EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSAMXG00000003960 (Gene tree)
Gene ID
103038934
Gene Symbol
trnt1
Alias
zgc:86645
Full Name
tRNA nucleotidyl transferase 1
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Minus strand
Length
20387 bases
Position
chrAPWO02000137.1:535516-555902
Accession
103038934
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000049408PolyA_polPF01743.201.7e-3311
ENSAMXP00000004048PolyA_polPF01743.201.7e-3311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000004048-2179XM_022667720ENSAMXP00000004048435 (aa)XP_022523441W5K8Y7
ENSAMXT00000042641-2358XM_022667721ENSAMXP00000049408431 (aa)XP_022523442UPI000BBD611A
Gene Model
Click here to download ENSAMXG00000003960's gene model file
Pathways
Pathway IDPathway NameSource
amex03013RNA transportKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000003960's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000003960trnt19968.065ENSG00000072756TRNT19868.065Homo_sapiens
ENSAMXG00000003960trnt19973.193ENSAPOG00000013687trnt19973.193Acanthochromis_polyacanthus
ENSAMXG00000003960trnt19967.361ENSAMEG00000014520TRNT19967.361Ailuropoda_melanoleuca
ENSAMXG00000003960trnt19977.103ENSACIG00000021706trnt19977.103Amphilophus_citrinellus
ENSAMXG00000003960trnt19975.467ENSAOCG00000024612trnt19975.467Amphiprion_ocellaris
ENSAMXG00000003960trnt19967.681ENSAPEG00000022627trnt19967.681Amphiprion_percula
ENSAMXG00000003960trnt19380.597ENSATEG00000008928trnt19980.597Anabas_testudineus
ENSAMXG00000003960trnt19466.089ENSAPLG00000004258TRNT110066.089Anas_platyrhynchos
ENSAMXG00000003960trnt19964.802ENSACAG00000005657TRNT19864.802Anolis_carolinensis
ENSAMXG00000003960trnt19768.246ENSANAG00000024802TRNT19768.409Aotus_nancymaae
ENSAMXG00000003960trnt19976.168ENSACLG00000022227trnt19976.168Astatotilapia_calliptera
ENSAMXG00000003960trnt19967.209ENSBTAG00000019534TRNT19967.366Bos_taurus
ENSAMXG00000003960trnt19345.012WBGene00010089hpo-319345.012Caenorhabditis_elegans
ENSAMXG00000003960trnt19768.483ENSCJAG00000015466TRNT19768.646Callithrix_jacchus
ENSAMXG00000003960trnt19669.157ENSCAFG00000005985TRNT19569.157Canis_familiaris
ENSAMXG00000003960trnt19669.157ENSCAFG00020014746TRNT19569.157Canis_lupus_dingo
ENSAMXG00000003960trnt19967.907ENSCHIG00000007030TRNT19967.907Capra_hircus
ENSAMXG00000003960trnt19967.749ENSTSYG00000013390TRNT19967.907Carlito_syrichta
ENSAMXG00000003960trnt18756.117ENSCAPG00000006891TRNT19956.117Cavia_aperea
ENSAMXG00000003960trnt19766.746ENSCPOG00000007849TRNT19766.746Cavia_porcellus
ENSAMXG00000003960trnt19269.598ENSCCAG00000002919TRNT19770.284Cebus_capucinus
ENSAMXG00000003960trnt19769.596ENSCATG00000031985TRNT19669.596Cercocebus_atys
ENSAMXG00000003960trnt19966.359ENSCLAG00000005186TRNT19866.359Chinchilla_lanigera
ENSAMXG00000003960trnt19769.194ENSCSAG00000011052TRNT19769.359Chlorocebus_sabaeus
ENSAMXG00000003960trnt18174.737ENSCHOG00000005712TRNT18274.737Choloepus_hoffmanni
ENSAMXG00000003960trnt19568.215ENSCPBG00000017636TRNT19468.049Chrysemys_picta_bellii
ENSAMXG00000003960trnt19443.382ENSCING00000007069-10043.382Ciona_intestinalis
ENSAMXG00000003960trnt19441.872ENSCSAVG00000007494-9542.184Ciona_savignyi
