTIG00000012520	ARID4B	71	89.333	Panthera_tigris_altaica
ENSAMXG00000003657	tomm20a	86	67.952	ENSPTRG00000002129	ARID4B	72	89.333	Pan_troglodytes
ENSAMXG00000003657	tomm20a	65	69.231	ENSPTRG00000048786	-	75	75.000	Pan_troglodytes
ENSAMXG00000003657	tomm20a	86	67.233	ENSPANG00000013611	ARID4B	72	89.333	Papio_anubis
ENSAMXG00000003657	tomm20a	83	61.180	ENSPSIG00000011632	ARID4B	84	62.112	Pelodiscus_sinensis
ENSAMXG00000003657	tomm20a	52	66.667	ENSPMGG00000001596	tomm20a	74	84.615	Periophthalmus_magnuspinnatus
ENSAMXG00000003657	tomm20a	87	66.901	ENSPCIG00000029756	ARID4B	71	89.333	Phascolarctos_cinereus
ENSAMXG00000003657	tomm20a	90	76.998	ENSPFOG00000019430	tomm20a	82	90.256	Poecilia_formosa
ENSAMXG00000003657	tomm20a	90	76.755	ENSPLAG00000010554	tomm20a	82	77.724	Poecilia_latipinna
ENSAMXG00000003657	tomm20a	90	73.182	ENSPMEG00000003093	tomm20a	85	89.796	Poecilia_mexicana
ENSAMXG00000003657	tomm20a	90	76.755	ENSPREG00000007996	tomm20a	85	89.796	Poecilia_reticulata
ENSAMXG00000003657	tomm20a	86	67.952	ENSPPYG00000000098	ARID4B	72	89.333	Pongo_abelii
ENSAMXG00000003657	tomm20a	86	67.470	ENSPCOG00000024328	ARID4B	72	89.333	Propithecus_coquereli
ENSAMXG00000003657	tomm20a	79	67.229	ENSPVAG00000015159	ARID4B	72	88.000	Pteropus_vampyrus
ENSAMXG00000003657	tomm20a	96	64.482	ENSPNYG00000013988	tomm20a	95	59.983	Pundamilia_nyererei
ENSAMXG00000003657	tomm20a	99	82.530	ENSPNAG00000000523	tomm20a	88	81.124	Pygocentrus_nattereri
ENSAMXG00000003657	tomm20a	71	59.722	ENSRNOG00000016391	LOC100912163	66	89.333	Rattus_norvegicus
ENSAMXG00000003657	tomm20a	85	70.677	ENSRBIG00000042029	ARID4B	66	70.677	Rhinopithecus_bieti
ENSAMXG00000003657	tomm20a	86	70.720	ENSRROG00000045203	ARID4B	72	89.333	Rhinopithecus_roxellana
ENSAMXG00000003657	tomm20a	64	70.122	ENSSBOG00000020196	ARID4B	64	89.333	Saimiri_boliviensis_boliviensis
ENSAMXG00000003657	tomm20a	87	66.511	ENSSHAG00000015214	ARID4B	72	89.333	Sarcophilus_harrisii
ENSAMXG00000003657	tomm20a	60	85.859	ENSSFOG00015008923	tomm20a	78	85.859	Scleropages_formosus
ENSAMXG00000003657	tomm20a	99	54.610	ENSSFOG00015000132	arid4b	95	54.078	Scleropages_formosus
ENSAMXG00000003657	tomm20a	93	74.083	ENSSMAG00000010430	tomm20a	81	75.904	Scophthalmus_maximus
ENSAMXG00000003657	tomm20a	99	61.970	ENSSDUG00000003019	tomm20a	95	62.119	Seriola_dumerili
ENSAMXG00000003657	tomm20a	89	64.286	ENSSPUG00000015466	ARID4B	80	64.286	Sphenodon_punctatus
ENSAMXG00000003657	tomm20a	91	77.482	ENSSPAG00000007358	tomm20a	83	77.724	Stegastes_partitus
ENSAMXG00000003657	tomm20a	86	67.470	ENSSSCG00000010156	ARID4B	71	89.333	Sus_scrofa
ENSAMXG00000003657	tomm20a	86	67.312	ENSTGUG00000010246	ARID4B	77	68.281	Taeniopygia_guttata
ENSAMXG00000003657	tomm20a	61	54.646	ENSTRUG00000002893	tomm20a	65	83.178	Takifugu_rubripes
ENSAMXG00000003657	tomm20a	75	61.614	ENSTBEG00000003961	ARID4B	60	90.667	Tupaia_belangeri
ENSAMXG00000003657	tomm20a	90	64.303	ENSTTRG00000002228	ARID4B	71	89.333	Tursiops_truncatus
ENSAMXG00000003657	tomm20a	84	63.131	ENSUMAG00000006905	ARID4B	71	89.333	Ursus_maritimus
ENSAMXG00000003657	tomm20a	66	66.747	ENSVPAG00000006841	ARID4B	52	88.571	Vicugna_pacos
ENSAMXG00000003657	tomm20a	84	63.819	ENSVVUG00000008154	ARID4B	71	89.333	Vulpes_vulpes
ENSAMXG00000003657	tomm20a	84	87.654	ENSXETG00000024651	arid4b	73	87.838	Xenopus_tropicalis
ENSAMXG00000003657	tomm20a	90	76.998	ENSXMAG00000006538	tomm20a	87	89.796	Xiphophorus_maculatus