EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000004252 (Gene tree)
Gene ID: 103039125
Gene Symbol: gatc
Alias: si:rp71-1c23.3
Full Name: glutamyl-tRNA amidotransferase subunit C
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 4167 bases
Position: chrAPWO02000062.1:1211713-1215879
Accession: 103039125
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000004351	Glu-tRNAGln	PF02686.15	3.3e-09	1	1
ENSAMXP00000036366	Glu-tRNAGln	PF02686.15	3.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000004351	-	1475	XM_007233481	ENSAMXP00000004351	228 (aa)	XP_007233543	W5K9U0
ENSAMXT00000057522	-	2353	-	ENSAMXP00000036366	217 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000004252's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex00970	Aminoacyl-tRNA biosynthesis	KEGG
amex01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000004252's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000004252	gatc	55	78.400	ENSAOCG00000014641	gatc	100	78.400	Amphiprion_ocellaris
ENSAMXG00000004252	gatc	60	76.471	ENSAPEG00000023411	gatc	68	77.273	Amphiprion_percula
ENSAMXG00000004252	gatc	74	63.584	ENSACLG00000026251	gatc	68	76.336	Astatotilapia_calliptera
ENSAMXG00000004252	gatc	51	38.462	WBGene00013433	Y66D12A.7	67	38.462	Caenorhabditis_elegans
ENSAMXG00000004252	gatc	60	51.880	ENSCPOG00000026436	-	61	66.292	Cavia_porcellus
ENSAMXG00000004252	gatc	55	63.492	ENSCPBG00000011342	-	67	63.492	Chrysemys_picta_bellii
ENSAMXG00000004252	gatc	72	52.727	ENSCSEG00000016618	-	65	69.369	Cynoglossus_semilaevis
ENSAMXG00000004252	gatc	71	66.061	ENSCSEG00000007798	gatc	82	66.061	Cynoglossus_semilaevis
ENSAMXG00000004252	gatc	64	74.675	ENSCVAG00000004364	gatc	70	81.818	Cyprinodon_variegatus
ENSAMXG00000004252	gatc	82	67.553	ENSDARG00000056855	gatc	99	67.021	Danio_rerio
ENSAMXG00000004252	gatc	66	51.370	ENSDNOG00000012593	-	62	60.345	Dasypus_novemcinctus
ENSAMXG00000004252	gatc	52	41.803	FBgn0064115	GatC	78	42.149	Drosophila_melanogaster
ENSAMXG00000004252	gatc	62	66.667	ENSELUG00000012608	gatc	75	81.553	Esox_lucius
ENSAMXG00000004252	gatc	59	57.037	ENSFALG00000007564	-	76	62.931	Ficedula_albicollis
ENSAMXG00000004252	gatc	73	68.072	ENSFHEG00000014992	GATC	99	63.441	Fundulus_heteroclitus
ENSAMXG00000004252	gatc	60	70.588	ENSGMOG00000008742	gatc	81	71.212	Gadus_morhua
ENSAMXG00000004252	gatc	54	80.342	ENSGAFG00000012801	gatc	72	81.416	Gambusia_affinis
ENSAMXG00000004252	gatc	60	75.000	ENSGACG00000008973	gatc	68	75.758	Gasterosteus_aculeatus
ENSAMXG00000004252	gatc	68	53.659	ENSGAGG00000016018	-	69	65.079	Gopherus_agassizii
ENSAMXG00000004252	gatc	74	64.162	ENSHBUG00000006827	gatc	68	77.099	Haplochromis_burtoni
ENSAMXG00000004252	gatc	56	78.125	ENSHCOG00000009209	gatc	100	78.125	Hippocampus_comes
ENSAMXG00000004252	gatc	81	72.432	ENSIPUG00000023072	gatc	84	72.432	Ictalurus_punctatus
ENSAMXG00000004252	gatc	57	72.868	ENSKMAG00000016476	gatc	99	72.868	Kryptolebias_marmoratus
ENSAMXG00000004252	gatc	65	67.114	ENSLBEG00000007603	gatc	73	73.485	Labrus_bergylta
ENSAMXG00000004252	gatc	66	60.000	ENSLACG00000018239	-	65	65.873	Latimeria_chalumnae