ENSAMXG00000003960trnt19768.957ENSCANG00000039030TRNT19769.121Colobus_angolensis_palliatus
ENSAMXG00000003960trnt19767.773ENSCGRG00001009998Trnt19767.933Cricetulus_griseus_chok1gshd
ENSAMXG00000003960trnt19767.773ENSCGRG00000013410Trnt19372.727Cricetulus_griseus_crigri
ENSAMXG00000003960trnt19975.467ENSCSEG00000008157trnt19975.467Cynoglossus_semilaevis
ENSAMXG00000003960trnt19578.589ENSCVAG00000019770trnt19678.589Cyprinodon_variegatus
ENSAMXG00000003960trnt110083.295ENSDARG00000075297trnt110083.295Danio_rerio
ENSAMXG00000003960trnt19968.203ENSDNOG00000008837TRNT19868.203Dasypus_novemcinctus
ENSAMXG00000003960trnt19767.593ENSDORG00000014035Trnt19967.749Dipodomys_ordii
ENSAMXG00000003960trnt19347.901FBgn0037369CG21008447.901Drosophila_melanogaster
ENSAMXG00000003960trnt15873.387ENSETEG00000018177TRNT19973.387Echinops_telfairi
ENSAMXG00000003960trnt19462.963ENSEBUG00000012779-9562.963Eptatretus_burgeri
ENSAMXG00000003960trnt19967.898ENSEASG00005003577TRNT19968.056Equus_asinus_asinus
ENSAMXG00000003960trnt19968.129ENSECAG00000014420TRNT19968.287Equus_caballus
ENSAMXG00000003960trnt19569.586ENSEEUG00000009567TRNT19569.586Erinaceus_europaeus
ENSAMXG00000003960trnt110078.886ENSELUG00000003802trnt110078.886Esox_lucius
ENSAMXG00000003960trnt19968.140ENSFCAG00000026805TRNT19968.140Felis_catus
ENSAMXG00000003960trnt18969.271ENSFALG00000013539TRNT110069.091Ficedula_albicollis
ENSAMXG00000003960trnt19767.933ENSFDAG00000018412TRNT19767.933Fukomys_damarensis
ENSAMXG00000003960trnt19976.636ENSFHEG00000019294trnt19976.636Fundulus_heteroclitus
ENSAMXG00000003960trnt19975.000ENSGMOG00000007460trnt110075.000Gadus_morhua
ENSAMXG00000003960trnt19964.501ENSGALG00000017368TRNT110064.352Gallus_gallus
ENSAMXG00000003960trnt19977.336ENSGAFG00000008647trnt19977.336Gambusia_affinis
ENSAMXG00000003960trnt19976.869ENSGACG00000011903trnt19976.869Gasterosteus_aculeatus
ENSAMXG00000003960trnt19965.604ENSGAGG00000020942TRNT110065.455Gopherus_agassizii
ENSAMXG00000003960trnt19967.512ENSGGOG00000015286TRNT19867.512Gorilla_gorilla
ENSAMXG00000003960trnt19976.402ENSHBUG00000002797trnt19976.402Haplochromis_burtoni
ENSAMXG00000003960trnt19767.933ENSHGLG00000003649TRNT19767.933Heterocephalus_glaber_female
ENSAMXG00000003960trnt19663.962ENSHGLG00000000221-9763.962Heterocephalus_glaber_female
ENSAMXG00000003960trnt19766.746ENSHGLG00100016421TRNT19766.746Heterocephalus_glaber_male
ENSAMXG00000003960trnt19972.196ENSHCOG00000010618trnt19972.196Hippocampus_comes
ENSAMXG00000003960trnt110084.223ENSIPUG00000000971trnt110084.223Ictalurus_punctatus
ENSAMXG00000003960trnt19966.512ENSSTOG00000000150TRNT19672.362Ictidomys_tridecemlineatus
ENSAMXG00000003960trnt110067.749ENSJJAG00000018561Trnt19867.749Jaculus_jaculus
ENSAMXG00000003960trnt19975.467ENSKMAG00000011307trnt19975.467Kryptolebias_marmoratus
ENSAMXG00000003960trnt19969.789ENSLBEG00000019457trnt110069.789Labrus_bergylta
ENSAMXG00000003960trnt19870.309ENSLACG00000013227TRNT19770.309Latimeria_chalumnae
ENSAMXG00000003960trnt19973.086ENSLOCG00000011105trnt19973.086Lepisosteus_oculatus
ENSAMXG00000003960trnt19967.981ENSLAFG00000023191TRNT19968.140Loxodonta_africana
ENSAMXG00000003960trnt19769.596ENSMFAG00000045113TRNT19669.596Macaca_fascicularis
ENSAMXG00000003960trnt19769.596ENSMMUG00000017983TRNT19669.596Macaca_mulatta
ENSAMXG00000003960trnt19769.596ENSMNEG00000037805TRNT19669.596Macaca_nemestrina
ENSAMXG00000003960trnt18871.654ENSMLEG00000033671TRNT19971.654Mandrillus_leucophaeus
ENSAMXG00000003960trnt19976.168ENSMAMG00000023401trnt19976.168Mastacembelus_armatus
ENSAMXG00000003960trnt19976.168ENSMZEG00005009141trnt19976.168Maylandia_zebra
ENSAMXG00000003960trnt17465.312ENSMGAG00000009971TRNT110065.109Meleagris_gallopavo
ENSAMXG00000003960trnt19768.009ENSMAUG00000020707Trnt19768.171Mesocricetus_auratus
ENSAMXG00000003960trnt19668.810ENSMICG00000016615TRNT19768.974Microcebus_murinus
ENSAMXG00000003960trnt19768.483ENSMOCG00000004539Trnt19768.646Microtus_ochrogaster
ENSAMXG00000003960trnt19974.299ENSMMOG00000010742trnt19974.299Mola_mola
ENSAMXG00000003960trnt110065.596ENSMODG00000004368TRNT110065.596Monodelphis_domestica
ENSAMXG00000003960trnt19974.299ENSMALG00000008376trnt19974.299Monopterus_albus
ENSAMXG00000003960trnt19769.194MGP_CAROLIEiJ_G0028698Trnt19473.828Mus_caroli
ENSAMXG00000003960trnt19768.720ENSMUSG00000013736Trnt19768.884Mus_musculus
ENSAMXG00000003960trnt19969.142MGP_PahariEiJ_G0022449Trnt19975.500Mus_pahari
ENSAMXG00000003960trnt19768.957MGP_SPRETEiJ_G0029726Trnt19769.121Mus_spretus
ENSAMXG00000003960trnt19966.977ENSMPUG00000017017TRNT19966.977Mustela_putorius_furo
ENSAMXG00000003960trnt19070.725ENSMLUG00000011864TRNT110070.725Myotis_lucifugus
ENSAMXG00000003960trnt19767.299ENSNGAG00000000537Trnt19767.458Nannospalax_galili
ENSAMXG00000003960trnt18176.791ENSNBRG00000023606trnt19976.791Neolamprologus_brichardi
ENSAMXG00000003960trnt19968.203ENSNLEG00000003226TRNT19868.203Nomascus_leucogenys
ENSAMXG00000003960trnt110065.367ENSMEUG00000004684TRNT110065.367Notamacropus_eugenii
ENSAMXG00000003960trnt18967.708ENSOPRG00000015067TRNT19967.885Ochotona_princeps
ENSAMXG00000003960trnt19569.756ENSODEG00000007597TRNT19469.756Octodon_degus
ENSAMXG00000003960trnt19977.336ENSONIG00000020273trnt19877.336Oreochromis_niloticus
ENSAMXG00000003960trnt19466.173ENSOANG00000007514TRNT19466.173Ornithorhynchus_anatinus
ENSAMXG00000003960trnt19767.866ENSOCUG00000008580TRNT19768.029Oryctolagus_cuniculus
ENSAMXG00000003960trnt19972.664ENSORLG00000003165trnt19972.664Oryzias_latipes
ENSAMXG00000003960trnt19973.364ENSORLG00020022060trnt19973.364Oryzias_latipes_hni
ENSAMXG00000003960trnt19972.664ENSORLG00015018915trnt19972.664Oryzias_latipes_hsok
ENSAMXG00000003960trnt19970.561ENSOMEG00000003331trnt19970.561Oryzias_melastigma
ENSAMXG00000003960trnt19967.907ENSOARG00000008631TRNT19967.907Ovis_aries
ENSAMXG00000003960trnt19967.281ENSPPAG00000043566TRNT19867.281Pan_paniscus
ENSAMXG00000003960trnt19768.884ENSPPRG00000001327TRNT19768.884Panthera_pardus
ENSAMXG00000003960trnt19968.372ENSPTIG00000011448TRNT19968.372Panthera_tigris_altaica
ENSAMXG00000003960trnt19967.281ENSPTRG00000014564TRNT19867.281Pan_troglodytes
ENSAMXG00000003960trnt19769.596ENSPANG00000025944TRNT19669.596Papio_anubis
ENSAMXG00000003960trnt110077.262ENSPKIG00000020015trnt110077.262Paramormyrops_kingsleyae