ENSAMXG00000004252	gatc	76	60.694	ENSLOCG00000004056	gatc	91	58.470	Lepisosteus_oculatus
ENSAMXG00000004252	gatc	60	79.412	ENSMAMG00000015851	gatc	73	80.303	Mastacembelus_armatus
ENSAMXG00000004252	gatc	74	63.584	ENSMZEG00005016072	gatc	68	76.336	Maylandia_zebra
ENSAMXG00000004252	gatc	60	51.429	ENSMAUG00000012756	Gatc	57	68.539	Mesocricetus_auratus
ENSAMXG00000004252	gatc	51	75.455	ENSMMOG00000017695	gatc	94	68.908	Mola_mola
ENSAMXG00000004252	gatc	58	52.518	MGP_CAROLIEiJ_G0027623	Gatc	61	68.421	Mus_caroli
ENSAMXG00000004252	gatc	58	53.237	ENSMUSG00000029536	Gatc	61	68.421	Mus_musculus
ENSAMXG00000004252	gatc	61	53.793	MGP_PahariEiJ_G0024203	Gatc	62	68.750	Mus_pahari
ENSAMXG00000004252	gatc	58	52.518	MGP_SPRETEiJ_G0028621	Gatc	61	67.368	Mus_spretus
ENSAMXG00000004252	gatc	74	64.162	ENSNBRG00000007810	gatc	68	77.099	Neolamprologus_brichardi
ENSAMXG00000004252	gatc	57	74.809	ENSONIG00000013444	gatc	90	74.809	Oreochromis_niloticus
ENSAMXG00000004252	gatc	53	74.380	ENSORLG00000007156	gatc	100	74.380	Oryzias_latipes
ENSAMXG00000004252	gatc	82	59.259	ENSORLG00020014991	gatc	98	59.259	Oryzias_latipes_hni
ENSAMXG00000004252	gatc	59	74.074	ENSORLG00015003450	gatc	70	74.242	Oryzias_latipes_hsok
ENSAMXG00000004252	gatc	59	74.074	ENSOMEG00000002280	gatc	70	74.809	Oryzias_melastigma
ENSAMXG00000004252	gatc	52	55.645	ENSOARG00000012338	-	96	55.645	Ovis_aries
ENSAMXG00000004252	gatc	82	59.067	ENSPKIG00000024856	gatc	99	59.067	Paramormyrops_kingsleyae
ENSAMXG00000004252	gatc	61	73.050	ENSPMGG00000018829	gatc	80	78.571	Periophthalmus_magnuspinnatus
ENSAMXG00000004252	gatc	64	74.172	ENSPFOG00000011603	gatc	71	79.545	Poecilia_formosa
ENSAMXG00000004252	gatc	64	73.510	ENSPLAG00000002471	gatc	71	78.788	Poecilia_latipinna
ENSAMXG00000004252	gatc	64	73.510	ENSPMEG00000020958	gatc	71	78.788	Poecilia_mexicana
ENSAMXG00000004252	gatc	50	58.772	ENSPCAG00000013864	-	84	58.772	Procavia_capensis
ENSAMXG00000004252	gatc	74	63.584	ENSPNYG00000016015	gatc	68	76.336	Pundamilia_nyererei
ENSAMXG00000004252	gatc	80	79.781	ENSPNAG00000001239	gatc	82	79.781	Pygocentrus_nattereri
ENSAMXG00000004252	gatc	61	55.714	ENSRNOG00000001161	Gatc	61	68.421	Rattus_norvegicus
ENSAMXG00000004252	gatc	62	54.074	ENSRNOG00000045621	Gatc	61	65.591	Rattus_norvegicus
ENSAMXG00000004252	gatc	63	70.073	ENSSFOG00015002508	gatc	71	80.357	Scleropages_formosus
ENSAMXG00000004252	gatc	73	68.862	ENSSMAG00000014280	gatc	73	80.303	Scophthalmus_maximus
ENSAMXG00000004252	gatc	70	67.284	ENSSDUG00000012206	gatc	68	76.515	Seriola_dumerili
ENSAMXG00000004252	gatc	69	67.500	ENSSLDG00000025159	gatc	67	76.515	Seriola_lalandi_dorsalis
ENSAMXG00000004252	gatc	57	56.489	ENSSPUG00000015693	-	73	63.366	Sphenodon_punctatus
ENSAMXG00000004252	gatc	64	73.973	ENSSPAG00000011860	gatc	69	78.788	Stegastes_partitus
ENSAMXG00000004252	gatc	60	75.735	ENSTRUG00000021596	gatc	83	66.061	Takifugu_rubripes
ENSAMXG00000004252	gatc	60	74.265	ENSTNIG00000015879	gatc	64	75.758	Tetraodon_nigroviridis
ENSAMXG00000004252	gatc	71	69.753	ENSXMAG00000018267	gatc	71	78.788	Xiphophorus_maculatus