ENSAMXG00000003960trnt19268.514ENSPSIG00000017356TRNT19969.832Pelodiscus_sinensis
ENSAMXG00000003960trnt19974.065ENSPMGG00000008888trnt19874.065Periophthalmus_magnuspinnatus
ENSAMXG00000003960trnt19768.720ENSPEMG00000019845Trnt19768.884Peromyscus_maniculatus_bairdii
ENSAMXG00000003960trnt110066.590ENSPCIG00000030436TRNT110066.590Phascolarctos_cinereus
ENSAMXG00000003960trnt19877.305ENSPFOG00000006194trnt19877.305Poecilia_formosa
ENSAMXG00000003960trnt19877.305ENSPLAG00000015623trnt19979.104Poecilia_latipinna
ENSAMXG00000003960trnt19976.869ENSPMEG00000012216trnt19978.856Poecilia_mexicana
ENSAMXG00000003960trnt19976.168ENSPREG00000021470trnt19976.168Poecilia_reticulata
ENSAMXG00000003960trnt19967.742ENSPPYG00000013702TRNT19867.742Pongo_abelii
ENSAMXG00000003960trnt18971.802ENSPCAG00000001951TRNT110071.802Procavia_capensis
ENSAMXG00000003960trnt19570.316ENSPCOG00000022228TRNT19570.316Propithecus_coquereli
ENSAMXG00000003960trnt18970.573ENSPVAG00000008784TRNT110070.573Pteropus_vampyrus
ENSAMXG00000003960trnt19976.168ENSPNYG00000003120trnt19976.168Pundamilia_nyererei
ENSAMXG00000003960trnt110087.703ENSPNAG00000000565trnt110087.703Pygocentrus_nattereri
ENSAMXG00000003960trnt19768.957ENSRNOG00000006432Trnt19769.121Rattus_norvegicus
ENSAMXG00000003960trnt19768.009ENSRBIG00000042632TRNT19768.171Rhinopithecus_bieti
ENSAMXG00000003960trnt19768.720ENSRROG00000036866TRNT19768.884Rhinopithecus_roxellana
ENSAMXG00000003960trnt19768.483ENSSBOG00000021208TRNT19768.646Saimiri_boliviensis_boliviensis
ENSAMXG00000003960trnt19767.143ENSSHAG00000018861TRNT19767.303Sarcophilus_harrisii
ENSAMXG00000003960trnt19976.852ENSSFOG00015020844trnt110076.852Scleropages_formosus
ENSAMXG00000003960trnt19977.103ENSSMAG00000015432trnt19777.103Scophthalmus_maximus
ENSAMXG00000003960trnt19977.570ENSSDUG00000012320trnt19977.570Seriola_dumerili
ENSAMXG00000003960trnt15674.274ENSSLDG00000016463-9174.477Seriola_lalandi_dorsalis
ENSAMXG00000003960trnt19977.103ENSSLDG00000009325trnt19977.103Seriola_lalandi_dorsalis
ENSAMXG00000003960trnt18970.757ENSSPUG00000014153TRNT110070.573Sphenodon_punctatus
ENSAMXG00000003960trnt19974.533ENSSPAG00000021005trnt19974.533Stegastes_partitus
ENSAMXG00000003960trnt19967.907ENSSSCG00000011529TRNT19968.065Sus_scrofa
ENSAMXG00000003960trnt19467.901ENSTGUG00000010192TRNT110067.980Taeniopygia_guttata
ENSAMXG00000003960trnt19975.234ENSTRUG00000001088trnt19975.234Takifugu_rubripes
ENSAMXG00000003960trnt19976.402ENSTNIG00000007363trnt19876.402Tetraodon_nigroviridis
ENSAMXG00000003960trnt16655.594ENSTBEG00000006367TRNT19255.594Tupaia_belangeri
ENSAMXG00000003960trnt19768.009ENSTTRG00000007803TRNT19768.171Tursiops_truncatus
ENSAMXG00000003960trnt19967.442ENSUAMG00000022574TRNT19967.442Ursus_americanus
ENSAMXG00000003960trnt19967.674ENSUMAG00000024092TRNT19967.674Ursus_maritimus
ENSAMXG00000003960trnt19669.157ENSVVUG00000012810TRNT19569.157Vulpes_vulpes
ENSAMXG00000003960trnt19762.648ENSXETG00000025091trnt19964.179Xenopus_tropicalis
ENSAMXG00000003960trnt19976.869ENSXCOG00000010150trnt19976.869Xiphophorus_couchianus
ENSAMXG00000003960trnt19977.103ENSXMAG00000002227trnt19977.103Xiphophorus_maculatus

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